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Fix ontology metadata: real creators/contributors, honest description, DC cleanup
Credit (verified ORCIDs/emails, roles per maintainer decision): - creator/lead: Mark Andrew Miller (0000-0001-9076-6066) - contributors: Marcin P. Joachimiak (0000-0001-8175-045X), Christopher J. Mungall (0000-0002-6601-2165) Applied per field, each datum only where the field expects it: - metpo-edit.owl header: dcterms:creator/contributor now carry ORCID IRIs (replacing the placeholder string "METPO Development Team"); names are not crammed in here. - metpo-odk.yaml: creators/contributors hold names only; contact holds email. - pyproject.toml: authors + maintainers (name + email keys). - CITATION.cff (new): given/family names, ORCID, email, affiliation each in their own field. Honest description (all three places): drops the unsupported "follows OBO Foundry conventions" and "reuses terms from ... CHEBI, NCBITaxon" claims (CHEBI=1 ref, NCBITaxon=0 in the actual content). States what METPO actually does: harmonizes trait-database terminology, uses OBO-style annotation patterns, and cites OMP/MicrO/GO/ECOCORE/PATO as definition sources (the ontologies actually referenced). DC namespace cleanup: - Drop the declared-but-unused dce: prefix (deprecated DC Elements 1.1 namespace; the repo's dc-properties-violation QC check already bans its use). All DC properties remain correctly bound to dcterms: (http://purl.org/dc/terms/). - Drop dcterms:modified (hand-maintained, contradicted the automated versionIRI/versionInfo). dcterms:issued retained as first-release date. Artifacts rebuilt. make test passes: 0 ROBOT errors, 5/5 SPARQL, OWL 2 DL valid. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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‎CITATION.cff‎

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cff-version: 1.2.0
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message: "If you use METPO, please cite it using these metadata."
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title: "METPO: Microbial Ecophysiological Trait and Phenotype Ontology"
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abstract: >-
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METPO provides terms for microbial ecophysiological traits and phenotypes:
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growth preferences (temperature, pH, salinity, oxygen), metabolism, and cell
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morphology of bacteria and archaea. Its primary purpose is to harmonize
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terminology across major microbial trait databases (BacDive, BactoTraits,
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Madin bacteria_archaea_traits, MetaTraits) for use in NMDC and KG-Microbe.
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type: dataset
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authors:
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- given-names: "Mark Andrew"
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family-names: "Miller"
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orcid: "https://orcid.org/0000-0001-9076-6066"
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email: "MAM@lbl.gov"
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affiliation: "Lawrence Berkeley National Laboratory"
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- given-names: "Marcin P."
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family-names: "Joachimiak"
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orcid: "https://orcid.org/0000-0001-8175-045X"
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email: "mjoachimiak@lbl.gov"
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affiliation: "Lawrence Berkeley National Laboratory"
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- given-names: "Christopher J."
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family-names: "Mungall"
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orcid: "https://orcid.org/0000-0002-6601-2165"
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email: "cjmungall@lbl.gov"
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affiliation: "Lawrence Berkeley National Laboratory"
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license: "CC-BY-4.0"
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repository-code: "https://github.com/berkeleybop/metpo"
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url: "https://w3id.org/metpo"

‎metpo-base.json‎

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"val" : "http://purl.obolibrary.org/obo/IAO_8000001"
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}, {
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"pred" : "http://purl.org/dc/terms/contributor",
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"val" : "https://orcid.org/0000-0001-9076-6066"
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"val" : "https://orcid.org/0000-0001-8175-045X"
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}, {
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"pred" : "http://purl.org/dc/terms/contributor",
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"val" : "https://orcid.org/0000-0002-6601-2165"
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}, {
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"pred" : "http://purl.org/dc/terms/creator",
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"val" : "METPO Development Team"
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"val" : "https://orcid.org/0000-0001-9076-6066"
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}, {
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"pred" : "http://purl.org/dc/terms/description",
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"val" : "METPO provides standardized terms for the phenotypic traits, growth conditions, metabolic capabilities, and morphology of bacteria and archaea. It integrates heterogeneous microbial trait resources (BactoTraits, BacDive, Madin et al.) and supports knowledge-graph and literature-mining workflows in projects such as KG-Microbe. METPO follows OBO Foundry conventions and reuses terms from PATO, GO, CHEBI, NCBITaxon, and related ontologies where possible."
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"val" : "METPO provides terms for microbial ecophysiological traits and phenotypes: growth preferences (temperature, pH, salinity, oxygen), metabolism, and cell morphology of bacteria and archaea. Its primary purpose is to harmonize terminology across major microbial trait databases (BacDive, BactoTraits, Madin bacteria_archaea_traits, MetaTraits) for use in NMDC and KG-Microbe. METPO uses OBO-style annotation patterns (IAO textual definitions, oboInOwl synonyms) and cites terms from OMP, MicrO, GO, ECOCORE, and PATO as definition sources."
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}, {
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"pred" : "http://purl.org/dc/terms/issued",
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"val" : "2024-01-01"
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}, {
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"pred" : "http://purl.org/dc/terms/license",
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"val" : "https://creativecommons.org/licenses/by/4.0/"
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}, {
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"pred" : "http://purl.org/dc/terms/modified",
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"val" : "2026-05-18"
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}, {
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"pred" : "http://purl.org/dc/terms/title",
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"val" : "METPO: Microbial Ecophysiological Trait and Phenotype Ontology"
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"val" : "https://github.com/berkeleybop/metpo"
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}, {
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"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
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"val" : "2026-06-04"
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"val" : "2026-06-05"
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} ],
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"version" : "https://w3id.org/metpo/releases/2026-06-04/metpo-base.json"
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"version" : "https://w3id.org/metpo/releases/2026-06-05/metpo-base.json"
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},
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"nodes" : [ {
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"id" : "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass",
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"id" : "http://purl.org/dc/terms/license",
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"type" : "PROPERTY",
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"propertyType" : "ANNOTATION"
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}, {
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"id" : "http://purl.org/dc/terms/modified",
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"type" : "PROPERTY",
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"propertyType" : "ANNOTATION"
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}, {
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"id" : "http://purl.org/dc/terms/title",
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"type" : "PROPERTY",

‎metpo-base.obo‎

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format-version: 1.2
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data-version: https://w3id.org/metpo/releases/2026-06-04/metpo-base.owl
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idspace: dce http://purl.org/dc/elements/1.1/
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data-version: https://w3id.org/metpo/releases/2026-06-05/metpo-base.owl
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idspace: dc http://purl.org/dc/elements/1.1/
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idspace: dcterms http://purl.org/dc/terms/
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idspace: metpo https://w3id.org/metpo/
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idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl#
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idspace: qudt http://qudt.org/schema/qudt/
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idspace: skos http://www.w3.org/2004/02/skos/core#
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ontology: https://w3id.org/metpo/metpo-base.owl
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property_value: dce:type IAO:8000001
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property_value: dcterms:contributor https://orcid.org/0000-0001-9076-6066
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property_value: dcterms:creator "METPO Development Team" xsd:string
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property_value: dcterms:description "METPO provides standardized terms for the phenotypic traits, growth conditions, metabolic capabilities, and morphology of bacteria and archaea. It integrates heterogeneous microbial trait resources (BactoTraits, BacDive, Madin et al.) and supports knowledge-graph and literature-mining workflows in projects such as KG-Microbe. METPO follows OBO Foundry conventions and reuses terms from PATO, GO, CHEBI, NCBITaxon, and related ontologies where possible." xsd:string
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property_value: dc:type IAO:8000001
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property_value: dcterms:contributor https://orcid.org/0000-0001-8175-045X
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property_value: dcterms:contributor https://orcid.org/0000-0002-6601-2165
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property_value: dcterms:creator https://orcid.org/0000-0001-9076-6066
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property_value: dcterms:description "METPO provides terms for microbial ecophysiological traits and phenotypes: growth preferences (temperature, pH, salinity, oxygen), metabolism, and cell morphology of bacteria and archaea. Its primary purpose is to harmonize terminology across major microbial trait databases (BacDive, BactoTraits, Madin bacteria_archaea_traits, MetaTraits) for use in NMDC and KG-Microbe. METPO uses OBO-style annotation patterns (IAO textual definitions, oboInOwl synonyms) and cites terms from OMP, MicrO, GO, ECOCORE, and PATO as definition sources." xsd:string
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property_value: dcterms:issued "2024-01-01" xsd:string
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property_value: dcterms:license https://creativecommons.org/licenses/by/4.0/
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property_value: dcterms:modified "2026-05-18" xsd:string
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property_value: dcterms:title "METPO: Microbial Ecophysiological Trait and Phenotype Ontology" xsd:string
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property_value: owl:versionInfo "2026-06-04" xsd:string
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property_value: owl:versionInfo "2026-06-05" xsd:string
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property_value: seeAlso https://bioportal.bioontology.org/ontologies/METPO
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property_value: seeAlso https://bioregistry.io/registry/metpo
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property_value: seeAlso https://github.com/berkeleybop/metpo

‎metpo-base.owl‎

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<?xml version="1.0"?>
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<rdf:RDF xmlns="https://w3id.org/metpo/metpo-base.owl#"
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xml:base="https://w3id.org/metpo/metpo-base.owl"
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xmlns:dc="http://purl.org/dc/elements/1.1/"
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xmlns:IAO="http://purl.obolibrary.org/obo/IAO_"
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xmlns:dce="http://purl.org/dc/elements/1.1/"
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xmlns:obo="http://purl.obolibrary.org/obo/"
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xmlns:owl="http://www.w3.org/2002/07/owl#"
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xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
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xmlns:dcterms="http://purl.org/dc/terms/"
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xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
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<owl:Ontology rdf:about="https://w3id.org/metpo/metpo-base.owl">
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<owl:versionIRI rdf:resource="https://w3id.org/metpo/releases/2026-06-04/metpo-base.owl"/>
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<dce:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
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<dcterms:contributor rdf:resource="https://orcid.org/0000-0001-9076-6066"/>
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<dcterms:creator>METPO Development Team</dcterms:creator>
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<dcterms:description>METPO provides standardized terms for the phenotypic traits, growth conditions, metabolic capabilities, and morphology of bacteria and archaea. It integrates heterogeneous microbial trait resources (BactoTraits, BacDive, Madin et al.) and supports knowledge-graph and literature-mining workflows in projects such as KG-Microbe. METPO follows OBO Foundry conventions and reuses terms from PATO, GO, CHEBI, NCBITaxon, and related ontologies where possible.</dcterms:description>
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<owl:versionIRI rdf:resource="https://w3id.org/metpo/releases/2026-06-05/metpo-base.owl"/>
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<dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
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<dcterms:contributor rdf:resource="https://orcid.org/0000-0001-8175-045X"/>
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<dcterms:contributor rdf:resource="https://orcid.org/0000-0002-6601-2165"/>
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<dcterms:creator rdf:resource="https://orcid.org/0000-0001-9076-6066"/>
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<dcterms:description>METPO provides terms for microbial ecophysiological traits and phenotypes: growth preferences (temperature, pH, salinity, oxygen), metabolism, and cell morphology of bacteria and archaea. Its primary purpose is to harmonize terminology across major microbial trait databases (BacDive, BactoTraits, Madin bacteria_archaea_traits, MetaTraits) for use in NMDC and KG-Microbe. METPO uses OBO-style annotation patterns (IAO textual definitions, oboInOwl synonyms) and cites terms from OMP, MicrO, GO, ECOCORE, and PATO as definition sources.</dcterms:description>
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<dcterms:license rdf:resource="https://creativecommons.org/licenses/by/4.0/"/>
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<dcterms:title>METPO: Microbial Ecophysiological Trait and Phenotype Ontology</dcterms:title>
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<rdfs:seeAlso rdf:resource="https://bioportal.bioontology.org/ontologies/METPO"/>
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<rdfs:seeAlso rdf:resource="https://bioregistry.io/registry/metpo"/>
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<rdfs:seeAlso rdf:resource="https://github.com/berkeleybop/metpo"/>
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<owl:versionInfo>2026-06-05</owl:versionInfo>
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‎metpo-full.json‎

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"meta" : {
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"basicPropertyValues" : [ {
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"val" : "https://orcid.org/0000-0001-8175-045X"
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}, {
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"pred" : "http://purl.org/dc/terms/contributor",
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"val" : "METPO provides standardized terms for the phenotypic traits, growth conditions, metabolic capabilities, and morphology of bacteria and archaea. It integrates heterogeneous microbial trait resources (BactoTraits, BacDive, Madin et al.) and supports knowledge-graph and literature-mining workflows in projects such as KG-Microbe. METPO follows OBO Foundry conventions and reuses terms from PATO, GO, CHEBI, NCBITaxon, and related ontologies where possible."
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"val" : "METPO provides terms for microbial ecophysiological traits and phenotypes: growth preferences (temperature, pH, salinity, oxygen), metabolism, and cell morphology of bacteria and archaea. Its primary purpose is to harmonize terminology across major microbial trait databases (BacDive, BactoTraits, Madin bacteria_archaea_traits, MetaTraits) for use in NMDC and KG-Microbe. METPO uses OBO-style annotation patterns (IAO textual definitions, oboInOwl synonyms) and cites terms from OMP, MicrO, GO, ECOCORE, and PATO as definition sources."
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"propertyType" : "ANNOTATION"
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‎metpo-full.obo‎

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data-version: https://w3id.org/metpo/releases/2026-06-04/metpo-full.owl
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idspace: dce http://purl.org/dc/elements/1.1/
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data-version: https://w3id.org/metpo/releases/2026-06-05/metpo-full.owl
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idspace: dcterms http://purl.org/dc/terms/
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idspace: metpo https://w3id.org/metpo/
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idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl#
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idspace: qudt http://qudt.org/schema/qudt/
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ontology: https://w3id.org/metpo/metpo-full.owl
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property_value: dcterms:contributor https://orcid.org/0000-0001-9076-6066
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property_value: dcterms:creator "METPO Development Team" xsd:string
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property_value: dcterms:description "METPO provides standardized terms for the phenotypic traits, growth conditions, metabolic capabilities, and morphology of bacteria and archaea. It integrates heterogeneous microbial trait resources (BactoTraits, BacDive, Madin et al.) and supports knowledge-graph and literature-mining workflows in projects such as KG-Microbe. METPO follows OBO Foundry conventions and reuses terms from PATO, GO, CHEBI, NCBITaxon, and related ontologies where possible." xsd:string
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property_value: dcterms:contributor https://orcid.org/0000-0001-8175-045X
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property_value: dcterms:contributor https://orcid.org/0000-0002-6601-2165
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property_value: dcterms:creator https://orcid.org/0000-0001-9076-6066
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property_value: dcterms:description "METPO provides terms for microbial ecophysiological traits and phenotypes: growth preferences (temperature, pH, salinity, oxygen), metabolism, and cell morphology of bacteria and archaea. Its primary purpose is to harmonize terminology across major microbial trait databases (BacDive, BactoTraits, Madin bacteria_archaea_traits, MetaTraits) for use in NMDC and KG-Microbe. METPO uses OBO-style annotation patterns (IAO textual definitions, oboInOwl synonyms) and cites terms from OMP, MicrO, GO, ECOCORE, and PATO as definition sources." xsd:string
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‎metpo-full.owl‎

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<dcterms:description>METPO provides standardized terms for the phenotypic traits, growth conditions, metabolic capabilities, and morphology of bacteria and archaea. It integrates heterogeneous microbial trait resources (BactoTraits, BacDive, Madin et al.) and supports knowledge-graph and literature-mining workflows in projects such as KG-Microbe. METPO follows OBO Foundry conventions and reuses terms from PATO, GO, CHEBI, NCBITaxon, and related ontologies where possible.</dcterms:description>
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<owl:versionIRI rdf:resource="https://w3id.org/metpo/releases/2026-06-05/metpo-full.owl"/>
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<dcterms:contributor rdf:resource="https://orcid.org/0000-0002-6601-2165"/>
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<dcterms:creator rdf:resource="https://orcid.org/0000-0001-9076-6066"/>
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<dcterms:description>METPO provides terms for microbial ecophysiological traits and phenotypes: growth preferences (temperature, pH, salinity, oxygen), metabolism, and cell morphology of bacteria and archaea. Its primary purpose is to harmonize terminology across major microbial trait databases (BacDive, BactoTraits, Madin bacteria_archaea_traits, MetaTraits) for use in NMDC and KG-Microbe. METPO uses OBO-style annotation patterns (IAO textual definitions, oboInOwl synonyms) and cites terms from OMP, MicrO, GO, ECOCORE, and PATO as definition sources.</dcterms:description>
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<rdfs:seeAlso rdf:resource="https://bioregistry.io/registry/metpo"/>
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<rdfs:seeAlso rdf:resource="https://github.com/berkeleybop/metpo"/>
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<owl:versionInfo>2026-06-04</owl:versionInfo>
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<owl:versionInfo>2026-06-05</owl:versionInfo>
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</owl:Ontology>
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<!-- http://purl.org/dc/terms/modified -->
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<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/modified"/>
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<!-- http://purl.org/dc/terms/title -->
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<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/title">

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