chore(deps): bump the python-deps group with 3 updates (#565)

Bumps the python-deps group with 3 updates: [click](https://github.com/pallets/click), [openai](https://github.com/openai/openai-python) and [ruff](https://github.com/astral-sh/ruff).


Updates `click` from 8.4.1 to 8.4.2
- [Release notes](https://github.com/pallets/click/releases)
- [Changelog](https://github.com/pallets/click/blob/main/CHANGES.md)
- [Commits](pallets/click@8.4.1...8.4.2)

Updates `openai` from 2.43.0 to 2.44.0
- [Release notes](https://github.com/openai/openai-python/releases)
- [Changelog](https://github.com/openai/openai-python/blob/main/CHANGELOG.md)
- [Commits](openai/openai-python@v2.43.0...v2.44.0)

Updates `ruff` from 0.15.18 to 0.15.20
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.15.18...0.15.20)

---
updated-dependencies:
- dependency-name: click
  dependency-version: 8.4.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-deps
- dependency-name: openai
  dependency-version: 2.44.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-deps
- dependency-name: ruff
  dependency-version: 0.15.20
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-deps
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Mark Andrew Miller <MAM@lbl.gov>

Author: dependabot[bot]

pyproject.toml

@@ -24,7 +24,7 @@ classifiers = [
 ]
 
 dependencies = [
-    "click>=8.4.1",
+    "click>=8.4.2",
     "kgx>=2.1.0",
     "pandas>=3.0.3",
     "pymongo>=4.17.0",
@@ -53,12 +53,12 @@ dev = [
     "rdflib>=7.1.4",
     "semsql>=0.4.0",
     "tqdm>=4.68.3",
-    "openai>=2.43.0",
+    "openai>=2.44.0",
     # Testing
     "pytest>=9.1.1",
     # Code quality tools
     "black>=26.5.1",
-    "ruff>=0.15.18",
+    "ruff>=0.15.20",
     "mypy>=2.1.0",
     "pre-commit>=4.6.0",
     "types-PyYAML>=6.0.12",
@@ -69,7 +69,7 @@ literature = [
     "linkml>=1.11.1",
     "oaklib>=0.6.23",
     "pandas>=3.0.3",
-    "openai>=2.43.0",
+    "openai>=2.44.0",
     "semsql>=0.4.0",
 ]
 databases = [