chore(deps): bump github/codeql-action/init from 4.36.2 to 4.36.3 #497
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| name: Python Code Quality | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| jobs: | |
| quality-checks: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0 | |
| with: | |
| persist-credentials: false | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install uv | |
| run: | | |
| curl -LsSf https://astral.sh/uv/install.sh | sh | |
| echo "$HOME/.local/bin" >> "$GITHUB_PATH" | |
| - name: Install dependencies | |
| run: | | |
| uv sync --all-extras | |
| - name: Run ruff linter | |
| run: | | |
| uv run ruff check . --output-format=github | |
| - name: Run ruff formatter check | |
| run: | | |
| uv run ruff format --check . | |
| - name: Run mypy type checker | |
| run: | | |
| uv run mypy metpo/ --ignore-missing-imports --no-strict-optional | |
| continue-on-error: true # Don't fail build on type errors initially | |
| - name: Check imports with ruff | |
| run: | | |
| uv run ruff check . --select I --diff | |
| - name: Run pytest | |
| run: | | |
| uv run pytest tests/ -v | |
| cli-smoke-tests: | |
| runs-on: ubuntu-latest | |
| needs: quality-checks | |
| steps: | |
| - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0 | |
| with: | |
| persist-credentials: false | |
| - name: Set up Python | |
| uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0 | |
| with: | |
| python-version: "3.11" | |
| - name: Install uv | |
| run: | | |
| curl -LsSf https://astral.sh/uv/install.sh | sh | |
| echo "$HOME/.local/bin" >> "$GITHUB_PATH" | |
| - name: Install dependencies | |
| run: | | |
| uv sync | |
| - name: Test CLI tools are importable | |
| run: | | |
| # Test that all CLI commands can be imported | |
| uv run extract-rank-triples --help | |
| uv run convert-chem-props --help | |
| uv run reconcile-bactotraits-coverage --help | |
| uv run reconcile-madin-coverage --help | |
| uv run categorize-ontologies --help | |
| uv run diff-templates --help |