Skip to content

Commit e817d25

Browse files
turbomamclaude
turbomam
and
claude
committed
build: rebuild release from current Sheet (captures #356/#357/#432 + #377 def fixes)
Re-downloaded both Sheet tabs and rebuilt all release artifacts so they reflect the source-of-truth fixes made since the last build: the GC-bin synonym un-swap (#356/#432), the NaCl-delta-high formula direction (#357), and the 128 non-Aristotelian definition corrections from the first #377 cleanup pass. Regenerates src/templates/metpo_sheet.tsv, components/metpo_sheet.owl, and the metpo / metpo-base / metpo-full .owl/.obo/.json artifacts on the w3id IRI scheme. Also merges main (CODEOWNERS #457, content-lint guardrail #460). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
1 parent 4c52f44 commit e817d25

11 files changed

Lines changed: 284 additions & 284 deletions

File tree

‎metpo-base.json‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -37,9 +37,9 @@
3737
"val" : "https://github.com/berkeleybop/metpo"
3838
}, {
3939
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
40-
"val" : "2026-06-01"
40+
"val" : "2026-06-02"
4141
} ],
42-
"version" : "https://w3id.org/metpo/metpo/releases/2026-06-01/metpo-base.json"
42+
"version" : "https://w3id.org/metpo/metpo/releases/2026-06-02/metpo-base.json"
4343
},
4444
"nodes" : [ {
4545
"id" : "http://purl.org/dc/elements/1.1/type",

‎metpo-base.obo‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
format-version: 1.2
2-
data-version: https://w3id.org/metpo/metpo/releases/2026-06-01/metpo-base.owl
2+
data-version: https://w3id.org/metpo/metpo/releases/2026-06-02/metpo-base.owl
33
idspace: dce http://purl.org/dc/elements/1.1/
44
idspace: dcterms http://purl.org/dc/terms/
55
ontology: https://w3id.org/metpo/metpo/metpo-base.owl
@@ -11,7 +11,7 @@ property_value: dcterms:issued "2024-01-01" xsd:string
1111
property_value: dcterms:license https://creativecommons.org/licenses/by/4.0/
1212
property_value: dcterms:modified "2026-05-18" xsd:string
1313
property_value: dcterms:title "METPO: Microbial Ecophysiological Trait and Phenotype Ontology" xsd:string
14-
property_value: owl:versionInfo "2026-06-01" xsd:string
14+
property_value: owl:versionInfo "2026-06-02" xsd:string
1515
property_value: seeAlso https://bioportal.bioontology.org/ontologies/METPO
1616
property_value: seeAlso https://bioregistry.io/registry/metpo
1717
property_value: seeAlso https://github.com/berkeleybop/metpo

‎metpo-base.owl‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -10,7 +10,7 @@
1010
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
1111
xmlns:dcterms="http://purl.org/dc/terms/">
1212
<owl:Ontology rdf:about="https://w3id.org/metpo/metpo/metpo-base.owl">
13-
<owl:versionIRI rdf:resource="https://w3id.org/metpo/metpo/releases/2026-06-01/metpo-base.owl"/>
13+
<owl:versionIRI rdf:resource="https://w3id.org/metpo/metpo/releases/2026-06-02/metpo-base.owl"/>
1414
<dce:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
1515
<dcterms:contributor rdf:resource="https://orcid.org/0000-0001-9076-6066"/>
1616
<dcterms:creator>METPO Development Team</dcterms:creator>
@@ -22,7 +22,7 @@
2222
<rdfs:seeAlso rdf:resource="https://bioportal.bioontology.org/ontologies/METPO"/>
2323
<rdfs:seeAlso rdf:resource="https://bioregistry.io/registry/metpo"/>
2424
<rdfs:seeAlso rdf:resource="https://github.com/berkeleybop/metpo"/>
25-
<owl:versionInfo>2026-06-01</owl:versionInfo>
25+
<owl:versionInfo>2026-06-02</owl:versionInfo>
2626
</owl:Ontology>
2727

2828

‎metpo-full.json‎

Lines changed: 28 additions & 28 deletions
Original file line numberDiff line numberDiff line change
@@ -34,9 +34,9 @@
3434
"val" : "https://github.com/berkeleybop/metpo"
3535
}, {
3636
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
37-
"val" : "2026-06-01"
37+
"val" : "2026-06-02"
3838
} ],
39-
"version" : "https://w3id.org/metpo/metpo/releases/2026-06-01/metpo-full.json"
39+
"version" : "https://w3id.org/metpo/metpo/releases/2026-06-02/metpo-full.json"
4040
},
4141
"nodes" : [ {
4242
"id" : "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass",
@@ -13093,7 +13093,7 @@
1309313093
"meta" : {
1309413094
"synonyms" : [ {
1309513095
"pred" : "hasRelatedSynonym",
13096-
"val" : "GC_42.65_57.0",
13096+
"val" : "GC_<=42.65",
1309713097
"meta" : {
1309813098
"basicPropertyValues" : [ {
1309913099
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -13113,7 +13113,7 @@
1311313113
"meta" : {
1311413114
"synonyms" : [ {
1311513115
"pred" : "hasRelatedSynonym",
13116-
"val" : "GC_>66.3",
13116+
"val" : "GC_42.65_57.0",
1311713117
"meta" : {
1311813118
"basicPropertyValues" : [ {
1311913119
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -13159,7 +13159,7 @@
1315913159
"meta" : {
1316013160
"synonyms" : [ {
1316113161
"pred" : "hasRelatedSynonym",
13162-
"val" : "GC_<=42.65",
13162+
"val" : "GC_>66.3",
1316313163
"meta" : {
1316413164
"basicPropertyValues" : [ {
1316513165
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -18705,7 +18705,7 @@
1870518705
"type" : "CLASS",
1870618706
"meta" : {
1870718707
"definition" : {
18708-
"val" : "A motility where the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope.",
18708+
"val" : "A motile in which the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope.",
1870918709
"meta" : {
1871018710
"basicPropertyValues" : [ {
1871118711
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -21905,7 +21905,7 @@
2190521905
"type" : "CLASS",
2190621906
"meta" : {
2190721907
"definition" : {
21908-
"val" : "A processed material that provides the nutrients and environmental conditions necessary for the cultivation of microorganisms in vitro. Growth media may be liquid (broth) or solid (agar-based) and are formulated to support the growth of specific types of organisms.",
21908+
"val" : "A material entity that provides the nutrients and environmental conditions necessary for the cultivation of microorganisms in vitro. Growth media may be liquid (broth) or solid (agar-based) and are formulated to support the growth of specific types of organisms.",
2190921909
"meta" : {
2191021910
"basicPropertyValues" : [ {
2191121911
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -21925,7 +21925,7 @@
2192521925
"type" : "CLASS",
2192621926
"meta" : {
2192721927
"definition" : {
21928-
"val" : "A two-step biological process in which ammonia is oxidized to nitrite (ammonia oxidation) and nitrite is oxidized to nitrate (nitrite oxidation).",
21928+
"val" : "A biological process in which ammonia is oxidized to nitrite (ammonia oxidation) and nitrite is oxidized to nitrate (nitrite oxidation), in two steps.",
2192921929
"meta" : {
2193021930
"basicPropertyValues" : [ {
2193121931
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22345,7 +22345,7 @@
2234522345
"type" : "CLASS",
2234622346
"meta" : {
2234722347
"definition" : {
22348-
"val" : "A phenotypic quality describing the arrangement pattern of flagella on a bacterial or archaeal cell. Parent class for METPO:1005031-1005037 (peritrichous, polar, amphitrichous, lophotrichous, monotrichous, lateral, subpolar).",
22348+
"val" : "A phenotype characterized by the arrangement pattern of flagella on a bacterial or archaeal cell (e.g. peritrichous, polar, amphitrichous, lophotrichous, monotrichous, lateral, subpolar).",
2234922349
"meta" : {
2235022350
"basicPropertyValues" : [ {
2235122351
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22369,7 +22369,7 @@
2236922369
"type" : "CLASS",
2237022370
"meta" : {
2237122371
"definition" : {
22372-
"val" : "Multiple flagella per cell (typically a tuft); often combined with polar attachment.",
22372+
"val" : "A flagellar arrangement in which multiple flagella (typically a tuft) are present per cell, often combined with polar attachment.",
2237322373
"meta" : {
2237422374
"basicPropertyValues" : [ {
2237522375
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22393,7 +22393,7 @@
2239322393
"type" : "CLASS",
2239422394
"meta" : {
2239522395
"definition" : {
22396-
"val" : "A phenotypic quality describing macroscopic colony characteristics (shape, margin, elevation, surface, color, size).",
22396+
"val" : "A phenotype characterized by macroscopic colony characteristics such as shape, margin, elevation, surface, colour, and size.",
2239722397
"meta" : {
2239822398
"basicPropertyValues" : [ {
2239922399
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22413,7 +22413,7 @@
2241322413
"type" : "CLASS",
2241422414
"meta" : {
2241522415
"definition" : {
22416-
"val" : "Subaspect of colony morphology describing the overall macroscopic colony outline as observed on solid medium.",
22416+
"val" : "A colony morphology characterized by the overall macroscopic colony outline as observed on solid medium.",
2241722417
"meta" : {
2241822418
"basicPropertyValues" : [ {
2241922419
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22433,7 +22433,7 @@
2243322433
"type" : "CLASS",
2243422434
"meta" : {
2243522435
"definition" : {
22436-
"val" : "Colony with a regular round outline.",
22436+
"val" : "A colony shape that has a regular round outline.",
2243722437
"meta" : {
2243822438
"basicPropertyValues" : [ {
2243922439
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22457,7 +22457,7 @@
2245722457
"type" : "CLASS",
2245822458
"meta" : {
2245922459
"definition" : {
22460-
"val" : "Colony with an irregular (non-round, non-rhizoid) outline.",
22460+
"val" : "A colony shape that has an irregular (non-round, non-rhizoid) outline.",
2246122461
"meta" : {
2246222462
"basicPropertyValues" : [ {
2246322463
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22477,7 +22477,7 @@
2247722477
"type" : "CLASS",
2247822478
"meta" : {
2247922479
"definition" : {
22480-
"val" : "Colony with thread-like or filamentous outline.",
22480+
"val" : "A colony shape that has a thread-like or filamentous outline.",
2248122481
"meta" : {
2248222482
"basicPropertyValues" : [ {
2248322483
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22497,7 +22497,7 @@
2249722497
"type" : "CLASS",
2249822498
"meta" : {
2249922499
"definition" : {
22500-
"val" : "Very small (pinpoint) colony, typically <1 mm diameter.",
22500+
"val" : "A colony shape that is very small (pinpoint), typically <1 mm in diameter.",
2250122501
"meta" : {
2250222502
"basicPropertyValues" : [ {
2250322503
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22517,7 +22517,7 @@
2251722517
"type" : "CLASS",
2251822518
"meta" : {
2251922519
"definition" : {
22520-
"val" : "Colony with branching, root-like outline.",
22520+
"val" : "A colony shape that has a branching, root-like outline.",
2252122521
"meta" : {
2252222522
"basicPropertyValues" : [ {
2252322523
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22537,7 +22537,7 @@
2253722537
"type" : "CLASS",
2253822538
"meta" : {
2253922539
"definition" : {
22540-
"val" : "Colony with raised opaque centre and translucent peripheral zone, resembling a fried egg.",
22540+
"val" : "A colony shape that has a raised opaque centre and a translucent peripheral zone, resembling a fried egg.",
2254122541
"meta" : {
2254222542
"basicPropertyValues" : [ {
2254322543
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22561,7 +22561,7 @@
2256122561
"type" : "CLASS",
2256222562
"meta" : {
2256322563
"definition" : {
22564-
"val" : "A phenotypic quality describing the ability to grow under elevated hydrostatic pressure.",
22564+
"val" : "A phenotype characterized by the ability to grow under elevated hydrostatic pressure.",
2256522565
"meta" : {
2256622566
"basicPropertyValues" : [ {
2256722567
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22588,7 +22588,7 @@
2258822588
"type" : "CLASS",
2258922589
"meta" : {
2259022590
"definition" : {
22591-
"val" : "An organism that requires or tolerates elevated hydrostatic pressure for growth.",
22591+
"val" : "A pressure tolerance in which an organism requires or tolerates elevated hydrostatic pressure for growth.",
2259222592
"meta" : {
2259322593
"basicPropertyValues" : [ {
2259422594
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22608,7 +22608,7 @@
2260822608
"type" : "CLASS",
2260922609
"meta" : {
2261022610
"definition" : {
22611-
"val" : "A phenotypic quality describing the ability to withstand ionizing or UV radiation.",
22611+
"val" : "A phenotype characterized by the ability to withstand ionizing or UV radiation.",
2261222612
"meta" : {
2261322613
"basicPropertyValues" : [ {
2261422614
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22632,7 +22632,7 @@
2263222632
"type" : "CLASS",
2263322633
"meta" : {
2263422634
"definition" : {
22635-
"val" : "A phenotypic quality describing the ability to grow under high osmotic pressure (non-NaCl).",
22635+
"val" : "A phenotype characterized by the ability to grow under high osmotic pressure (non-NaCl).",
2263622636
"meta" : {
2263722637
"basicPropertyValues" : [ {
2263822638
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22656,7 +22656,7 @@
2265622656
"type" : "CLASS",
2265722657
"meta" : {
2265822658
"definition" : {
22659-
"val" : "A phenotypic quality describing the ability to grow in the presence of elevated metal concentrations.",
22659+
"val" : "A phenotype characterized by the ability to grow in the presence of elevated metal concentrations.",
2266022660
"meta" : {
2266122661
"basicPropertyValues" : [ {
2266222662
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22680,7 +22680,7 @@
2268022680
"type" : "CLASS",
2268122681
"meta" : {
2268222682
"definition" : {
22683-
"val" : "A phenotypic quality describing the presence of an extracellular polysaccharide capsule.",
22683+
"val" : "A phenotype characterized by the presence of an extracellular polysaccharide capsule.",
2268422684
"meta" : {
2268522685
"basicPropertyValues" : [ {
2268622686
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22700,7 +22700,7 @@
2270022700
"type" : "CLASS",
2270122701
"meta" : {
2270222702
"definition" : {
22703-
"val" : "A phenotypic capability describing the ability to form surface-attached biofilms.",
22703+
"val" : "A phenotype characterized by the ability to form surface-attached biofilms.",
2270422704
"meta" : {
2270522705
"basicPropertyValues" : [ {
2270622706
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -22963,7 +22963,7 @@
2296322963
"type" : "CLASS",
2296422964
"meta" : {
2296522965
"definition" : {
22966-
"val" : "A phenotypic quality describing coagulase enzyme activity (clotting of blood plasma). Diagnostic marker, e.g. for Staphylococcus aureus.",
22966+
"val" : "A phenotype characterized by coagulase enzyme activity (clotting of blood plasma); a diagnostic marker, e.g. for Staphylococcus aureus.",
2296722967
"meta" : {
2296822968
"basicPropertyValues" : [ {
2296922969
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -23041,7 +23041,7 @@
2304123041
"type" : "CLASS",
2304223042
"meta" : {
2304323043
"definition" : {
23044-
"val" : "A phenotypic quality describing a microbe that thrives in low water-activity environments (typically aw < 0.85). Sibling concept of osmotic and metal tolerance; distinct from halophily and from osmotic tolerance because the limiting factor is water activity (aw) rather than solute concentration.",
23044+
"val" : "A phenotype characterized by a microbe that thrives in low water-activity environments (typically aw < 0.85), where the limiting factor is water activity (aw) rather than solute concentration; distinct from halophily and osmotic tolerance.",
2304523045
"meta" : {
2304623046
"basicPropertyValues" : [ {
2304723047
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
@@ -23068,7 +23068,7 @@
2306823068
"type" : "CLASS",
2306923069
"meta" : {
2307023070
"definition" : {
23071-
"val" : "A phenotypic quality describing a microbe that lives on the external surface of a host organism or substrate, as distinct from endosymbionts (which live inside the host). Captures host-association mode, not specific host taxonomy.",
23071+
"val" : "A phenotype characterized by a microbe that lives on the external surface of a host organism or substrate, as distinct from endosymbionts (which live inside the host); captures host-association mode, not specific host taxonomy.",
2307223072
"meta" : {
2307323073
"basicPropertyValues" : [ {
2307423074
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",

0 commit comments

Comments
 (0)