diff --git a/README.md b/README.md index ee8cd54..968db42 100644 --- a/README.md +++ b/README.md @@ -46,14 +46,14 @@ Based on : ![estimateT1](https://github.com/benoitberanger/mp2rage/blob/master/example/estimateT1.png) #### Comments on the parameters -| Parameter name | Description | dcm2niix json sidecar field | on Siemens scanners | -|--------------------------------|---------------------------------------|-------------------------------|----------------------------------------------------| -| UNI image | input T1 weighted | x | this image has the suffix `\_UNI_image` | -| Magnetic field strength B0 (T) | in Tesla (T) | MagneticFieldStrength | x | -| MR2RAGE TR (s) | Repetition time (TR) of the MP2RAGE | RepetitionTime | TR | -| EchoSpacing (s) | in seconds (s), TR of the GRE readout | **does not exist** | tab Sequence > Part 1 > Echos pacing | -| Inversin Times (s) | in seconds (s), such as `[TI1 TI2]` | InversionTime | TI | -| Flip Angles (°) | in degree (°), such as `[FA1 FA2]` | FlipAngle | Flip angle | -| Number of slices per slab | Number of slices per slab | **does not exist** | Slices per slab | -| PartialFourierInSlice | The value range is 0 to 1 | PartialFourier | **SlicePartialFourier**, not PhasePartialFourier
expressed as a fraction such as 8/8, 7/8, ... | -| Fat saturation pulse | x | **does not exist** | tab Contrast > Fat Sat
the option can be "nonce, "water excitation normal", "water excitation fast" | +| Parameter name | Description | dcm2niix json sidecar field | on Siemens scanners | BIDS dataset filename and sidecar metadata | +| ------------------------------ | ------------------------------------- | --------------------------- | -------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------------------------------------- | +| UNI image | input T1 weighted | x | this image has the suffix `\_UNI_image` | `anat/sub-subjectLabel*_UNIT1.nii(.gz)` | +| Magnetic field strength B0 (T) | in Tesla (T) | MagneticFieldStrength | x | `MagneticFieldStrength` | +| MR2RAGE TR (s) | Repetition time (TR) of the MP2RAGE | RepetitionTime | TR | `RepetitionTimePreparation` | +| EchoSpacing (s) | in seconds (s), TR of the GRE readout | **does not exist** | tab Sequence > Part 1 > Echos pacing | **does not exist** | +| Inversin Times (s) | in seconds (s), such as `[TI1 TI2]` | InversionTime | TI | `InversionTime` for images `anat/sub-subjectLabel*_inv-1*_MP2RAGE.nii(.gz)` and `anat/sub-subjectLabel*_inv-2*_MP2RAGE.nii(.gz)` | +| Flip Angles (°) | in degree (°), such as `[FA1 FA2]` | FlipAngle | Flip angle | `FlipAngle` for images `anat/sub-subjectLabel*_inv-1*_MP2RAGE.nii(.gz)` and `anat/sub-subjectLabel*_inv-2*_MP2RAGE.nii(.gz)` | +| Number of slices per slab | Number of slices per slab | **does not exist** | Slices per slab | **does not exist** | +| PartialFourierInSlice | The value range is 0 to 1 | PartialFourier | **SlicePartialFourier**, not PhasePartialFourier
expressed as a fraction such as 8/8, 7/8, ... | **does not exist** | +| Fat saturation pulse | x | **does not exist** | tab Contrast > Fat Sat
the option can be "nonce, "water excitation normal", "water excitation fast" | **does not exist** |