seqinspector/subworkflows/local/prepare_genome/tests/main.nf.test.snap at aa10f6884b308903927b5a9e8bdd1a8c12434258 · beatrizsavinhas/seqinspector · GitHub

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{
    "Test without bwamem2 index file path, with run_picard_collecthsmetrics=true and without ref_dict": {
        "content": [
            [
                "",
                "bwamem2",
                "bwamem2/reference.fasta.0123",
                "bwamem2/reference.fasta.amb",
                "bwamem2/reference.fasta.ann",
                "bwamem2/reference.fasta.bwt.2bit.64",
                "bwamem2/reference.fasta.pac"
            ],
            [
                "",
                "reference.fasta.fai",
                "reference.fasta.sizes"
            ],
            [
                "",
                "genome.dict"
            ]
        ],
        "meta": {
            "nf-test": "0.9.3",
            "nextflow": "25.10.2"
        },
        "timestamp": "2025-12-02T11:58:24.141721"
    },
    "Test without bwamem2 index file path, with run_picard_collecthsmetrics=true and with ref_dict": {
        "content": [
            [
                "",
                "bwamem2",
                "bwamem2/reference.fasta.0123",
                "bwamem2/reference.fasta.amb",
                "bwamem2/reference.fasta.ann",
                "bwamem2/reference.fasta.bwt.2bit.64",
                "bwamem2/reference.fasta.pac"
            ],
            [
                "",
                "reference.fasta.fai",
                "reference.fasta.sizes"
            ]
        ],
        "meta": {
            "nf-test": "0.9.3",
            "nextflow": "25.10.2"
        },
        "timestamp": "2025-12-02T11:57:18.592897"
    },
    "Test without bwamem2 index file path and with run_picard_collecthsmetrics=false": {
        "content": [
            [
                "",
                "bwamem2",
                "bwamem2/reference.fasta.0123",
                "bwamem2/reference.fasta.amb",
                "bwamem2/reference.fasta.ann",
                "bwamem2/reference.fasta.bwt.2bit.64",
                "bwamem2/reference.fasta.pac"
            ],
            [
                "",
                "reference.fasta.fai",
                "reference.fasta.sizes"
            ]
        ],
        "meta": {
            "nf-test": "0.9.3",
            "nextflow": "25.10.2"
        },
        "timestamp": "2025-12-02T11:56:19.206085"
    }
}