From f0ab6fbfc6bf012159747fc03afec43650af335c Mon Sep 17 00:00:00 2001 From: Mark Andrew Miller Date: Mon, 1 Jun 2026 21:59:29 -0400 Subject: [PATCH] fix(build): populate empty base artifacts; clarify README IRI wording (#463) The -base release products shipped with zero METPO terms (verified empty in the 2026-05-19 release and pre-#462 main; full artifacts unaffected). Root cause: the base pipeline used `remove --base-iri $(URIBASE)/METPO --axioms external`, but METPO term IRIs are https://w3id.org/metpo/ (lowercase, slash), so the filter never matched and every METPO axiom was stripped. The QC report rules already use the correct $(URIBASE)/metpo. Changed line 542 to match; metpo-base.* now carries all 1454 METPO classes (imported externals still excluded). Also reworded the README IRI paragraph (Copilot review on #462) to distinguish the resolver host (w3id.org) from the canonical identifier namespace (https://w3id.org/metpo/). Pre-existing defect, not introduced by #462. Fixes #463. Co-Authored-By: Claude Opus 4.8 --- README.md | 2 +- metpo-base.json | 31878 +++++++++++++++++++++++++++++++++++++++- metpo-base.obo | 11350 ++++++++++++++ metpo-base.owl | 22853 +++++++++++++++++++++++++++- src/ontology/Makefile | 2 +- 5 files changed, 66061 insertions(+), 24 deletions(-) diff --git a/README.md b/README.md index e263cf34..54768f29 100644 --- a/README.md +++ b/README.md @@ -34,7 +34,7 @@ The canonical IRI for every METPO term is under the `https://w3id.org/metpo/` na - The ontology prefix `METPO:` expands to `https://w3id.org/metpo/` - Ontology document IRI: `https://w3id.org/metpo.owl` (release products and version IRIs live under `https://w3id.org/metpo/`, e.g. `https://w3id.org/metpo/releases//metpo.owl`) -**Do not use `http://purl.obolibrary.org/obo/METPO_`.** METPO is not registered in the OBO Foundry, so those PURLs do not resolve (HTTP 404) and are not METPO identifiers. `https://w3id.org/` is the only canonical resolution base for METPO. (Term-IRI resolution behavior is still being finalized; see issues #450 and #435.) +**Do not use `http://purl.obolibrary.org/obo/METPO_`.** METPO is not registered in the OBO Foundry, so those PURLs do not resolve (HTTP 404) and are not METPO identifiers. The canonical METPO identifier namespace is `https://w3id.org/metpo/` (resolved through the `w3id.org` host); `purl.obolibrary.org` is not used by METPO. (Term-IRI resolution behavior is still being finalized; see issues #450 and #435.) ## Contact diff --git a/metpo-base.json b/metpo-base.json index 470922ae..893d6e82 100644 --- a/metpo-base.json +++ b/metpo-base.json @@ -42,37 +42,31873 @@ "version" : "https://w3id.org/metpo/releases/2026-06-02/metpo-base.json" }, "nodes" : [ { + "id" : "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "type" : "CLASS" + }, { + "id" : "https://w3id.org/metpo/0000001", + "lbl" : "obsolete Temperature", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000002", + "lbl" : "obsolete Salinity", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000003", + "lbl" : "obsolete pH", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000004", + "lbl" : "obsolete Oxygen", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000005", + "lbl" : "obsolete Trophic type", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000006", + "lbl" : "obsolete Motility", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000007", + "lbl" : "obsolete Sporulation", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000008", + "lbl" : "obsolete Pressure", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000009", + "lbl" : "obsolete GC content", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/000001", + "lbl" : "obsolete Temperature", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000010", + "lbl" : "obsolete Cell Width", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000011", + "lbl" : "obsolete Cell Length", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000012", + "lbl" : "obsolete Temperature Optimum", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000013", + "lbl" : "obsolete Temperature Range", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000014", + "lbl" : "obsolete pH Optimum", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000015", + "lbl" : "obsolete pH Range", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000016", + "lbl" : "obsolete NaCl Optimum", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000017", + "lbl" : "obsolete NaCl Range", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000018", + "lbl" : "obsolete pH delta", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000019", + "lbl" : "obsolete NaCl delta", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/000002", + "lbl" : "obsolete Salinity", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000020", + "lbl" : "obsolete Temperature Delta", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000021", + "lbl" : "obsolete METPO Morphology", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000022", + "lbl" : "obsolete Psychrophile", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000023", + "lbl" : "obsolete Psychrotolerant", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000024", + "lbl" : "obsolete Mesophilie", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000025", + "lbl" : "obsolete Thermotolerant", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000026", + "lbl" : "obsolete Thermophile", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000027", + "lbl" : "obsolete Extreme thermophile", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000028", + "lbl" : "obsolete Hyperthermophile", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000029", + "lbl" : "obsolete Extreme hyperthermophile", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/000003", + "lbl" : "obsolete pH", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000030", + "lbl" : "obsolete Halophile", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000031", + "lbl" : "obsolete Non-halophile", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000032", + "lbl" : "obsolete Slight halophile", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000033", + "lbl" : "obsolete Moderate halophile", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000034", + "lbl" : "obsolete Extreme halophile", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000035", + "lbl" : "obsolete Halotolerant", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000036", + "lbl" : "obsolete Haloalkaliphile", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000037", + "lbl" : "obsolete Extreme Acidophile", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000038", + "lbl" : "obsolete Acidophile", + "type" : "CLASS", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/OMO_0001000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + } + }, { + "id" : "https://w3id.org/metpo/0000039", + "lbl" : "obsolete Neutrophile", + "type" : "CLASS", + 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It is included in METPO to serve as the range for growth-related object properties." ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2004/02/skos/core#broadMatch", + "val" : "https://biolink.github.io/biolink-model/ProcessedMaterial" + } ] + } + }, { + "id" : "https://w3id.org/metpo/1005001", + "lbl" : "nitrification", + "type" : "CLASS", + "meta" : { + "definition" : { + "val" : "A biological process in which ammonia is oxidized to nitrite (ammonia oxidation) and nitrite is oxidized to nitrate (nitrite oxidation), in two steps.", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/GO_0019329" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/GO_0019332" + } ] + } + }, + "comments" : [ "MetaTraits maps to OMIT:0027217 (wrong ontology). Correct GO terms are GO:0019329 (ammonia oxidation) and GO:0019332 (nitrite oxidation)." ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "nitrification", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "https://metatraits.embl.de/" + } ] + } + } ] + } + }, { + "id" : "https://w3id.org/metpo/1005010", + "lbl" : "indole test", + "type" : "CLASS", + "meta" : { + "definition" : { + "val" : "An assay that tests the ability of an organism to produce indole from tryptophan.", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/MICRO_0000430" + } ] + } + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "indole test", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "https://metatraits.embl.de/" + } ] + } + } ] + } + }, { + "id" : 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"https://w3id.org/metpo/2000228", + "domainClassIds" : [ "https://w3id.org/metpo/1000525" ], + "rangeClassIds" : [ "https://w3id.org/metpo/1000526" ] + }, { + "predicateId" : "https://w3id.org/metpo/2000229", + "domainClassIds" : [ "https://w3id.org/metpo/1000525" ], + "rangeClassIds" : [ "https://w3id.org/metpo/1000526" ] + }, { + "predicateId" : "https://w3id.org/metpo/2000231", + "domainClassIds" : [ "https://w3id.org/metpo/1000525" ], + "rangeClassIds" : [ "https://w3id.org/metpo/1000526" ] + }, { + "predicateId" : "https://w3id.org/metpo/2000232", + "domainClassIds" : [ "https://w3id.org/metpo/1000525" ], + "rangeClassIds" : [ "https://w3id.org/metpo/1000526" ] + }, { + "predicateId" : "https://w3id.org/metpo/2000301", + "domainClassIds" : [ "https://w3id.org/metpo/1000525" ], + "rangeClassIds" : [ "https://w3id.org/metpo/1000527" ] + }, { + "predicateId" : "https://w3id.org/metpo/2000302", + "domainClassIds" : [ "https://w3id.org/metpo/1000525" ], + "rangeClassIds" : [ "https://w3id.org/metpo/1000527" ] + }, { + "predicateId" : "https://w3id.org/metpo/2000303", + "domainClassIds" : [ "https://w3id.org/metpo/1000525" ], + "rangeClassIds" : [ "https://w3id.org/metpo/1000527" ] + }, { + "predicateId" : "https://w3id.org/metpo/2000517", + "domainClassIds" : [ "https://w3id.org/metpo/1000525" ], + "rangeClassIds" : [ "https://w3id.org/metpo/1004005" ] + }, { + "predicateId" : "https://w3id.org/metpo/2000518", + "domainClassIds" : [ "https://w3id.org/metpo/1000525" ], + "rangeClassIds" : [ "https://w3id.org/metpo/1004005" ] } ] } ] } \ No newline at end of file diff --git a/metpo-base.obo b/metpo-base.obo index 91b3348a..e186eb10 100644 --- a/metpo-base.obo +++ b/metpo-base.obo @@ -2,6 +2,10 @@ format-version: 1.2 data-version: https://w3id.org/metpo/releases/2026-06-02/metpo-base.owl idspace: dce http://purl.org/dc/elements/1.1/ idspace: dcterms http://purl.org/dc/terms/ +idspace: metpo https://w3id.org/metpo/ +idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# +idspace: qudt http://qudt.org/schema/qudt/ +idspace: skos http://www.w3.org/2004/02/skos/core# ontology: https://w3id.org/metpo/metpo-base.owl property_value: dce:type IAO:8000001 property_value: dcterms:contributor https://orcid.org/0000-0001-9076-6066 @@ -16,3 +20,11349 @@ property_value: seeAlso https://bioportal.bioontology.org/ontologies/METPO property_value: seeAlso https://bioregistry.io/registry/metpo property_value: seeAlso https://github.com/berkeleybop/metpo +[Term] +id: metpo:0000001 +name: obsolete Temperature +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000002 +name: obsolete Salinity +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000003 +name: obsolete pH +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000004 +name: obsolete Oxygen +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000005 +name: obsolete Trophic type +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000006 +name: obsolete Motility +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000007 +name: obsolete Sporulation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000008 +name: obsolete Pressure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000009 +name: obsolete GC content +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000001 +name: obsolete Temperature +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000010 +name: obsolete Cell Width +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000011 +name: obsolete Cell Length +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000012 +name: obsolete Temperature Optimum +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000013 +name: obsolete Temperature Range +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000014 +name: obsolete pH Optimum +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000015 +name: obsolete pH Range +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000016 +name: obsolete NaCl Optimum +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000017 +name: obsolete NaCl Range +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000018 +name: obsolete pH delta +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000019 +name: obsolete NaCl delta +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000002 +name: obsolete Salinity +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000020 +name: obsolete Temperature Delta +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000021 +name: obsolete METPO Morphology +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000022 +name: obsolete Psychrophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000023 +name: obsolete Psychrotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000024 +name: obsolete Mesophilie +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000025 +name: obsolete Thermotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000026 +name: obsolete Thermophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000027 +name: obsolete Extreme thermophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000028 +name: obsolete Hyperthermophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000029 +name: obsolete Extreme hyperthermophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000003 +name: obsolete pH +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000030 +name: obsolete Halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000031 +name: obsolete Non-halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000032 +name: obsolete Slight halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000033 +name: obsolete Moderate halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000034 +name: obsolete Extreme halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000035 +name: obsolete Halotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000036 +name: obsolete Haloalkaliphile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000037 +name: obsolete Extreme Acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000038 +name: obsolete Acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000039 +name: obsolete Neutrophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000004 +name: obsolete Oxygen +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000040 +name: obsolete Alkaliphile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000041 +name: obsolete Acid Tolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000042 +name: obsolete Alkali Tolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000043 +name: obsolete Extreme Alkaliphile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000044 +name: obsolete Facultative acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000045 +name: obsolete Obligative acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000046 +name: obsolete Aerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000047 +name: obsolete Anaerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000048 +name: obsolete Facultative anaerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000049 +name: obsolete Facultative aerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000005 +name: obsolete Trophic type +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000050 +name: obsolete Microaerophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000051 +name: obsolete Aerotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000052 +name: obsolete Microaerotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000053 +name: obsolete Aerotolerant anaerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000054 +name: obsolete Obligate aerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000055 +name: obsolete Obligate anaerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000056 +name: obsolete Oxygenic phototroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000057 +name: obsolete Anoxygenic phototroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000058 +name: obsolete Autotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000059 +name: obsolete Photoautotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000006 +name: obsolete Motility +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000060 +name: obsolete Chemoautotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000061 +name: obsolete Heterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000062 +name: obsolete Photoheterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000063 +name: obsolete Chemoheterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000064 +name: obsolete Lithotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000065 +name: obsolete Organotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000066 +name: obsolete Phototroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000067 +name: obsolete Chemotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000068 +name: obsolete Oligotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000069 +name: obsolete Copiotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000007 +name: obsolete Sporulation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000070 +name: obsolete Lithoautotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000071 +name: obsolete Mixotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000072 +name: obsolete Lithoheterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000073 +name: obsolete Chemoorganoheterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000074 +name: obsolete Chemolithoautotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000075 +name: obsolete Methylotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000076 +name: obsolete Methanotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000077 +name: obsolete Carboxydotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000078 +name: obsolete Hydrogenotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000079 +name: obsolete Hydrogen oxidizer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000008 +name: obsolete Pressure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000080 +name: obsolete Hydrogen producer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000081 +name: obsolete Nitrogen fixer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000082 +name: obsolete Methanogen +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000083 +name: obsolete Sulfate reducer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000084 +name: obsolete Sulfur oxidizer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000085 +name: obsolete Denitrifier +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000086 +name: obsolete Capnophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000087 +name: obsolete Motile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000088 +name: obsolete Non-motile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000089 +name: obsolete Flagellated +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 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OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000127 +name: obsolete Piezotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000128 +name: obsolete Piezosensitive +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000129 +name: obsolete Obligate barophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000013 +name: obsolete Temperature Range +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000130 +name: obsolete Facultative barophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000131 +name: obsolete Hyperbarophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000132 +name: obsolete 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OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000139 +name: obsolete Pressure-resistant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000014 +name: obsolete pH Optimum +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000140 +name: obsolete Pressure-adapted +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000141 +name: obsolete Piezo-acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000142 +name: obsolete Piezo-alkaliphile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000143 +name: obsolete Piezo-halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000144 +name: obsolete 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obsolete Morphology +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000210 +name: obsolete Bacillus +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000211 +name: obsolete Branced +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000212 +name: obsolete Coccobacillus +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000213 +name: obsolete Coccus +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000214 +name: obsolete Crescent +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000215 +name: obsolete Curved +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000216 +name: obsolete Curved Spiral +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000217 +name: obsolete Diplococcus +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000218 +name: obsolete Disc +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000219 +name: obsolete Dumbbell +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000022 +name: obsolete Other +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000220 +name: obsolete Ellipsoidal +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000221 +name: obsolete Filament +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000222 +name: obsolete Flask +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000223 +name: obsolete Fusiform +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000224 +name: obsolete Helical +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000225 +name: obsolete Irregular +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000226 +name: obsolete Oval +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000227 +name: obsolete Ovoid +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000228 +name: obsolete Pleomorphic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000229 +name: obsolete Ring +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000023 +name: obsolete Psychrophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000230 +name: obsolete Rod +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000231 +name: obsolete Sphere +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000232 +name: obsolete Spindle +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000233 +name: obsolete Spiral +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000234 +name: obsolete Spirochete +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + 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OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000241 +name: obsolete Vibrio +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000242 +name: obsolete Environmental Parameter +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000243 +name: obsolete Growth Condition +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000244 +name: obsolete Physiological Trait +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000245 +name: obsolete Metabolic Classification +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000246 +name: obsolete Cellular Characteristic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000247 +name: obsolete Taxonomic Feature +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000248 +name: obsolete Microbial Adaptation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000249 +name: obsolete Growth Parameter +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000025 +name: obsolete Mesophilie +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000250 +name: obsolete Structural Feature +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000251 +name: obsolete Temperature Adaptation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000252 +name: obsolete Salinity Adaptation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000253 +name: obsolete pH Adaptation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000254 +name: obsolete Oxygen Requirement +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000255 +name: obsolete Carbon Source Utilization +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000256 +name: obsolete Energy Acquisition Mode +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000257 +name: obsolete Electron Donor Type +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000258 +name: obsolete Motility Mechanism +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000259 +name: obsolete Motility Structure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000026 +name: obsolete Thermotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000260 +name: obsolete Bacterial Spore Type +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000261 +name: obsolete Fungal Spore Type +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000262 +name: obsolete Reproductive Structure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000263 +name: obsolete Dormancy Structure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000264 +name: obsolete Pressure Adaptation Type +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000265 +name: obsolete Pressure Tolerance Range +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000266 +name: obsolete Genomic Feature +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000267 +name: obsolete Cell Dimension +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000268 +name: obsolete Optimal Growth Parameter +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000269 +name: obsolete Growth Range Parameter +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000027 +name: obsolete Thermophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 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Property +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000277 +name: obsolete Functional Classification +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000278 +name: obsolete Classification Property +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000279 +name: obsolete METPO Biological Process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000028 +name: obsolete Extreme thermophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000280 +name: obsolete Measurable Property +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000281 +name: obsolete Gram-stain negative +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0000282 +name: obsolete Gram-stain positive +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000029 +name: obsolete Hyperthermophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000030 +name: obsolete Extreme hyperthermophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000031 +name: obsolete Halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000032 +name: obsolete Non-halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000033 +name: obsolete Slight halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000034 +name: obsolete Moderate halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000035 +name: obsolete Extreme halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000036 +name: obsolete Halotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000037 +name: obsolete Haloalkaliphile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000038 +name: obsolete Extreme Acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000039 +name: obsolete Acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000040 +name: obsolete Neutrophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000041 +name: obsolete Alkaliphile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000042 +name: obsolete Acid Tolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000043 +name: obsolete Alkali Tolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000044 +name: obsolete Extreme Alkaliphile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000045 +name: obsolete Facultative acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000046 +name: obsolete Obligative acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000047 +name: obsolete Aerobe +is_a: oboInOwl:ObsoleteClass 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obsolete Aerotolerant anaerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000055 +name: obsolete Obligate aerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000056 +name: obsolete Obligate anaerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000057 +name: obsolete Oxygenic phototroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000058 +name: obsolete Anoxygenic phototroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000059 +name: obsolete Autotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000060 +name: obsolete Photoautotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000061 +name: obsolete Chemoautotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000062 +name: obsolete Heterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000063 +name: obsolete Photoheterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000064 +name: obsolete Chemoheterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000065 +name: obsolete Lithotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000066 +name: obsolete Organotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000067 +name: obsolete Phototroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000068 +name: obsolete Chemotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000069 +name: obsolete Oligotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000070 +name: obsolete Copiotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000071 +name: obsolete Lithoautotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000072 +name: obsolete Mixotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000073 +name: obsolete Lithoheterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000074 +name: obsolete Chemoorganoheterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000075 +name: obsolete Chemolithoautotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000076 +name: obsolete Methylotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000077 +name: obsolete Methanotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000078 +name: obsolete Carboxydotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000079 +name: obsolete Hydrogenotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000080 +name: obsolete Hydrogen oxidizer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000081 +name: obsolete Hydrogen producer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000082 +name: obsolete Nitrogen fixer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000083 +name: obsolete Methanogen +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000084 +name: obsolete Sulfate reducer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000085 +name: obsolete Sulfur oxidizer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000086 +name: obsolete Denitrifier +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000087 +name: obsolete Capnophile +is_a: oboInOwl:ObsoleteClass 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oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000095 +name: obsolete Gliding +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000096 +name: obsolete Twitching +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000097 +name: obsolete Sliding +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000098 +name: obsolete Swarming +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000099 +name: obsolete Endospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000100 +name: obsolete Exospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0001000 +name: obsolete sensitivity to oxygen +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0001001 +name: obsolete sensitivity toward +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0001002 +name: obsolete 'organismal quality' +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0001003 +name: obsolete 'physicial object quality' +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0001004 +name: obsolete 'quality' +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0001006 +name: obsolete size +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0001007 +name: obsolete 1-D extent +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0001008 +name: obsolete width +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0001009 +name: obsolete length +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000101 +name: obsolete Myxospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0001010 +name: obsolete 'prokaryotic metabolically differentiated cell' +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0001012 +name: obsolete heterotrophy +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0001013 +name: obsolete structure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:0001014 +name: obsolete spore type +is_a: oboInOwl:ObsoleteClass 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+is_obsolete: true + +[Term] +id: metpo:0001021 +name: obsolete cell by chemical produced +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000103 +name: obsolete Conidia +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000104 +name: obsolete Sporangiospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000105 +name: obsolete Zygospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000106 +name: obsolete Akinetes +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000107 +name: obsolete Chlamydospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000108 +name: obsolete Sporocysts +is_a: oboInOwl:ObsoleteClass 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oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000116 +name: obsolete Aleuriospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000117 +name: obsolete Stylospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000118 +name: obsolete Sclerotia +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000119 +name: obsolete Zoospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000120 +name: obsolete Teliospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000121 +name: obsolete Urediniospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000122 +name: obsolete Pycnidiospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000123 +name: obsolete Acriospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000124 +name: obsolete Aplanospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000125 +name: obsolete Statismospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000126 +name: obsolete Barotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000127 +name: obsolete Piezophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000128 +name: obsolete Piezotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + 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oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000136 +name: obsolete Extreme piezophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000137 +name: obsolete Stenopiezic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000138 +name: obsolete Eurypiezic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000139 +name: obsolete Pressure-sensitive +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000140 +name: obsolete Pressure-resistant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000141 +name: obsolete Pressure-adapted +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000142 +name: obsolete Piezo-acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000143 +name: obsolete Piezo-alkaliphile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000144 +name: obsolete Piezo-halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000145 +name: obsolete Piezo-psychrophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000146 +name: obsolete Piezo-thermophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000147 +name: obsolete Piezo-lithoautotrophe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000148 +name: obsolete Piezo-chemoheterotroph +is_a: oboInOwl:ObsoleteClass 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metpo:000155 +name: obsolete GC% high ( > 66.3) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000156 +name: obsolete Cell width uM very low (< 0.5) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000157 +name: obsolete Cell width uM low (0.5 - 0.65) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000158 +name: obsolete Cell width uM mid (0.65 - 0.9) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000159 +name: obsolete Cell width uM high (> 0.9) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000160 +name: obsolete Cell length uM very low (<= 1.3) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000161 +name: obsolete Cell length uM low (1.3 - 2) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000162 +name: obsolete Cell length uM mid (2 - 3) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000163 +name: obsolete Cell length uM high (> 3) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000164 +name: obsolete Temperature Optimum C very low (<= 10) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000165 +name: obsolete Temperature Optimum C low (10 - 22) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000166 +name: obsolete Temperature Optimum C mid1 (22 - 27) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000167 +name: obsolete Temperature Optimum C mid2 (27 - 30) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000168 +name: obsolete Temperature Optimum C mid3 (30 - 34) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000169 +name: obsolete Temperature Optimum C mid4 (34 - 40) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000170 +name: obsolete Temperature Optimum C high (> 40) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000171 +name: obsolete Temperature Range C very low (<= 10) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000172 +name: obsolete Temperature Range C low (10 - 22) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000173 +name: obsolete Temperature Range C mid1 (22 - 27) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000174 +name: obsolete Temperature Range C mid2 (27 - 30) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000175 +name: obsolete Temperature Range C mid3 (30 - 34) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000176 +name: obsolete Temperature Range C mid4 (34 - 40) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000177 +name: obsolete Temperature Range C high (> 40) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000178 +name: obsolete pH Optimum low (0 - 6) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000179 +name: obsolete pH Optimum mid1 (6 - 7) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000180 +name: obsolete pH Optimum mid2 (7 - 8) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000181 +name: obsolete pH Optimum high (8 - 14) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000182 +name: obsolete pH Range very low (0 - 4) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000183 +name: obsolete pH Range low (4 - 6) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000184 +name: obsolete pH Range mid1 (6 - 7) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000185 +name: obsolete pH Range mid2 (7 - 8) 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obsolete % NaCl delta mid2 (3 - 8) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000205 +name: obsolete % NaCl delta high (>= 8) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000206 +name: obsolete Temperature C delta very low (1 - 5) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000207 +name: obsolete Temperature C delta low (5 - 10) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000208 +name: obsolete Temperature C delta mid1 (10 - 20) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000209 +name: obsolete Temperature C delta mid2 (20 - 30) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000210 +name: obsolete Temperature C delta high (>= 30) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000211 +name: obsolete bacillus +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000212 +name: obsolete branced +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000213 +name: obsolete coccobacillus +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000214 +name: obsolete coccus +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000215 +name: obsolete crescent +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000216 +name: obsolete curved +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] 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+[Term] +id: metpo:000224 +name: obsolete fusiform +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000225 +name: obsolete helical +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000226 +name: obsolete irregular +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000227 +name: obsolete oval +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000228 +name: obsolete ovoid +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000229 +name: obsolete pleomorphic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000230 +name: obsolete ring +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000231 +name: obsolete rod +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000232 +name: obsolete sphere +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000233 +name: obsolete spindle +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000234 +name: obsolete spiral +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000235 +name: obsolete spirochete +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000236 +name: obsolete spore +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000237 +name: obsolete square +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000238 +name: obsolete star +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000239 +name: obsolete star - dumbbell - pleomorphic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000240 +name: obsolete tailed +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000241 +name: obsolete triangular +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000242 +name: obsolete vibrio +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000243 +name: obsolete Environmental Parameter +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000244 +name: obsolete Growth Condition +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000245 +name: obsolete Physiological Trait +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000246 +name: obsolete Metabolic Classification +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000247 +name: obsolete Cellular Characteristic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000248 +name: obsolete Taxonomic Feature +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000249 +name: obsolete Microbial Adaptation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000250 +name: obsolete Growth Parameter +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000251 +name: obsolete Structural Feature +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000252 +name: obsolete Temperature Adaptation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000253 +name: obsolete Salinity Adaptation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000254 +name: obsolete pH Adaptation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000255 +name: obsolete Oxygen Requirement +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000256 +name: obsolete Carbon Source Utilization +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000257 +name: obsolete Energy Acquisition Mode +is_a: oboInOwl:ObsoleteClass 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metpo:000264 +name: obsolete Dormancy Structure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000265 +name: obsolete Pressure Adaptation Type +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000266 +name: obsolete Pressure Tolerance Range +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000267 +name: obsolete GenomicFeature +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000268 +name: obsolete Cell Dimension +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000269 +name: obsolete Optimal Growth Parameter +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000270 +name: obsolete Growth Range Parameter +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000271 +name: obsolete Growth Tolerance Metric +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000272 +name: obsolete Cell Shape +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000273 +name: obsolete Cell Arrangement +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:000274 +name: obsolete Colony Morphology +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000001 +name: obsolete acid-fast +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000002 +name: obsolete acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000003 +name: obsolete active transport +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000004 +name: obsolete adaptation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000005 +name: obsolete adaptive trait +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000006 +name: obsolete adhesin +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000007 +name: obsolete adhesion structure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000008 +name: obsolete aerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000009 +name: obsolete aerobic respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000010 +name: obsolete aerotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000011 +name: obsolete aggregate +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000012 +name: obsolete akinete +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000013 +name: obsolete alkaliphile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000014 +name: obsolete ammonification +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000015 +name: obsolete amylolysis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000016 +name: obsolete anaerobe +is_a: oboInOwl:ObsoleteClass 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+[Term] +id: metpo:1000023 +name: obsolete arthrospore +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000024 +name: obsolete ascospore +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000025 +name: obsolete autotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000026 +name: obsolete autotrophic process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000027 +name: obsolete auxotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000028 +name: obsolete axial filament +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000029 +name: obsolete bacillus +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000030 +name: obsolete barophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000031 +name: obsolete barotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000032 +name: obsolete basidiospore +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000033 +name: obsolete binary fission +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000034 +name: obsolete biofilm +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000035 +name: obsolete biofilm component +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000036 +name: obsolete biofilm formation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000037 +name: obsolete biogeochemical cycling +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000038 +name: obsolete bioluminescence +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000039 +name: obsolete budding +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000040 +name: obsolete buoyancy structure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000041 +name: obsolete capnophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000042 +name: obsolete capsule +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000043 +name: obsolete carbon fixation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000044 +name: obsolete carbon source +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000045 +name: obsolete carboxydotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000046 +name: obsolete cell arrangement +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000047 +name: obsolete cell envelope +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000048 +name: obsolete cell length category +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000049 +name: obsolete cell shape +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000050 +name: obsolete cell size +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000051 +name: obsolete cell wall characteristic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000052 +name: obsolete cell wall component +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000053 +name: obsolete cell width category +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000054 +name: obsolete cellular characteristic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000055 +name: obsolete cellular component +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000056 +name: obsolete cellular process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000057 +name: obsolete cellular product +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000058 +name: obsolete cellulolysis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000059 +name: phenotype +def: "A quality that differentiates specific instances of a species from other instances of the same species." [] {IAO:0000119="PHIPO:0000505"} +is_a: metpo:1000188 ! quality +property_value: IAO:0000117 "Anthea Guo" xsd:string +property_value: IAO:0000117 "Luke Wang" xsd:string +property_value: skos:closeMatch https://biolink.github.io/biolink-model/PhenotypicQuality + +[Term] +id: metpo:1000060 +name: metabolism +def: "A biological process that maintain life in an organism." [] {IAO:0000119="https://purl.dsmz.de/schema/MetabolicProcess", IAO:0000119="GO:0008152"} +is_a: metpo:1000630 ! biological process +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000061 +name: obsolete chemoheterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000062 +name: obsolete chemotaxis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000063 +name: obsolete chlamydospore +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000064 +name: obsolete class +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000065 +name: obsolete clinically relevant feature +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000066 +name: obsolete coccus +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000067 +name: obsolete cold shock protein +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000068 +name: obsolete cold shock response +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000069 +name: obsolete colonization +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000070 +name: obsolete colony elevation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000071 +name: obsolete colony margin +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000072 +name: obsolete colony morphology +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000073 +name: obsolete colony texture +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000074 +name: obsolete commensalism +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000075 +name: obsolete community behavior +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000076 +name: obsolete community structure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000077 +name: obsolete compatible solute +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000078 +name: obsolete competence +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000079 +name: obsolete component +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000080 +name: obsolete conidium +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000081 +name: obsolete conjugation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000082 +name: obsolete CRISPR +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000083 +name: obsolete culturability +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000084 +name: obsolete cyst +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000085 +name: obsolete death phase +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000086 +name: obsolete denitrification +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000087 +name: obsolete developmental process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000088 +name: obsolete diagnostic enzyme +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000089 +name: obsolete diagnostic feature +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000090 +name: obsolete diazotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000091 +name: obsolete differentiation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000092 +name: obsolete dimorphism +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000093 +name: obsolete disc-shaped cell +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000094 +name: obsolete domain +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000095 +name: obsolete dormancy +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000096 +name: obsolete dormancy structure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000097 +name: obsolete dumbbell-shaped cell +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000098 +name: obsolete ecological niche +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000099 +name: obsolete ecological process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000100 +name: obsolete ecological trait +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000101 +name: obsolete ectosymbiosis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000102 +name: obsolete electron acceptor +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000103 +name: obsolete electron donor +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000104 +name: obsolete endospore +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000105 +name: obsolete endosymbiosis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000106 +name: obsolete energy metabolism process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000107 +name: obsolete enzyme activity +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000108 +name: obsolete epigenetic modification +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000109 +name: obsolete evolutionary process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000110 +name: obsolete exospore +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000111 +name: obsolete exponential phase +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000112 +name: obsolete extracellular +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000113 +name: obsolete extracellular polysaccharide +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000114 +name: obsolete extreme halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000115 +name: obsolete extremophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000116 +name: obsolete facultative +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000117 +name: obsolete facultative anaerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000118 +name: obsolete family +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000119 +name: obsolete fastidious +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000120 +name: obsolete fermentation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000121 +name: obsolete filamentous +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000122 +name: obsolete fimbriae +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000123 +name: obsolete flagellum +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000124 +name: obsolete flask-shaped cell +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000125 +name: obsolete fungal spore +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000126 +name: obsolete gas vesicle +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000127 +name: GC content +def: "A quality that is describing the percentage of guanine and cytosine nucleotides in genomic DNA, calculated as the ratio of GC base pairs to total base pairs." [] {IAO:0000119="https://purl.dsmz.de/schema/GCContent"} +synonym: "GC percentage" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000188 ! quality +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000128 +name: obsolete high GC content +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000129 +name: obsolete low GC content +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000130 +name: obsolete lower-mid GC content +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000131 +name: obsolete upper-mid GC content +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000132 +name: obsolete generation time +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000133 +name: obsolete genetic element +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000134 +name: obsolete genetic exchange +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000135 +name: obsolete genetic process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000136 +name: obsolete genome size +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000137 +name: obsolete genomic element +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000138 +name: obsolete genomic island +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000139 +name: obsolete genomic trait +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000140 +name: obsolete genus +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000141 +name: obsolete gliding motility +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000142 +name: obsolete global regulator +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000143 +name: obsolete Gram-negative +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000144 +name: obsolete Gram-positive +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000145 +name: obsolete Gram stain +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000146 +name: obsolete growth characteristic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000147 +name: obsolete growth conditions constraints +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000148 +name: obsolete growth pattern +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000149 +name: obsolete growth rate +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000150 +name: obsolete habitat +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000151 +name: obsolete halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000152 +name: obsolete halotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000153 +name: obsolete heat shock protein +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000154 +name: obsolete heat shock response +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000155 +name: obsolete hemolysis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000156 +name: obsolete heterocyst +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000157 +name: obsolete heterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000158 +name: obsolete holdfast +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000159 +name: obsolete horizontal gene transfer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000160 +name: obsolete hydrolase +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000161 +name: obsolete hyperthermophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000162 +name: obsolete inclusion body +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000163 +name: obsolete infection +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000164 +name: obsolete interaction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000165 +name: obsolete interaction with a phage +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000166 +name: obsolete interaction with an environment +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000167 +name: obsolete interaction with host +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000168 +name: obsolete interaction within a community +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000169 +name: obsolete intracellular +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000170 +name: obsolete invasion +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000171 +name: obsolete laboratory characteristic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000172 +name: obsolete lag phase +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000173 +name: obsolete life cycle +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000174 +name: obsolete life cycle phase +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000175 +name: obsolete lipolysis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000176 +name: obsolete lipopolysaccharide +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000177 +name: obsolete localization +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000178 +name: obsolete lysogeny +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000179 +name: obsolete macroscopic trait +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000180 +name: obsolete magnetotaxis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000181 +name: obsolete mesophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000182 +name: obsolete metabolic partner +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000183 +name: obsolete metabolic trait +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000184 +name: obsolete methanogenesis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000185 +name: obsolete methylation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000186 +name: material entity +def: "An object or portion of a substance or mixture of substances that consists of matter" [] {IAO:0000119="BFO:0000040"} +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000187 +name: obsolete process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000188 +name: quality +def: "A characteristic of an entity that depends on the entity's existence, size, color, and physiological traits." [] + +[Term] +id: metpo:1000189 +name: obsolete system +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000190 +name: obsolete microaerophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000191 +name: obsolete mobile genetic element +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000192 +name: obsolete moderate halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000193 +name: obsolete morphological trait +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000194 +name: obsolete motility process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000195 +name: obsolete motility structure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000196 +name: obsolete mutualism +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000197 +name: obsolete mycolic acid +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000198 +name: obsolete mycorrhization +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000199 +name: obsolete neutrophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000200 +name: obsolete nitrification +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000201 +name: obsolete nitrogen fixation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000202 +name: obsolete nodulation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000203 +name: obsolete nucleoid +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000204 +name: obsolete nutrient utilization +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000205 +name: obsolete obligate +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000206 +name: obsolete obligate aerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000207 +name: obsolete obligate anaerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000208 +name: obsolete oospore +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000209 +name: obsolete order +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000210 +name: obsolete microbe characterized by growth conditions +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000211 +name: obsolete microbe characterized by nutritional requirement +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000212 +name: obsolete microbe characterized by product produced +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000213 +name: obsolete microbe characterized by relation to oxygen +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000214 +name: obsolete microbe characterized by relation to ph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000215 +name: obsolete microbe characterized by relation to pressure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000216 +name: obsolete microbe characterized by relation to salt concentration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000217 +name: obsolete microbe characterized by relation to temperature +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000218 +name: obsolete microbe characterized by shape +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000219 +name: obsolete microbe characterized by trophic type +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000220 +name: obsolete osmophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000221 +name: obsolete osmoregulation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000222 +name: obsolete oxidative stress response +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000223 +name: obsolete oxidoreductase +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000224 +name: obsolete oxygen requirement +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000225 +name: obsolete oxygenic photosynthesis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000226 +name: obsolete pan-genome +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000227 +name: obsolete parasitism +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000228 +name: obsolete passive transport +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000229 +name: obsolete pathogenicity +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000230 +name: obsolete pathogenicity island +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000231 +name: obsolete peptidoglycan +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000232 +name: pH delta +is_a: metpo:1000531 ! pH phenotype with numerical limits +is_a: metpo:1000534 ! delta phenotype with numerical limits + +[Term] +id: metpo:1000233 +name: obsolete pH optimum (growth range) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000234 +name: obsolete pH preference +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000235 +name: obsolete pH range (growth tolerance) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000236 +name: obsolete pH tolerance +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000237 +name: obsolete phage defense +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000238 +name: obsolete photoautotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000239 +name: obsolete photoheterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000240 +name: obsolete photosynthesis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000241 +name: obsolete phototaxis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000242 +name: obsolete phylum +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000243 +name: obsolete physiological process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000244 +name: obsolete physiological state +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000245 +name: obsolete physiological trait +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000246 +name: obsolete piezophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000247 +name: obsolete pigment +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000248 +name: obsolete pigmentation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000249 +name: obsolete pilus +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000250 +name: obsolete plant growth promotion +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000251 +name: obsolete plasmid +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000252 +name: obsolete pleomorphism +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000253 +name: obsolete process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000254 +name: obsolete prophage +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000255 +name: obsolete prostheca +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000256 +name: obsolete protein synthesis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000257 +name: obsolete proteolysis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000258 +name: obsolete prototroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000259 +name: obsolete psychrophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000260 +name: obsolete qualifier +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000261 +name: obsolete quorum sensing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000262 +name: obsolete regulation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000263 +name: obsolete regulatory mechanism +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000264 +name: obsolete reproductive process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000265 +name: obsolete reproductive structure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000266 +name: obsolete resistance mechanism +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000267 +name: obsolete respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000268 +name: obsolete restriction-modification system +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000269 +name: obsolete ribosome +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000270 +name: obsolete S-layer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000271 +name: obsolete salinity delta +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000272 +name: obsolete salinity preference +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000273 +name: obsolete secondary metabolite +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000274 +name: obsolete secretion +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000275 +name: obsolete secretion system +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000276 +name: obsolete sheathed +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000277 +name: obsolete siderophore +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000278 +name: obsolete sigma factor +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000279 +name: obsolete signaling +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000280 +name: obsolete slime layer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000281 +name: obsolete specialized cell +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000282 +name: obsolete species +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000283 +name: obsolete spirillum +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000284 +name: obsolete spirochete +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000285 +name: obsolete sporangiospore +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000286 +name: obsolete sporulation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000287 +name: obsolete square cell +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000288 +name: obsolete stalk +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000289 +name: obsolete star-shaped cell +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000290 +name: obsolete stationary phase +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000291 +name: obsolete storage structure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000292 +name: obsolete strain +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000293 +name: obsolete stress response +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000294 +name: obsolete structure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000295 +name: obsolete sulfate reducer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000296 +name: obsolete swarming +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000297 +name: obsolete symbiosis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000298 +name: obsolete symbiotic process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000299 +name: obsolete syntrophy +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000300 +name: obsolete taxonomic identifier +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000301 +name: obsolete taxonomic rank +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000302 +name: obsolete teichoic acid +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000303 +name: temperature delta +is_a: metpo:1000533 ! temperature phenotype with numerical limits +is_a: metpo:1000534 ! delta phenotype with numerical limits + +[Term] +id: metpo:1000304 +name: temperature optimum +def: "A temperature phenotype with numerical limits that represents the conditions at which an organism exhibits the most efficient growth and reproduction." [] {IAO:0000119="https://purl.dsmz.de/schema/OptimumTemperature"} +is_a: metpo:1000533 ! temperature phenotype with numerical limits +is_a: metpo:1000536 ! optimum phenotype with numerical limits +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000305 +name: obsolete temperature preference +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000306 +name: temperature range +is_a: metpo:1000533 ! temperature phenotype with numerical limits +is_a: metpo:1000535 ! growth range phenotype with numerical limits + +[Term] +id: metpo:1000307 +name: obsolete thermal tolerance +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000308 +name: obsolete thermophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000309 +name: obsolete toxin +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000310 +name: obsolete transcription factor +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000311 +name: obsolete transduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000312 +name: obsolete transferase +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000313 +name: obsolete transformation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000314 +name: obsolete transport system +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000315 +name: obsolete transposon +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000316 +name: obsolete triangular cell +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000317 +name: obsolete trichome +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000318 +name: obsolete twitching motility +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000319 +name: obsolete two-component system +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000320 +name: obsolete viable but non-culturable +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000321 +name: obsolete vibrio +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000322 +name: obsolete virulence +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000323 +name: obsolete virulence factor +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000324 +name: obsolete virulence process +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000325 +name: obsolete xylanolysis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000326 +name: obsolete zoospore +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000327 +name: obsolete zygospore +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 OMO:0001000 +is_obsolete: true + +[Term] +id: metpo:1000328 +name: obsolete pressure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000329 +name: obsolete temperature optimum (metabolic activity) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000330 +name: obsolete temperature range (metabolic viability) +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000331 +name: pH optimum +def: "A pH phenotype with numerical limits that represents the conditions at which an organism exhibits the most efficient growth and reproduction." [] +is_a: metpo:1000531 ! pH phenotype with numerical limits +is_a: metpo:1000536 ! optimum phenotype with numerical limits + +[Term] +id: metpo:1000332 +name: pH range +is_a: metpo:1000531 ! pH phenotype with numerical limits +is_a: metpo:1000535 ! growth range phenotype with numerical limits +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000333 +name: NaCl optimum +def: "A salinity phenotype with numerical limits that supports the most efficient growth and reproduction of an organism." [] {IAO:0000119="https://purl.dsmz.de/schema/OptimumSalinity"} +is_a: metpo:1000532 ! salinity phenotype with numerical limits +is_a: metpo:1000536 ! optimum phenotype with numerical limits +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000334 +name: NaCl range +is_a: metpo:1000532 ! salinity phenotype with numerical limits +is_a: metpo:1000535 ! growth range phenotype with numerical limits +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000335 +name: NaCl delta +is_a: metpo:1000532 ! salinity phenotype with numerical limits +is_a: metpo:1000534 ! delta phenotype with numerical limits + +[Term] +id: metpo:1000336 +name: obsolete psychrotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000337 +name: obsolete thermotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000338 +name: obsolete extreme thermophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000339 +name: obsolete extreme hyperthermophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000340 +name: obsolete non-halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000341 +name: obsolete slight halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000342 +name: obsolete haloalkaliphile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000343 +name: obsolete extreme acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000344 +name: obsolete acid tolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000345 +name: obsolete alkali tolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000346 +name: obsolete extreme alkaliphile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000347 +name: obsolete facultative acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000348 +name: obsolete obligative acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000349 +name: obsolete facultative aerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000350 +name: obsolete microaerophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000351 +name: obsolete microaerotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000352 +name: obsolete aerotolerant anaerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000353 +name: obsolete obligate aerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000354 +name: obsolete obligate anaerobe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000355 +name: obsolete oxygenic phototroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000356 +name: obsolete anoxygenic phototroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000357 +name: obsolete chemoautotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000358 +name: obsolete chemoheterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000359 +name: obsolete lithotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000360 +name: obsolete organotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000361 +name: obsolete phototroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000362 +name: obsolete chemotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000363 +name: obsolete oligotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000364 +name: obsolete copiotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000365 +name: obsolete lithoautotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000366 +name: obsolete mixotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000367 +name: obsolete lithoheterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000368 +name: obsolete chemoorganoheterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000369 +name: obsolete chemolithoautotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000370 +name: obsolete methylotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000371 +name: obsolete methanotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000372 +name: obsolete hydrogenotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000373 +name: obsolete hydrogen oxidizer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000374 +name: obsolete hydrogen producer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000375 +name: obsolete nitrogen fixer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000376 +name: obsolete methanogen +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000377 +name: obsolete sulfur oxidizer +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000378 +name: obsolete denitrifier +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000379 +name: obsolete motile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000380 +name: obsolete non-motile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000381 +name: obsolete flagellated +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000382 +name: obsolete peritrichous +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000383 +name: obsolete lophotrichous +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000384 +name: obsolete monotrichous +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000385 +name: obsolete ciliated +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000386 +name: obsolete gliding +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000387 +name: obsolete twitching +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000388 +name: obsolete sliding +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000389 +name: obsolete myxospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000390 +name: obsolete conidia +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000391 +name: obsolete chlamydospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000392 +name: obsolete sporocysts +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000393 +name: obsolete hypnospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000394 +name: obsolete gemmae +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000395 +name: obsolete azygospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000396 +name: obsolete aleuriospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000397 +name: obsolete stylospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000398 +name: obsolete sclerotia +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000399 +name: obsolete teliospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000400 +name: obsolete urediniospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000401 +name: obsolete pycnidiospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000402 +name: obsolete acriospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000403 +name: obsolete aplanospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000404 +name: obsolete statismospores +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000405 +name: obsolete piezotolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000406 +name: obsolete piezosensitive +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000407 +name: obsolete obligate barophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000408 +name: obsolete facultative barophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000409 +name: obsolete hyperbarophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000410 +name: obsolete hypobarophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000411 +name: obsolete atmospheric pressure-adapted +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000412 +name: obsolete moderate piezophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000413 +name: obsolete extreme piezophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000414 +name: obsolete stenopiezic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000415 +name: obsolete eurypiezic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000416 +name: obsolete pressure-sensitive +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000417 +name: obsolete pressure-resistant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000418 +name: obsolete pressure-adapted +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000419 +name: obsolete piezo-acidophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000420 +name: obsolete piezo-alkaliphile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000421 +name: obsolete piezo-halophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000422 +name: obsolete piezo-psychrophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000423 +name: obsolete piezo-thermophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000424 +name: obsolete piezo-lithoautotrophe +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000425 +name: obsolete piezo-chemoheterotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000426 +name: obsolete piezo-oligotroph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000427 +name: obsolete piezo-endolithic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000428 +name: obsolete piezo-tolerant +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000429 +name: GC low +synonym: "GC_<=42.65" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000127 ! GC content +property_value: metpo:range_max "42.65" xsd:string + +[Term] +id: metpo:1000430 +name: GC mid1 +synonym: "GC_42.65_57.0" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000127 ! GC content +property_value: metpo:range_max "57" xsd:string +property_value: metpo:range_min "42.65" xsd:string + +[Term] +id: metpo:1000431 +name: GC mid2 +synonym: "GC_57.0_66.3" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000127 ! GC content +property_value: metpo:range_max "66.3" xsd:string +property_value: metpo:range_min "57" xsd:string + +[Term] +id: metpo:1000432 +name: GC high +synonym: "GC_>66.3" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000127 ! GC content +property_value: metpo:range_min "66.3" xsd:string + +[Term] +id: metpo:1000433 +name: obsolete cell width very low +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000434 +name: obsolete cell width low +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000435 +name: obsolete cell width mid +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000436 +name: obsolete cell width high +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000437 +name: obsolete cell length very low +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000438 +name: obsolete cell length low +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000439 +name: obsolete cell length mid +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000440 +name: obsolete cell length high +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000441 +name: temperature optimum very low +synonym: "Psychrophile" EXACT [] +synonym: "TO_<=10" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000304 ! temperature optimum +property_value: metpo:range_max "10" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000442 +name: temperature optimum low +synonym: "Psychrophile" EXACT [] +synonym: "Psychrotolerant" EXACT [] +synonym: "TO_10_to_22" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000304 ! temperature optimum +property_value: metpo:range_max "22" xsd:string +property_value: metpo:range_min "10" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000443 +name: temperature optimum mid1 +synonym: "mesophilic" EXACT [] +synonym: "TO_22_to_27" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000304 ! temperature optimum +property_value: metpo:range_max "27" xsd:string +property_value: metpo:range_min "22" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000444 +name: temperature optimum mid2 +synonym: "mesophilic" EXACT [] +synonym: "TO_27_to_30" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000304 ! temperature optimum +property_value: metpo:range_max "30" xsd:string +property_value: metpo:range_min "27" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000445 +name: temperature optimum mid3 +synonym: "mesophilic" EXACT [] +synonym: "TO_30_to_34" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000304 ! temperature optimum +property_value: metpo:range_max "34" xsd:string +property_value: metpo:range_min "30" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000446 +name: temperature optimum mid4 +synonym: "mesophilic" EXACT [] +synonym: "TO_34_to_40" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000304 ! temperature optimum +property_value: metpo:range_max "40" xsd:string +property_value: metpo:range_min "34" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000447 +name: temperature optimum high +synonym: "Thermophile" EXACT [] +synonym: "TO_>40" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000304 ! temperature optimum +property_value: metpo:range_min "40" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000448 +name: temperature range very low +synonym: "Psychrophile" EXACT [] +synonym: "TR_<=10" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000306 ! temperature range +property_value: metpo:range_max "10" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000449 +name: temperature range low +synonym: "Psychrophile" EXACT [] +synonym: "Psychrotolerant" EXACT [] +synonym: "TR_10_to_22" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000306 ! temperature range +property_value: metpo:range_max "22" xsd:string +property_value: metpo:range_min "10" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000450 +name: temperature range mid1 +synonym: "mesophilic" EXACT [] +synonym: "TR_22_to_27" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000306 ! temperature range +property_value: metpo:range_max "27" xsd:string +property_value: metpo:range_min "22" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000451 +name: temperature range mid2 +synonym: "mesophilic" EXACT [] +synonym: "TR_27_to_30" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000306 ! temperature range +property_value: metpo:range_max "30" xsd:string +property_value: metpo:range_min "27" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000452 +name: temperature range mid3 +synonym: "mesophilic" EXACT [] +synonym: "TR_30_to_34" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000306 ! temperature range +property_value: metpo:range_max "34" xsd:string +property_value: metpo:range_min "30" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000453 +name: temperature range mid4 +synonym: "mesophilic" EXACT [] +synonym: "TR_34_to_40" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000306 ! temperature range +property_value: metpo:range_max "40" xsd:string +property_value: metpo:range_min "34" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000454 +name: temperature range high +synonym: "Thermophile" EXACT [] +synonym: "TR_>40" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000306 ! temperature range +property_value: metpo:range_min "40" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000455 +name: pH optimum low +synonym: "Acid Tolerant" EXACT [] +synonym: "Acidophile" EXACT [] +synonym: "Extreme Acidophile" EXACT [] +synonym: "Facultative acidophile" EXACT [] +synonym: "Obligative acidophile" EXACT [] +synonym: "pHO_0_to_6" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000331 ! pH optimum +property_value: metpo:range_max "6" xsd:string +property_value: metpo:range_min "0" xsd:string + +[Term] +id: metpo:1000456 +name: pH optimum mid1 +synonym: "Alkali Tolerant" EXACT [] +synonym: "Neutrophile" EXACT [] +synonym: "pHO_6_to_7" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000331 ! pH optimum +property_value: metpo:range_max "7" xsd:string +property_value: metpo:range_min "6" xsd:string + +[Term] +id: metpo:1000457 +name: pH optimum mid2 +synonym: "Alkali Tolerant" EXACT [] +synonym: "Alkaliphile" EXACT [] +synonym: "Neutrophile" EXACT [] +synonym: "pHO_7_to_8" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000331 ! pH optimum +property_value: metpo:range_max "8" xsd:string +property_value: metpo:range_min "7" xsd:string + +[Term] +id: metpo:1000458 +name: pH optimum high +synonym: "Alkali Tolerant" EXACT [] +synonym: "Alkaliphile" EXACT [] +synonym: "Extreme Alkaliphile" EXACT [] +synonym: "pHO_8_to_14" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000331 ! pH optimum +property_value: metpo:range_max "14" xsd:string +property_value: metpo:range_min "8" xsd:string + +[Term] +id: metpo:1000459 +name: pH range very low +synonym: "Acid Tolerant" EXACT [] +synonym: "Acidophile" EXACT [] +synonym: "Extreme Acidophile" EXACT [] +synonym: "Facultative acidophile" EXACT [] +synonym: "Obligative acidophile" EXACT [] +synonym: "pHR_0_to_4" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000332 ! pH range +property_value: metpo:range_max "4" xsd:string +property_value: metpo:range_min "0" xsd:string + +[Term] +id: metpo:1000460 +name: pH range low +synonym: "Acid Tolerant" EXACT [] +synonym: "Acidophile" EXACT [] +synonym: "Facultative acidophile" EXACT [] +synonym: "Obligative acidophile" EXACT [] +synonym: "pHR_4_to_6" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000332 ! pH range +property_value: metpo:range_max "6" xsd:string +property_value: metpo:range_min "4" xsd:string + +[Term] +id: metpo:1000461 +name: pH range mid1 +synonym: "Alkali Tolerant" EXACT [] +synonym: "Facultative acidophile" EXACT [] +synonym: "Neutrophile" EXACT [] +synonym: "pHR_6_to_7" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000332 ! pH range +property_value: metpo:range_max "7" xsd:string +property_value: metpo:range_min "6" xsd:string + +[Term] +id: metpo:1000462 +name: pH range mid2 +synonym: "Alkali Tolerant" EXACT [] +synonym: "Alkaliphile" EXACT [] +synonym: "Facultative acidophile" EXACT [] +synonym: "Neutrophile" EXACT [] +synonym: "pHR_7_to_8" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000332 ! pH range +property_value: metpo:range_max "8" xsd:string +property_value: metpo:range_min "7" xsd:string + +[Term] +id: metpo:1000463 +name: pH range mid3 +synonym: "Alkali Tolerant" EXACT [] +synonym: "Alkaliphile" EXACT [] +synonym: "Extreme Alkaliphile" EXACT [] +synonym: "Facultative acidophile" EXACT [] +synonym: "pHR_8_to_10" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000332 ! pH range +property_value: metpo:range_max "10" xsd:string +property_value: metpo:range_min "8" xsd:string + +[Term] +id: metpo:1000464 +name: pH range high +synonym: "10_to_14" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +synonym: "Alkali Tolerant" EXACT [] +synonym: "Alkaliphile" EXACT [] +synonym: "Extreme Alkaliphile" EXACT [] +is_a: metpo:1000332 ! pH range +property_value: metpo:range_max "14" xsd:string +property_value: metpo:range_min "10" xsd:string + +[Term] +id: metpo:1000465 +name: NaCl optimum low +synonym: "Halotolerant" EXACT [] +synonym: "NaO_<=1" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +synonym: "Non-halophile" EXACT [] +is_a: metpo:1000333 ! NaCl optimum +property_value: metpo:range_max "1" xsd:string +property_value: qudt:ucumCode "%" xsd:string + +[Term] +id: metpo:1000466 +name: NaCl optimum mid1 +synonym: "Halotolerant" EXACT [] +synonym: "NaO_1_to_3" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +synonym: "Slight halophile" EXACT [] +is_a: metpo:1000333 ! NaCl optimum +property_value: metpo:range_max "3" xsd:string +property_value: metpo:range_min "1" xsd:string +property_value: qudt:ucumCode "%" xsd:string + +[Term] +id: metpo:1000467 +name: NaCl optimum mid2 +synonym: "Halotolerant" EXACT [] +synonym: "Moderate halophile" EXACT [] +synonym: "NaO_3_to_8" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000333 ! NaCl optimum +property_value: metpo:range_max "8" xsd:string +property_value: metpo:range_min "3" xsd:string +property_value: qudt:ucumCode "%" xsd:string + +[Term] +id: metpo:1000468 +name: NaCl optimum high +synonym: "Extreme halophile" EXACT [] +synonym: "NaO_>8" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000333 ! NaCl optimum +property_value: metpo:range_min "8" xsd:string +property_value: qudt:ucumCode "%" xsd:string + +[Term] +id: metpo:1000469 +name: NaCl range low +synonym: "Halotolerant" EXACT [] +synonym: "NaR_<=1" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +synonym: "Non-halophile" EXACT [] +is_a: metpo:1000334 ! NaCl range +property_value: metpo:range_max "1" xsd:string +property_value: qudt:ucumCode "%" xsd:string + +[Term] +id: metpo:1000470 +name: NaCl range mid1 +synonym: "Halotolerant" EXACT [] +synonym: "NaR_1_to_3" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +synonym: "Slight halophile" EXACT [] +is_a: metpo:1000334 ! NaCl range +property_value: metpo:range_max "3" xsd:string +property_value: metpo:range_min "1" xsd:string +property_value: qudt:ucumCode "%" xsd:string + +[Term] +id: metpo:1000471 +name: NaCl range mid2 +synonym: "Halotolerant" EXACT [] +synonym: "Moderate halophile" EXACT [] +synonym: "NaR_3_to_8" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000334 ! NaCl range +property_value: metpo:range_max "8" xsd:string +property_value: metpo:range_min "3" xsd:string +property_value: qudt:ucumCode "%" xsd:string + +[Term] +id: metpo:1000472 +name: NaCl range high +synonym: "Extreme halophile" EXACT [] +synonym: "NaR_>8" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000334 ! NaCl range +property_value: metpo:range_min "8" xsd:string +property_value: qudt:ucumCode "%" xsd:string + +[Term] +id: metpo:1000473 +name: pH delta very low +synonym: "pHd_<=1" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000232 ! pH delta +property_value: metpo:range_max "1" xsd:string + +[Term] +id: metpo:1000474 +name: pH delta low +synonym: "pHd_1_2" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000232 ! pH delta +property_value: metpo:range_max "2" xsd:string +property_value: metpo:range_min "1" xsd:string + +[Term] +id: metpo:1000475 +name: pH delta mid1 +synonym: "pHd_2_3" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000232 ! pH delta +property_value: metpo:range_max "3" xsd:string +property_value: metpo:range_min "2" xsd:string + +[Term] +id: metpo:1000476 +name: pH delta mid2 +synonym: "pHd_3_4" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000232 ! pH delta +property_value: metpo:range_max "4" xsd:string +property_value: metpo:range_min "3" xsd:string + +[Term] +id: metpo:1000477 +name: pH delta mid3 +synonym: "pHd_4_5" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000232 ! pH delta +property_value: metpo:range_max "5" xsd:string +property_value: metpo:range_min "4" xsd:string + +[Term] +id: metpo:1000478 +name: pH delta high +synonym: "pHd_5_9" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000232 ! pH delta +property_value: metpo:range_max "9" xsd:string +property_value: metpo:range_min "5" xsd:string + +[Term] +id: metpo:1000479 +name: NaCl delta low +synonym: "Nad_<=1" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000335 ! NaCl delta +property_value: metpo:range_max "1" xsd:string +property_value: qudt:ucumCode "%" xsd:string + +[Term] +id: metpo:1000480 +name: NaCl delta mid1 +synonym: "Nad_1_3" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000335 ! NaCl delta +property_value: metpo:range_max "3" xsd:string +property_value: metpo:range_min "1" xsd:string +property_value: qudt:ucumCode "%" xsd:string + +[Term] +id: metpo:1000481 +name: NaCl delta mid2 +synonym: "Nad_3_8" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000335 ! NaCl delta +property_value: metpo:range_max "8" xsd:string +property_value: metpo:range_min "3" xsd:string +property_value: qudt:ucumCode "%" xsd:string + +[Term] +id: metpo:1000482 +name: NaCl delta high +synonym: "Nad_>8" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000335 ! NaCl delta +property_value: metpo:range_max "8" xsd:string +property_value: qudt:ucumCode "%" xsd:string + +[Term] +id: metpo:1000483 +name: temperature delta very low +synonym: "Td_1_5" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000303 ! temperature delta +property_value: metpo:range_max "5" xsd:string +property_value: metpo:range_min "1" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000484 +name: temperature delta low +synonym: "Td_5_10" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000303 ! temperature delta +property_value: metpo:range_max "10" xsd:string +property_value: metpo:range_min "5" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000485 +name: temperature delta mid1 +synonym: "Td_10_20" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000303 ! temperature delta +property_value: metpo:range_max "20" xsd:string +property_value: metpo:range_min "10" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000486 +name: temperature delta mid2 +synonym: "Td_20_30" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000303 ! temperature delta +property_value: metpo:range_max "30" xsd:string +property_value: metpo:range_min "20" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000487 +name: temperature delta high +synonym: "Td_>30" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000303 ! temperature delta +property_value: metpo:range_min "30" xsd:string +property_value: qudt:ucumCode "Cel" xsd:string + +[Term] +id: metpo:1000488 +name: obsolete branched +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000489 +name: obsolete coccobacillus +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000490 +name: obsolete crescent +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000491 +name: obsolete curved +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000492 +name: obsolete curved spiral +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000493 +name: obsolete diplococcus +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000494 +name: obsolete ellipsoidal +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000495 +name: obsolete filament +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000496 +name: obsolete fusiform +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000497 +name: obsolete helical +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000498 +name: obsolete irregular +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000499 +name: obsolete oval +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000500 +name: obsolete ovoid +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000501 +name: obsolete pleomorphic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000502 +name: obsolete ring +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000503 +name: obsolete rod +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000504 +name: obsolete sphere +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000505 +name: obsolete spindle +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000506 +name: obsolete spiral +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000507 +name: obsolete star - dumbbell - pleomorphic +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000508 +name: obsolete tailed +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000509 +name: obsolete temperature adaptation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000510 +name: obsolete salinity adaptation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000511 +name: obsolete pH adaptation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000512 +name: obsolete bacterial spore +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000513 +name: obsolete pressure adaptation type +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000514 +name: obsolete pressure tolerance range +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000515 +name: obsolete sensitivity to oxygen +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000516 +name: obsolete sensitivity toward +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000517 +name: obsolete size +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000518 +name: obsolete 1-D extent +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000519 +name: obsolete width +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000520 +name: obsolete length +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000521 +name: obsolete sensitivity toward pressure +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000522 +name: obsolete sensitivity toward nacl +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000523 +name: obsolete sensitivity toward ph +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000524 +name: obsolete sensitivity toward temperature +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000525 +name: microbe +def: "A material entity that is too small to be viewed by the unaided eye, typically requiring microscopy for observation." [] {IAO:0000119="OHMI:0000460"} +comment: METPO is primarily concerned with unicellular, prokaryotic life forms, i.e. bacteria and archaea, including the cases of giant bacteria like Thiomargarita +is_a: metpo:1000186 ! material entity +property_value: IAO:0000117 "Luke Wang" xsd:string +property_value: skos:closeMatch https://biolink.github.io/biolink-model/OrganismTaxon + +[Term] +id: metpo:1000526 +name: chemical entity +def: "A material entity that is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances." [] {IAO:0000119="CHEBI:24431"} +is_a: metpo:1000186 ! material entity +property_value: skos:closeMatch https://biolink.github.io/biolink-model/ChemicalEntity + +[Term] +id: metpo:1000527 +name: enzyme +is_a: metpo:1000186 ! material entity + +[Term] +id: metpo:1000528 +name: obsolete structured susceptibility detail +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000529 +name: obsolete facultative psychrophile +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000531 +name: pH phenotype with numerical limits +def: "A phenotype characterized by specific pH values or ranges that define growth or activity limits." [] +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1000532 +name: salinity phenotype with numerical limits +def: "A phenotype characterized by specific salt concentration values or ranges that define growth or activity limits." [] +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1000533 +name: temperature phenotype with numerical limits +def: "A phenotype characterized by specific temperature values or ranges that define growth or activity limits." [] +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1000534 +name: delta phenotype with numerical limits +def: "A phenotype characterized by the difference between maximum and minimum values of a growth parameter." [] +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1000535 +name: growth range phenotype with numerical limits +def: "A phenotype characterized by the span of values within which an organism can maintain growth." [] +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1000536 +name: optimum phenotype with numerical limits +def: "A phenotype characterized by the value at which an organism exhibits maximum growth rate or activity." [] +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1000601 +name: oxygen preference +def: "A phenotype that is relating to an organism's oxygen requirements or tolerance for growth." [] {IAO:0000119="UPHENO:0049673", IAO:0000119="https://purl.dsmz.de/schema/OxygenTolerance"} +synonym: "metabolism" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "oxygen preference" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +synonym: "Physiology and metabolism.oxygen tolerance.oxygen tolerance" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1000602 +name: aerobic +def: "An oxygen preference in which growth occurs in the presence of molecular oxygen (O₂), typically using O₂ as the terminal electron acceptor." [] {IAO:0000119="ECOCORE:00000173", IAO:0000119="OMP:0005253"} +synonym: "aerobe" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "aerobic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "Ox_aerobic" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000601 ! oxygen preference + +[Term] +id: metpo:1000603 +name: anaerobic +def: "An oxygen preference in which growth occurs in the absence of molecular oxygen (O₂)." [] {IAO:0000119="MICRO:0000495"} +synonym: "anaerobe" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "anaerobic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "Ox_anaerobic" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000601 ! oxygen preference + +[Term] +id: metpo:1000604 +name: microaerophilic +def: "An oxygen preference that requires molecular oxygen (O₂) at concentrations lower than atmospheric." [] {IAO:0000119="ECOCORE:00000180", IAO:0000119="OMP:0005254", IAO:0000119="MICRO:0000515"} +synonym: "microaerophile" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "microaerophilic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "Ox_microerophile" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000601 ! oxygen preference + +[Term] +id: metpo:1000605 +name: facultatively anaerobic +def: "An oxygen preference in which growth can occur with or without molecular oxygen (O₂)." [] {IAO:0000119="OMP:0000087", IAO:0000119="MICRO:0001520"} +synonym: "facultative" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "facultative anaerobe" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "facultative anaerobe" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000601 ! oxygen preference + +[Term] +id: metpo:1000606 +name: obligately aerobic +def: "An oxygen preference that requires molecular oxygen (O₂) for growth." [] {IAO:0000119="MICRO:0000516"} +synonym: "obligate aerobe" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "obligate aerobic" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +synonym: "obligate aerobic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000601 ! oxygen preference + +[Term] +id: metpo:1000607 +name: obligately anaerobic +def: "An oxygen preference in which molecular oxygen (O₂) inhibits or prevents growth." [] {IAO:0000119="MICRO:0000504"} +synonym: "obligate anaerobe" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "obligate anaerobic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000601 ! oxygen preference + +[Term] +id: metpo:1000608 +name: facultatively aerobic +def: "An oxygen preference in which growth can occur without oxygen but is capable of aerobic growth." [] {IAO:0000119="OMP:0000087", IAO:0000119="ECOCORE:00000177"} +synonym: "facultative" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "facultative aerobe" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000601 ! oxygen preference + +[Term] +id: metpo:1000609 +name: aerotolerant +def: "An oxygen preference that does not use O₂ for growth but tolerates its presence." [] {IAO:0000119="MICRO:0000502"} +synonym: "aerotolerant" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "aerotolerant" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000601 ! oxygen preference + +[Term] +id: metpo:1000610 +name: microaerotolerant +def: "An oxygen preference that tolerates low levels of molecular oxygen (O₂) without requiring it." [] {IAO:0000119="ECOCORE:00000180", IAO:0000119="ECOCORE:00000181", IAO:0000119="OMP:0000087", IAO:0000119="OMP:0000105"} +synonym: "microaerotolerant" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000601 ! oxygen preference + +[Term] +id: metpo:1000611 +name: strictly anaerobic +def: "An obligately anaerobic where a microorganism does not grow in the presence of oxygen gas (O2)." [] {IAO:0000119="OMP:0000184"} +synonym: "obligate anaerobic" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +synonym: "strictly anaerobic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000607 ! obligately anaerobic + +[Term] +id: metpo:1000612 +name: facultative oxygen preference +def: "An oxygen preference that describes a microorganism that can grow with or without molecular oxygen." [] {IAO:0000119="OMP:0000087"} +synonym: "Ox_facultative_aerobe_anaerobe" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000601 ! oxygen preference + +[Term] +id: metpo:1000613 +name: temperature preference +def: "A phenotype that describes characteristic growth with respect to environmental temperature." [] {IAO:0000119="OMP:0005002"} +synonym: "Physiology and metabolism.culture temp.temperature" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "range_tmp" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "temperature preference" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1000614 +name: psychrophilic +def: "A temperature preference in which growth is favored at low temperatures, typically near or below ~15 °C." [] {IAO:0000119="MICRO:0001306"} +synonym: "psychrophilic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "psychrophilic" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "psychrophilic" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000613 ! temperature preference + +[Term] +id: metpo:1000615 +name: mesophilic +def: "A temperature preference in which growth is favored at intermediate temperatures, typically ~20–45 °C." [] {IAO:0000119="MICRO:0000111"} +synonym: "mesophilic" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "mesophilic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000613 ! temperature preference + +[Term] +id: metpo:1000616 +name: thermophilic +def: "A temperature preference in which growth is favored at elevated temperatures, typically ≥45 °C." [] {IAO:0000119="OMP:0005003", IAO:0000119="OMP:0005004", IAO:0000119="MICRO:0000118"} +synonym: "thermophilic" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +synonym: "thermophilic" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "thermophilic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000613 ! temperature preference + +[Term] +id: metpo:1000617 +name: hyperthermophilic +def: "A temperature preference in which growth is favored at very high temperatures, typically ≥80 °C." [] {IAO:0000119="MICRO:0001538"} +synonym: "extreme thermophilic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "hyperthermophilic" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000613 ! temperature preference + +[Term] +id: metpo:1000618 +name: psychrotolerant +def: "A temperature preference in which growth can occur at low temperatures without an obligate low-temperature preference." [] {IAO:0000119="MICRO:0001310", IAO:0000119="OMP:0005007", IAO:0000119="OMP:0005006"} +synonym: "psychrotolerant" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000613 ! temperature preference + +[Term] +id: metpo:1000619 +name: thermotolerant +def: "A temperature preference in which growth can occur at elevated temperatures without an obligate high-temperature preference." [] {IAO:0000119="MICRO:0001286"} +synonym: "thermotolerant" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000613 ! temperature preference + +[Term] +id: metpo:1000620 +name: halophilic +def: "A halophily preference in which an organism requires high concentrations of salt for growth and survival." [] {IAO:0000119="GO:0170002", IAO:0000119="OMP:0005016", IAO:0000119="MICRO:0001315", IAO:0000119="MICRO:0001314"} +synonym: "halophilic" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "halophilic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000629 ! halophily preference + +[Term] +id: metpo:1000621 +name: haloalkaliphilic +def: "A halophily preference in which an organism requires both high salt concentrations and alkaline pH for optimal growth." [] {IAO:0000119="MICRO:0001392", IAO:0000119="MICRO:0001554", IAO:0000119="OMP:0005011", IAO:0000119="MICRO:0001314"} +synonym: "haloalkaliphilic" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000629 ! halophily preference + +[Term] +id: metpo:1000622 +name: halotolerant +def: "A halophily preference in which an organism can tolerate high salt concentrations but does not require them for growth." [] {IAO:0000119="MICRO:0001316"} +synonym: "halotolerant" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "halotolerant" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000629 ! halophily preference + +[Term] +id: metpo:1000623 +name: moderately halophilic +def: "A halophily preference where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M." [] {IAO:0000119="OMP:0005016"} +synonym: "moderate-halophilic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "moderately halophilic" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000629 ! halophily preference +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000624 +name: non halophilic +def: "A halophily preference in which an organism does not require or prefer elevated salt concentrations for growth." [] +synonym: "non-halophilic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "non-halophilic" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000629 ! halophily preference + +[Term] +id: metpo:1000625 +name: slightly halophilic +def: "A halophily preference in which an organism requires low to moderate salt concentrations (0.3 to 0.8 M NaCl) for optimal growth." [] {IAO:0000119="OMP:0005016"} +synonym: "slightly halophilic" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000629 ! halophily preference + +[Term] +id: metpo:1000626 +name: stenohaline +def: "A halophily preference in which an organism can only tolerate a narrow range of salinity concentrations and cannot survive significant changes in environmental salt levels." [] {IAO:0000119="https://purl.dsmz.de/schema/SaltTolerance"} +synonym: "stenohaline" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000629 ! halophily preference +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000627 +name: euryhaline +def: "A halophily preference in which an organism can tolerate a wide range of salinity conditions." [] +synonym: "euryhaline" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000629 ! halophily preference + +[Term] +id: metpo:1000628 +name: extremely halophilic +def: "A halophily preference in which an organism requires very high salt concentrations (typically 15-30% NaCl or higher) for optimal growth and cannot grow at salt concentrations below approximately 12%." [] {IAO:0000119="OMP:0005016", IAO:0000119="MICRO:0001314"} +synonym: "extreme-halophilic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "extremely halophilic" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000629 ! halophily preference +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000629 +name: halophily preference +def: "A phenotype that is relating to an organism's salt concentration requirements or tolerance for growth." [] {IAO:0000119="https://purl.dsmz.de/schema/SaltTolerance", IAO:0000119="OMP:0005016"} +synonym: "Physiology and metabolism.halophily.halophily level" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "range_salinity" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "salinity preference" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1000630 +name: biological process +def: "A execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." [] + +[Term] +id: metpo:1000631 +name: trophic type +def: "A phenotype that is describing how an organism obtains carbon and energy for growth and metabolism." [] +synonym: "nutritional type" RELATED [] +synonym: "pathways" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "Physiology and metabolism.nutrition type.type" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000632 +name: autotrophic +def: "A trophic type in which an organism produces organic compounds from inorganic carbon sources (primarily carbon dioxide or bicarbonate) using energy from light (photoautotrophy) or from the oxidation of inorganic compounds (chemoautotrophy)." [] {IAO:0000119="ECOCORE:00000009", IAO:0000119="MICRO:0001456"} +synonym: "autotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "autotrophy" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "TT_autotroph" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000633 +name: carboxydotrophic +def: "A trophic type in which an organism derives energy from the oxidation of carbon monoxide." [] +is_a: metpo:1000631 ! trophic type + +[Term] +id: metpo:1000634 +name: chemoautolithotrophic +def: "A trophic type in which an organism uses chemical oxidation of inorganic compounds as the energy source and carbon dioxide as the primary carbon source for biosynthesis." [] {IAO:0000119="ECOCORE:00000129", IAO:0000119="ECOCORE:00000124", IAO:0000119="ECOCORE:00000123", IAO:0000119="OMP:0007111", IAO:0000119="OMP:0007110"} +synonym: "chemoautolithotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000635 +name: chemoautotrophic +def: "A trophic type in which an organism obtains energy from oxidation of inorganic compounds and carbon from carbon dioxide." [] {IAO:0000119="ECOCORE:00000129", IAO:0000119="MICRO:0001480", IAO:0000119="ECOCORE:00000123", IAO:0000119="OMP:0007111", IAO:0000119="OMP:0007110"} +synonym: "chemoautotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type + +[Term] +id: metpo:1000636 +name: chemoheterotrophic +def: "A trophic type in which an organism obtains both energy and carbon from organic compounds." [] {IAO:0000119="ECOCORE:00000012", IAO:0000119="ECOCORE:00000132", IAO:0000119="OMP:0007111", IAO:0000119="OMP:0007110", IAO:0000119="ECOCORE:00000127"} +synonym: "aerobic_chemo_heterotrophy" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "chemoheterotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type + +[Term] +id: metpo:1000637 +name: chemolithoautotrophic +def: "A trophic type in which an organism obtains energy from oxidation of inorganic compounds (lithotrophy) and carbon from carbon dioxide." [] {IAO:0000119="MICRO:0000511"} +synonym: "chemolithoautotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type + +[Term] +id: metpo:1000638 +name: chemolithoheterotrophic +def: "A trophic type characterized by the use of inorganic chemical compounds as electron donors for energy generation while utilizing organic compounds as the primary carbon source." [] {IAO:0000119="MICRO:0001478", IAO:0000119="MICRO:0000512"} +synonym: "chemolithoheterotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000639 +name: chemolithotrophic +def: "A trophic type characterized by the use of inorganic chemical compounds as electron donors and carbon dioxide as the primary carbon source for energy generation and biosynthesis." [] {IAO:0000119="MICRO:0001499", IAO:0000119="OMP:0007110"} +synonym: "chemolithotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000640 +name: chemoorganoheterotrophic +def: "A trophic type in which an organism obtains both energy and carbon from organic compounds through oxidation." [] {IAO:0000119="MICRO:0001481", IAO:0000119="MICRO:0000514", IAO:0000119="OMP:0007111", IAO:0000119="ECOCORE:00000127", IAO:0000119="MICRO:0001479"} +synonym: "chemoorganoheterotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type + +[Term] +id: metpo:1000641 +name: chemotrophic +def: "A trophic type in which an organism obtains energy from chemical oxidation of either inorganic or organic compounds." [] {IAO:0000119="MICRO:0001458"} +synonym: "chemotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "TT_chemotroph" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000631 ! trophic type + +[Term] +id: metpo:1000642 +name: copiotrophic +def: "A nutrient adaptation in which an organism thrives in environments with high nutrient concentrations, typically exhibiting rapid growth rates and utilizing diverse carbon sources." [] +synonym: "copiotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000731 ! nutrient adaptation +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000643 +name: obsolete denitrifying +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000644 +name: heterotrophic +def: "A trophic type in which an organism obtains carbon from organic compounds rather than from carbon dioxide." [] {IAO:0000119="MICRO:0001474"} +synonym: "aerobic_heterotrophy" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "heterotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "heterotrophic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "TT_heterotroph" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000631 ! trophic type + +[Term] +id: metpo:1000645 +name: obsolete hydrogen-oxidizing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000646 +name: hydrogenotrophic +def: "A trophic type in which an organism uses molecular hydrogen as an electron donor for energy generation and carbon dioxide as the primary carbon source." [] +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000647 +name: lithoautotrophic +def: "A trophic type in which an organism obtains energy from inorganic electron donors and carbon from carbon dioxide." [] {IAO:0000119="ECOCORE:00000009", IAO:0000119="MICRO:0001483", IAO:0000119="ECOCORE:00000122", IAO:0000119="ECOCORE:00000014", IAO:0000119="MICRO:0001477"} +synonym: "lithoautotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type + +[Term] +id: metpo:1000648 +name: lithoheterotrophic +def: "A trophic type in which an organism obtains energy from the oxidation of inorganic compounds while using organic compounds as the primary carbon source for biosynthesis." [] {IAO:0000119="ECOCORE:00000162", IAO:0000119="MICRO:0001459", IAO:0000119="ECOCORE:00000014", IAO:0000119="MICRO:0001478", IAO:0000119="OMP:0007110"} +synonym: "lithoheterotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000649 +name: lithotrophic +def: "A trophic type in which an organism uses inorganic compounds as electron donors for energy generation." [] {IAO:0000119="MICRO:0001459"} +synonym: "lithotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "TT_lithotroph" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000650 +name: methanotrophic +def: "A trophic type in which an organism uses methane as the primary carbon and energy source through oxidation of methane to carbon dioxide." [] +synonym: "methanotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000651 +name: methylotrophic +def: "A trophic type in which an organism obtains energy and carbon from reduced one-carbon compounds." [] +synonym: "methylotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "methylotrophy" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "TT_methylotroph" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000631 ! trophic type + +[Term] +id: metpo:1000652 +name: mixotrophic +def: "A trophic type in which an organism can use both organic and inorganic carbon sources for growth." [] {IAO:0000119="MICRO:0001475"} +synonym: "mixotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type + +[Term] +id: metpo:1000653 +name: obsolete nitrogen-fixing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000654 +name: oligotrophic +def: "A nutrient adaptation characterized by the ability to thrive in environments with very low nutrient concentrations, typically possessing efficient nutrient uptake and utilization systems." [] {IAO:0000119="ENVO:01000774", IAO:0000119="ENVO:00002223"} +synonym: "oligotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "TT_oligotroph" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000731 ! nutrient adaptation +property_value: IAO:0000117 "Anthea Guo" xsd:string +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000655 +name: organotrophic +def: "A trophic type in which an organism obtains energy from the oxidation of organic compounds." [] {IAO:0000119="ECOCORE:00000162", IAO:0000119="OMP:0007111"} +synonym: "organotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "TT_organotroph" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000631 ! trophic type + +[Term] +id: metpo:1000656 +name: photoautotrophic +def: "A trophic type characterized by the use of light as the energy source and carbon dioxide as the primary carbon source for biosynthesis." [] {IAO:0000119="MICRO:0001483", IAO:0000119="OMP:0006008", IAO:0000119="ECOCORE:00000121", IAO:0000119="ECOCORE:00000017", IAO:0000119="MICRO:0001457"} +synonym: "anoxygenic_photoautotrophy" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "anoxygenic_photoautotrophy_hydrogen_oxidation" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "anoxygenic_photoautotrophy_iron_oxidation" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "anoxygenic_photoautotrophy_sulfur_oxidation" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "photoautotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "photoautotrophy" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000657 +name: photoheterotrophic +def: "A trophic type in which an organism uses light as the energy source and organic compounds as the primary carbon source for biosynthesis." [] {IAO:0000119="ECOCORE:00000131"} +synonym: "photoheterotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "photoheterotrophy" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000658 +name: photolithotrophic +def: "A trophic type in which an organism uses light as the energy source and inorganic compounds as electron donors, typically with carbon dioxide as the primary carbon source." [] {IAO:0000119="MICRO:0001482"} +synonym: "photolithotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000659 +name: photoorganoheterotrophic +def: "A trophic type in which an organism obtains energy from light and carbon from organic compounds." [] {IAO:0000119="MICRO:0000510"} +synonym: "photoorganoheterotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type + +[Term] +id: metpo:1000660 +name: phototrophic +def: "A trophic type characterized by the use of light as the primary energy source for metabolic processes, regardless of carbon source." [] {IAO:0000119="OMP:0007064", IAO:0000119="MICRO:0001457"} +synonym: "aerobic_anoxygenic_phototrophy" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "phototroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "TT_phototroph" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000661 +name: obsolete sulfate-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000662 +name: obsolete sulfur-oxidizing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000663 +name: chemoorganotrophic +def: "A trophic type in which an organism obtains energy through chemical oxidation of organic compounds that also serve as the carbon source for biosynthesis." [] {IAO:0000119="OMP:0007111"} +synonym: "chemoorganotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000664 +name: organoheterotrophic +def: "A trophic type characterized by the use of organic compounds as both electron donors and primary carbon sources for energy generation and biosynthesis." [] {IAO:0000119="ECOCORE:00000162", IAO:0000119="ECOCORE:00000121", IAO:0000119="ECOCORE:00000126", IAO:0000119="ECOCORE:00000125", IAO:0000119="ECOCORE:00000127"} +synonym: "organoheterotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000665 +name: photolithoautotrophic +def: "A trophic type in which an organism obtains energy from light and carbon from carbon dioxide using inorganic electron donors." [] {IAO:0000119="MICRO:0000500"} +synonym: "photolithoautotroph" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000631 ! trophic type + +[Term] +id: metpo:1000666 +name: cell shape +def: "A phenotype that describes the characteristic three-dimensional morphological form of a microbial cell, determined by cell wall structure, cytoskeletal elements, and environmental factors." [] {IAO:0000119="OMP:0000073"} +synonym: "cell shape" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +synonym: "cell_shape" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "Morphology.cell morphology.cell shape" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000667 +name: bacillus shaped +def: "A cell shape characterized by an elongated, rod cylindrical morphology with relatively parallel sides and rounded ends." [] {IAO:0000119="OMP:0000076"} +synonym: "bacillus" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000668 +name: coccus shaped +def: "A cell shape in which an organism has a spherical or nearly spherical morphology, with roughly equal dimensions in all directions." [] {IAO:0000119="OMP:0000075", IAO:0000119="OMP:0000123", IAO:0000119="MICRO:0000402"} +synonym: "coccus" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "coccus-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000669 +name: crescent shaped +synonym: "crescent-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000670 +name: curved shaped +synonym: "curved-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "S_curved_spiral" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000671 +name: diplococcus shaped +def: "A cell shape in which spherical cells remain attached in pairs following cell division, forming characteristic doublets." [] {IAO:0000119="OMP:0000117"} +synonym: "diplococcus-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000672 +name: dumbbell shaped +synonym: "dumbbell-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "S_star_dumbbell_pleomorphic" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000666 ! cell shape + +[Term] +id: metpo:1000673 +name: ellipsoidal +def: "A cell shape in which an organism has an oval or ellipse morphology, elongated along one axis with rounded ends, intermediate between spherical and rod-shaped." [] {IAO:0000119="PATO:0000947"} +synonym: "ellipsoidal" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000674 +name: filament shaped +synonym: "filament" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "filament-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "S_filament" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000675 +name: flask shaped +synonym: "flask" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "flask-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000666 ! cell shape + +[Term] +id: metpo:1000676 +name: helical shaped +synonym: "helical-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Anthea Guo" xsd:string +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000677 +name: ovoid shaped +def: "A cell shape in which an organism has an oval morphology, rounded at both ends with one end often slightly broader than the other." [] {IAO:0000119="PATO:0001891"} +synonym: "ovoid-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "S_ovoid" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000678 +name: oval shaped +def: "A cell shape characterized by an ellipsoidal morphology with rounded ends, resembling an elongated sphere." [] {IAO:0000119="OMP:0007100"} +synonym: "oval-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000679 +name: pleomorphic shaped +def: "A cell shape characterized by variable and irregular morphology, where individual cells within a population exhibit multiple distinct shapes." [] {IAO:0000119="OMP:0000132"} +synonym: "pleomorphic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "pleomorphic-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "S_star_dumbbell_pleomorphic" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Anthea Guo" xsd:string +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000680 +name: ring shaped +def: "A cell shape in which an organism forms circular or toroidal structures." [] {IAO:0000119="PATO:0002539"} +synonym: "ring" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "ring-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000666 ! cell shape + +[Term] +id: metpo:1000681 +name: rod shaped +def: "A cell shape in which an organism has an elongated, cylindrical morphology with relatively straight sides and rounded or flat ends." [] {IAO:0000119="OMP:0000076"} +synonym: "rod-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "S_rod" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000682 +name: spore shaped +synonym: "spore-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000683 +name: sphere shaped +synonym: "S_sphere" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +synonym: "sphere-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000684 +name: spiral shaped +synonym: "S_curved_spiral" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +synonym: "spiral" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "spiral-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000685 +name: star shaped +def: "A cell shape in which an organism has multiple radiating projections from a central body." [] {IAO:0000119="OMP:0000130", IAO:0000119="PATO:0002065"} +synonym: "S_star_dumbbell_pleomorphic" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +synonym: "star" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "star-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000666 ! cell shape + +[Term] +id: metpo:1000686 +name: vibrio shaped +def: "A cell shape in which an organism has a curved rod or comma morphology, characterized by a short curved cylindrical form with a single arc." [] {IAO:0000119="OMP:0000086", IAO:0000119="OMP:0000077"} +synonym: "vibrio" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "vibrio-shaped" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000687 +name: branched shaped +synonym: "branced" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000666 ! cell shape + +[Term] +id: metpo:1000688 +name: coccobacillus shaped +synonym: "coccobacillus" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000666 ! cell shape + +[Term] +id: metpo:1000689 +name: disc shaped +def: "A cell shape in which an organism is flat and circular." [] +synonym: "disc" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000666 ! cell shape + +[Term] +id: metpo:1000690 +name: fusiform shaped +def: "A cell shape that is wide in the middle and tapers at both ends." [] {IAO:0000119="PATO:0002400"} +synonym: "fusiform" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000666 ! cell shape + +[Term] +id: metpo:1000691 +name: irregular shaped +synonym: "irregular" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000666 ! cell shape + +[Term] +id: metpo:1000692 +name: spindle shaped +synonym: "spindle" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000693 +name: spirochete shaped +def: "A cell shape in which an organism has an elongated, tightly coiled helical morphology with periplasmic flagella (endoflagella) located between the cell wall and outer membrane." [] {IAO:0000119="OMP:0000086", IAO:0000119="OMP:0000124", IAO:0000119="OMP:0000125"} +synonym: "spirochete" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000666 ! cell shape +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000694 +name: square shaped +synonym: "square" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000666 ! cell shape + +[Term] +id: metpo:1000695 +name: tailed shaped +synonym: "tailed" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000666 ! cell shape + +[Term] +id: metpo:1000696 +name: triangular shaped +synonym: "triangular" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000666 ! cell shape + +[Term] +id: metpo:1000697 +name: gram stain +def: "A phenotype where microorganisms are grouped based on their ability to retain crystal violet dye in the Gram staining procedure." [] {IAO:0000119="OMP:0000191"} +synonym: "gram_stain" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "Morphology.cell morphology.gram stain" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000698 +name: gram positive +def: "A gram stain in which an organism retains crystal violet dye and appears purple under microscopy due to a thick peptidoglycan cell wall." [] {IAO:0000119="OMP:0000188", IAO:0000119="https://purl.dsmz.de/schema/GramPositiveBacteria"} +synonym: "G_positive" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +synonym: "gram positive" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +synonym: "positive" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "positive" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000697 ! gram stain + +[Term] +id: metpo:1000699 +name: gram negative +def: "A gram stain in which bacteria do not retain crystal violet dye and appear pink or red after staining, indicating a thin peptidoglycan layer and presence of an outer membrane." [] +synonym: "G_negative" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +synonym: "gram negative" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +synonym: "negative" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "negative" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000697 ! gram stain +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000700 +name: gram variable +def: "A gram stain in which bacteria from the same culture show both gram-positive and gram-negative staining characteristics, often due to age of culture or cell wall degradation." [] {IAO:0000119="OMP:0000190"} +synonym: "variable" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000697 ! gram stain +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000701 +name: motility +def: "A phenotype in which an organism has the capability to move independently through its environment, typically by means of flagella, pili, gliding mechanisms, or other locomotory structures." [] {IAO:0000119="OMP:0000001"} +synonym: "Morphology.cell morphology.motility" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "motility" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "presence of motility" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000702 +name: motile +def: "A motility in which an organism has the ability to move independently using metabolic energy." [] {IAO:0000119="CL:0000219", IAO:0000119="OMP:0000005"} +synonym: "motile" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +synonym: "yes" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "yes" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000701 ! motility + +[Term] +id: metpo:1000703 +name: non motile +def: "A motility in which an organism lacks the ability to move independently under its own power." [] {IAO:0000119="OMP:0007489", IAO:0000119="OMP:0007488", IAO:0000119="OMP:0000133", IAO:0000119="UPHENO:0034076", IAO:0000119="OMP:0007490"} +synonym: "no" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "no" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "non-motile" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000701 ! motility + +[Term] +id: metpo:1000704 +name: flagellated +def: "A motile in which an organism possesses flagella for locomotion." [] {IAO:0000119="MICRO:0000272", IAO:0000119="CL:0011016", IAO:0000119="OMP:0000029", IAO:0000119="GO:0030317"} +synonym: "flagella" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000702 ! motile + +[Term] +id: metpo:1000705 +name: axially filamented +def: "A motile in which the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope." [] {IAO:0000119="OMP:0000023", IAO:0000119="GO:0055040"} +synonym: "axial filament" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000702 ! motile +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000706 +name: gliding +def: "A motile in which an organism moves smoothly along solid surfaces without flagella or pili." [] {IAO:0000119="OMP:0000112", IAO:0000119="GO:0071976", IAO:0000119="MICRO:0000437"} +synonym: "gliding" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000702 ! motile + +[Term] +id: metpo:1000720 +name: facultative psychrophilic +def: "A temperature preference characterized by the ability to grow at low temperatures (typically below 20°C) while maintaining optimal growth at moderate temperatures." [] {IAO:0000119="OMP:0005007", IAO:0000119="MICRO:0001306", IAO:0000119="MICRO:0001417"} +synonym: "facultative psychrophile" RELATED [] +synonym: "facultative psychrophilic" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000613 ! temperature preference +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000721 +name: extreme hyperthermophilic +def: "A temperature preference that grows optimally at temperatures above 90°C." [] {IAO:0000119="ENVO:00002027", IAO:0000119="OMP:0005003", IAO:0000119="MICRO:0001294", IAO:0000119="MICRO:0001538"} +synonym: "extreme hyperthermophile" RELATED [] +synonym: "extremely hyperthermophilic" RELATED [] +is_a: metpo:1000613 ! temperature preference + +[Term] +id: metpo:1000731 +name: nutrient adaptation +def: "A trophic type that involves an organism's physiological and metabolic adaptations to specific nutrient availability." [] {IAO:0000119="PHIPO:0001216"} +is_a: metpo:1000631 ! trophic type +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000800 +name: respiration +def: "A metabolism that is characterized by the method of performing cellular respiration, distinguished primarily by the specific terminal electron acceptor utilized for producing cellular energy." [] {IAO:0000119="GO:0045333", IAO:0000119="GO:0009060"} +synonym: "pathways" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "respiration" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000060 ! metabolism +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000801 +name: Aerobic respiration +def: "A respiration in which molecular oxygen serves as the terminal electron acceptor in the electron transport chain, generating ATP through oxidative phosphorylation with water as the final product." [] {IAO:0000119="GO:0009060"} +synonym: "Oxic respiration" RELATED [] +synonym: "Oxygen respiration" RELATED [] +is_a: metpo:1000800 ! respiration +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000802 +name: Anaerobic respiration +def: "A respiration in which an organism uses electron acceptors other than oxygen for energy production." [] {IAO:0000119="GO:0009061"} +synonym: "Anoxic respiration" RELATED [] +synonym: "Dissimilatory respiration (non-O₂)" RELATED [] +is_a: metpo:1000800 ! respiration + +[Term] +id: metpo:1000803 +name: Oxidative phosphorylation +def: "A metabolism that generates ATP through the transfer of electrons from electron donors to electron acceptors via redox reactions, coupled to the pumping of protons across a membrane to create an electrochemical gradient." [] {IAO:0000119="GO:0006119"} +is_a: metpo:1000060 ! metabolism +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1000804 +name: Substrate-level phosphorylation +def: "A metabolism in which ATP is formed directly by transfer of a phosphoryl group from a substrate to ADP." [] +is_a: metpo:1000060 ! metabolism + +[Term] +id: metpo:1000805 +name: Electron transfer +def: "A metabolism in which electrons are transferred from an electron donor to an electron acceptor." [] {IAO:0000119="GO:0009055"} +is_a: metpo:1000060 ! metabolism +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000806 +name: Disproportionation +def: "A metabolism in which a single substrate simultaneously undergoes both oxidation and reduction reactions, with part of the substrate serving as the electron donor and another part serving as the electron acceptor." [] +is_a: metpo:1000060 ! metabolism +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000807 +name: obsolete Nitrogen compound respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000808 +name: obsolete Nitrate reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000809 +name: obsolete Denitrification +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000810 +name: obsolete Dissimilatory nitrate reduction to ammonium +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000811 +name: obsolete Nitrite reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000812 +name: obsolete Anaerobic ammonium oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000813 +name: obsolete Nitric oxide reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000814 +name: obsolete Nitrous oxide reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000815 +name: obsolete Sulfur and sulfoxide compound respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000816 +name: obsolete Sulfate reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000817 +name: obsolete Sulfur reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000818 +name: obsolete Sulfite reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000819 +name: obsolete Thiosulfate reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000820 +name: obsolete Sulfoxide respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000821 +name: obsolete Dimethyl sulfoxide respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000822 +name: obsolete Methionine sulfoxide respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000823 +name: obsolete Sulfide oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000824 +name: obsolete Thiosulfate oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000825 +name: obsolete Sulfite oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000826 +name: obsolete Tetrathionate reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000827 +name: obsolete Polysulfide reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000828 +name: obsolete Metal and metalloid respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000829 +name: obsolete Iron reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000830 +name: obsolete Iron oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000831 +name: obsolete Nitrate-dependent Fe(II) oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000832 +name: obsolete Manganese reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000833 +name: obsolete Manganese oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000834 +name: obsolete Uranium reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000835 +name: obsolete Vanadium reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000836 +name: obsolete Chromium reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000837 +name: obsolete Technetium reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000838 +name: obsolete Cobalt reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000839 +name: obsolete Arsenate reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000840 +name: obsolete Arsenite oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000841 +name: obsolete Selenate reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000842 +name: obsolete Selenite reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000843 +name: obsolete Carbon and organic compound respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000844 +name: Methanogenesis +def: "A metabolism in which methane is produced as the primary end product through the reduction of carbon-containing compounds, formate, methanol, or acetate, exclusively performed by methanogenic archaea under strictly anaerobic conditions." [] {IAO:0000119="GO:0015948"} +synonym: "Biological methanation" RELATED [] +synonym: "Biomethanation" RELATED [] +synonym: "Carbonate respiration" RELATED [] +synonym: "methanogenesis" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000060 ! metabolism +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1000845 +name: Acetogenesis +def: "A metabolism that produces acetate as the primary end product through the reduction of carbon dioxide or other carbon compounds using the Wood-Ljungdahl pathway, typically performed by acetogenic bacteria under anaerobic conditions." [] +synonym: "Acetate fermentation" RELATED [] +synonym: "acetogenesis" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000060 ! metabolism +property_value: IAO:0000117 "Anthea Guo" xsd:string +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1000846 +name: Homoacetogenesis +def: "A metabolism in which acetate is produced as the sole reduced end product from reduction of CO2 via the acetyl-CoA pathway." [] +synonym: "Reductive acetyl-CoA pathway" RELATED [] +synonym: "Wood-Ljungdahl pathway" RELATED [] +is_a: metpo:1000060 ! metabolism + +[Term] +id: metpo:1000847 +name: obsolete Fumarate respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000848 +name: obsolete Trimethylamine N-oxide respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000849 +name: obsolete Humus respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000850 +name: obsolete Halogenated compound respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000851 +name: obsolete Organohalide respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000852 +name: obsolete (Per)chlorate respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000853 +name: obsolete Perchlorate respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000854 +name: obsolete Chlorate respiration +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000855 +name: obsolete Bromate reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000856 +name: obsolete Iodate reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000857 +name: obsolete Nitrite-dependent methane oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000858 +name: obsolete Nitrate-dependent methane oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000859 +name: obsolete Hydrogen oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000860 +name: obsolete Sulfur oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000861 +name: obsolete Nitrification +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000862 +name: obsolete Complete ammonia oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000863 +name: obsolete Carbon monoxide oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000864 +name: obsolete Hydrogenotrophic methanogenesis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000865 +name: obsolete Acetoclastic methanogenesis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000866 +name: obsolete Methylotrophic methanogenesis +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000867 +name: obsolete Anaerobic methane oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000868 +name: obsolete Lanthanide reduction +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000869 +name: obsolete Lanthanide oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1000870 +name: sporulation +def: "A phenotype that is relating to an organism's ability to form dormant, stress-resistant endospores." [] {IAO:0000119="GO:0043934"} +synonym: "General.keywords" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "Physiology and metabolism.spore formation.spore formation" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "sporulation" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +synonym: "sporulation" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1000871 +name: spore forming +def: "A sporulation in which an organism has the ability to produce endospores." [] {IAO:0000119="GO:0034301", IAO:0000119="https://purl.dsmz.de/schema/SporeFormation", IAO:0000119="OMP:0000017"} +synonym: "spore" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +synonym: "yes" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "yes" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000870 ! sporulation + +[Term] +id: metpo:1000872 +name: non-spore forming +def: "A sporulation in which an organism lacks the ability to produce endospores." [] {IAO:0000119="OMP:0007236", IAO:0000119="OMP:0007434", IAO:0000119="UPHENO:0083394", IAO:0000119="OMP:0000018", IAO:0000119="OMP:0007232"} +synonym: "no" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "no" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "no_spore" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000870 ! sporulation + +[Term] +id: metpo:1000881 +name: cell length +def: "A phenotype that inheres in a cell by virtue of its longer dimension when viewed on a plane." [] {IAO:0000119="OBA:2040145"} +synonym: "cell length" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1000882 +name: cell width +def: "A phenotype that inheres in a cell by virtue of its shorter dimension when viewed on a plane." [] {IAO:0000119="OBA:2040146"} +synonym: "cell width" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1000883 +name: cell length very small +synonym: "L_<=1.3" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000881 ! cell length +property_value: metpo:range_max "1.3" xsd:string +property_value: qudt:ucumCode "um" xsd:string + +[Term] +id: metpo:1000884 +name: cell length small +synonym: "L_1.3_2" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000881 ! cell length +property_value: metpo:range_max "2" xsd:string +property_value: metpo:range_min "1.3" xsd:string +property_value: qudt:ucumCode "um" xsd:string + +[Term] +id: metpo:1000885 +name: cell length medium +synonym: "L_2_3" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000881 ! cell length +property_value: metpo:range_max "3" xsd:string +property_value: metpo:range_min "2" xsd:string +property_value: qudt:ucumCode "um" xsd:string + +[Term] +id: metpo:1000886 +name: cell length large +synonym: "L_>3" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000881 ! cell length +property_value: metpo:range_min "3" xsd:string +property_value: qudt:ucumCode "um" xsd:string + +[Term] +id: metpo:1000887 +name: cell width very small +synonym: "W_<=0.5" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000882 ! cell width +property_value: metpo:range_max "0.5" xsd:string +property_value: qudt:ucumCode "um" xsd:string + +[Term] +id: metpo:1000888 +name: cell width small +synonym: "W_0.5_0.65" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000882 ! cell width +property_value: metpo:range_max "0.65" xsd:string +property_value: metpo:range_min "0.5" xsd:string +property_value: qudt:ucumCode "um" xsd:string + +[Term] +id: metpo:1000889 +name: cell width medium +synonym: "W_0.65_0.9" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000882 ! cell width +property_value: metpo:range_max "0.9" xsd:string +property_value: metpo:range_min "0.65" xsd:string +property_value: qudt:ucumCode "um" xsd:string + +[Term] +id: metpo:1000890 +name: cell width large +synonym: "W_>0.9" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1000882 ! cell width +property_value: metpo:range_min "0.9" xsd:string +property_value: qudt:ucumCode "um" xsd:string + +[Term] +id: metpo:1001000 +name: obsolete observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001001 +name: obsolete optimum temperature observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001002 +name: obsolete growth temperature observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001003 +name: obsolete temperature range observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001004 +name: obsolete temperature delta observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001005 +name: obsolete culture temperature observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001006 +name: obsolete culture NaCl observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001007 +name: obsolete growth NaCl observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001008 +name: obsolete NaCl delta observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001009 +name: obsolete NaCl range observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001010 +name: obsolete optimum NaCl observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001011 +name: obsolete culture pH observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001012 +name: obsolete growth pH observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001013 +name: obsolete optimum pH observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001014 +name: obsolete pH delta observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001015 +name: obsolete pH range observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001016 +name: obsolete optimum oxygen observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001017 +name: obsolete growth oxygen observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001018 +name: obsolete oxygen range observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001019 +name: obsolete oxygen delta observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001020 +name: obsolete oxygen observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001021 +name: obsolete temperature observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001022 +name: obsolete NaCl observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001023 +name: obsolete pH observation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1001101 +name: biosafety level +def: "A quality that categorizes biological agents according to their hazard level and required containment measures." [] +synonym: "biosafety level" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +synonym: "Safety information.risk assessment.biosafety level" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000188 ! quality + +[Term] +id: metpo:1001102 +name: biosafety level 1 +def: "A biosafety level that pose minimal potential hazard to laboratory workers and the environment, requiring only standard microbiological practices." [] +synonym: "1" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1001101 ! biosafety level +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1001103 +name: biosafety level 2 +def: "A biosafety level that pose moderate risk and are associated with human diseases present in the community." [] +synonym: "2" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1001101 ! biosafety level + +[Term] +id: metpo:1001104 +name: biosafety level 3 +def: "A biosafety level that can cause serious or potentially lethal disease through inhalation or other routes, requiring specialized containment facilities with controlled access, directional airflow, and strict safety protocols." [] +synonym: "3" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "3**" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1001101 ! biosafety level +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1001105 +name: biosafety level 4 +def: "A biosafety level that pose extreme risk of life-threatening disease through aerosol transmission with no available treatment." [] +synonym: "4" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1001101 ! biosafety level + +[Term] +id: metpo:1001106 +name: biosafety level 5 +def: "A biosafety level that is proposed as a classification beyond BSL-4 for hypothetical biological agents requiring enhanced containment." [] +synonym: "5" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1001101 ! biosafety level + +[Term] +id: metpo:1002000 +name: obsolete Sulfate-dependent methane oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002001 +name: obsolete Fe(III)-dependent methane oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002002 +name: obsolete Mn(IV)-dependent methane oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002003 +name: Cable bacteria metabolism +def: "A metabolism in which electrons are transferred over centimeter-scale distances through multicellular filaments." [] +is_a: metpo:1000060 ! metabolism + +[Term] +id: metpo:1002005 +name: Fermentation +def: "A respiration that generates energy through the oxidation of organic compounds without using an external electron acceptor, using organic molecules as both electron donors and final electron acceptors." [] {IAO:0000119="GO:0006113"} +synonym: "fermentation" RELATED [] {IAO:0000119="https://github.com/jmadin/bacteria_archaea_traits"} +synonym: "fermentation" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000800 ! respiration +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1002006 +name: Syntrophy +def: "A metabolism in which the metabolism of one species is thermodynamically dependent on the removal of its products by another species." [] +is_a: metpo:1000060 ! metabolism +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1002007 +name: obsolete Sulfur disproportionation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002008 +name: obsolete Nitrogen fixation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002009 +name: obsolete Nitrate-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002010 +name: obsolete Anaerobic ammonium-oxidizing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002011 +name: obsolete Nitrous oxide-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002012 +name: obsolete Sulfate-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002013 +name: obsolete Sulfur-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002014 +name: obsolete Sulfite-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002015 +name: obsolete Thiosulfate-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002016 +name: obsolete Sulfur-disproportionating +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002017 +name: obsolete Sulfide-oxidizing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002018 +name: obsolete Thiosulfate-oxidizing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002019 +name: obsolete Sulfite-oxidizing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002020 +name: obsolete Iron-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002021 +name: obsolete Iron-oxidizing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002022 +name: obsolete Nitrate-dependent Fe(II)-oxidizing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002023 +name: obsolete Manganese-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002024 +name: obsolete Manganese-oxidizing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002025 +name: obsolete Uranium-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002026 +name: obsolete Arsenate-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002027 +name: obsolete Selenate-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002028 +name: obsolete Selenite-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002029 +name: obsolete Perchlorate-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002030 +name: obsolete Chlorate-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002031 +name: obsolete Bromate-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002032 +name: obsolete Iodate-reducing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002033 +name: obsolete Hydrogen-oxidizing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002034 +name: obsolete Sulfur-oxidizing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002035 +name: obsolete Ammonia oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002036 +name: obsolete Nitrite oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002037 +name: obsolete Complete ammonia-oxidizing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002038 +name: obsolete Methane oxidation +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002039 +name: obsolete Carbon monoxide-oxidizing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1002040 +name: obsolete Nitrogen-fixing +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Term] +id: metpo:1003000 +name: pH growth preference +def: "A phenotype that describes how the rate and extent of population growth are affected by environmental pH." [] {IAO:0000119="OMP:0005008"} +synonym: "pH growth" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1003001 +name: neutrophilic +def: "A pH growth preference characterized by optimal growth at near-neutral pH values, typically between pH 6.5 and 7.5." [] {IAO:0000119="PATO:0070046", IAO:0000119="OMP:0005010"} +synonym: "neutralophile" EXACT [] +synonym: "neutralophilic" EXACT [] +synonym: "neutrophile" EXACT [] +is_a: metpo:1003000 ! pH growth preference +property_value: IAO:0000117 "Anthea Guo" xsd:string + +[Term] +id: metpo:1003002 +name: alkaphilic +def: "A pH growth preference in which an organism grows optimally at pH values above 9." [] {IAO:0000119="OMP:0005009", IAO:0000119="MICRO:0001549", IAO:0000119="OMP:0005010", IAO:0000119="ENVO:00002022", IAO:0000119="OMP:0005011"} +synonym: "alkaliphile" EXACT [] +synonym: "alkaliphilic" EXACT [] +synonym: "alkalophile" EXACT [] +synonym: "alkalophilic" EXACT [] +is_a: metpo:1003000 ! pH growth preference + +[Term] +id: metpo:1003003 +name: acidophilic +def: "A pH growth preference in which an organism grows optimally at pH values below 5." [] {IAO:0000119="OMP:0007945", IAO:0000119="OMP:0005009", IAO:0000119="MICRO:0001549", IAO:0000119="OMP:0005010", IAO:0000119="OMP:0005011"} +synonym: "acidophil" EXACT [] +synonym: "acidophile" EXACT [] +synonym: "acidophilic" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1003000 ! pH growth preference + +[Term] +id: metpo:1003004 +name: obligately alkaphilic +def: "A pH growth preference in which an organism requires alkaline conditions (typically pH above 8.5) for growth and cannot grow at neutral or acidic pH." [] {IAO:0000119="OMP:0007947", IAO:0000119="ENVO:00002022", IAO:0000119="MICRO:0001565", IAO:0000119="OMP:0005011", IAO:0000119="OMP:0007771"} +synonym: "obligate alkaliphile" EXACT [] +synonym: "obligate alkaphilic" EXACT [] +synonym: "obligately alkaliphilic" EXACT [] +is_a: metpo:1003000 ! pH growth preference +property_value: IAO:0000117 "Luke Wang" xsd:string + +[Term] +id: metpo:1003005 +name: facultatively alkaphilic +def: "A pH growth preference in which an organism can grow at alkaline pH but does not require it." [] {IAO:0000119="MICRO:0001558", IAO:0000119="OMP:0005009", IAO:0000119="OMP:0007947", IAO:0000119="OMP:0005011", IAO:0000119="OMP:0007771"} +synonym: "facultative alkaliphile" EXACT [] +synonym: "facultative alkaphilic" EXACT [] +synonym: "facultatively alkaliphilic" EXACT [] +is_a: metpo:1003000 ! pH growth preference + +[Term] +id: metpo:1003006 +name: obligately acidophilic +def: "A pH growth preference characterized by the requirement for acidic environments (pH below 5.5) for growth, with inability to grow at neutral or alkaline pH values." [] {IAO:0000119="MICRO:0001566"} +synonym: "obligate acidophile" EXACT [] +synonym: "obligately acidophilic" EXACT [] +is_a: metpo:1003000 ! pH growth preference +property_value: IAO:0000117 "Anthea Guo" xsd:string +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1003007 +name: facultatively acidophilic +def: "A pH growth preference characterized by optimal growth in acidic environments (pH below 5.5) with the capacity to also grow at near-neutral pH values." [] {IAO:0000119="OMP:0007945", IAO:0000119="OMP:0007009", IAO:0000119="MICRO:0001557", IAO:0000119="OMP:0005009", IAO:0000119="OMP:0005010"} +synonym: "facultative acidophile" EXACT [] +synonym: "facultatively acidophilic" EXACT [] +is_a: metpo:1003000 ! pH growth preference +property_value: IAO:0000117 "Anthea Guo" xsd:string +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1003008 +name: acidotolerant +def: "A pH growth preference characterized by the ability to tolerate acidic environments (typically pH below 5.5) while maintaining optimal growth near neutral pH." [] {IAO:0000119="MICRO:0001555"} +synonym: "aciduric" EXACT [] +is_a: metpo:1003000 ! pH growth preference +property_value: IAO:0000117 "Anthea Guo" xsd:string +property_value: IAO:0000117 "Jed Dongjin Kim-Ozaeta" xsd:string + +[Term] +id: metpo:1003009 +name: alkalotolerant +def: "A pH growth preference in which an organism can tolerate alkaline pH but grows optimally at neutral pH." [] {IAO:0000119="OMP:0005009", IAO:0000119="OMP:0007947", IAO:0000119="OMP:0005011", IAO:0000119="OMP:0007771", IAO:0000119="OMP:0007011"} +synonym: "alkalitolerant" EXACT [] +is_a: metpo:1003000 ! pH growth preference + +[Term] +id: metpo:1003021 +name: pigmentation +def: "A phenotype characterized by the color of pigments produced by a microorganism." [] {IAO:0000119="GO:0043473"} +synonym: "cell color" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1003022 +name: black pigmented +synonym: "Pigment_black" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1003021 ! pigmentation + +[Term] +id: metpo:1003023 +name: brown pigmented +synonym: "Pigment_brown" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1003021 ! pigmentation + +[Term] +id: metpo:1003024 +name: cream pigmented +synonym: "Pigment_cream" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1003021 ! pigmentation + +[Term] +id: metpo:1003025 +name: green pigmented +synonym: "Pigment_green" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1003021 ! pigmentation + +[Term] +id: metpo:1003026 +name: orange pigmented +synonym: "Pigment_orange" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1003021 ! pigmentation + +[Term] +id: metpo:1003027 +name: pink pigmented +synonym: "Pigment_pink" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1003021 ! pigmentation + +[Term] +id: metpo:1003028 +name: red pigmented +synonym: "Pigment_red" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1003021 ! pigmentation + +[Term] +id: metpo:1003029 +name: white pigmented +synonym: "Pigment_white" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1003021 ! pigmentation + +[Term] +id: metpo:1003030 +name: yellow pigmented +synonym: "Pigment_yellow" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +synonym: "yellow pigment" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1003021 ! pigmentation + +[Term] +id: metpo:1003031 +name: carotenoid pigmentation +synonym: "Pigment_carotenoid" RELATED [] {IAO:0000119="https://ordar.otelo.univ-lorraine.fr/files/ORDAR-53/BactoTraits_databaseV2_Jun2022.csv"} +is_a: metpo:1003021 ! pigmentation + +[Term] +id: metpo:1004000 +name: pathogenic to host +def: "A phenotype where a microbe is a pathogen of of some host organism." [] {IAO:0000119="OMP:0000068", IAO:0000119="OMP:0007284"} +synonym: "General.keywords" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "Safety information.risk assessment" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1004002 +name: animal pathogen +def: "A pathogen that infects organisms in the kingdom Metazoa." [] +synonym: "animal pathogen" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1004000 ! pathogenic to host + +[Term] +id: metpo:1004003 +name: plant pathogen +def: "A pathogen that infects organisms in the kingdom Viridiplantae." [] +synonym: "plant pathogen" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1004000 ! pathogenic to host + +[Term] +id: metpo:1004004 +name: human pathogen +def: "A pathogen that infects organisms of the species Homo sapiens." [] {IAO:0000119="IDO:0000639"} +synonym: "human pathogen" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:1004000 ! pathogenic to host + +[Term] +id: metpo:1004005 +name: growth medium +def: "A material entity that provides the nutrients and environmental conditions necessary for the cultivation of microorganisms in vitro. Growth media may be liquid (broth) or solid (agar-based) and are formulated to support the growth of specific types of organisms." [] {IAO:0000119="OBI:0000079"} +comment: This class is equivalent to OBI:0000079 'culture medium'. It is included in METPO to serve as the range for growth-related object properties. +is_a: metpo:1000186 ! material entity +property_value: skos:broadMatch https://biolink.github.io/biolink-model/ProcessedMaterial + +[Term] +id: metpo:1005001 +name: nitrification +def: "A biological process in which ammonia is oxidized to nitrite (ammonia oxidation) and nitrite is oxidized to nitrate (nitrite oxidation), in two steps." [] {IAO:0000119="GO:0019332", IAO:0000119="GO:0019329"} +comment: MetaTraits maps to OMIT:0027217 (wrong ontology). Correct GO terms are GO:0019329 (ammonia oxidation) and GO:0019332 (nitrite oxidation). +synonym: "nitrification" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000630 ! biological process + +[Term] +id: metpo:1005010 +name: indole test +def: "An assay that tests the ability of an organism to produce indole from tryptophan." [] {IAO:0000119="MICRO:0000430"} +synonym: "indole test" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1005011 +name: indole test positive +def: "A phenotype in which an organism tests positive in the indole test, indicating it produces indole from tryptophan." [] +synonym: "indole test" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1005010 ! indole test + +[Term] +id: metpo:1005012 +name: indole test negative +def: "A phenotype in which an organism tests negative in the indole test, indicating it does not produce indole from tryptophan." [] +is_a: metpo:1005010 ! indole test + +[Term] +id: metpo:1005013 +name: methyl red test +def: "An assay that tests the ability of an organism to produce and maintain stable acid end products from glucose fermentation." [] {IAO:0000119="SNOMED:5894006"} +synonym: "methyl red test" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1005014 +name: methyl red test positive +def: "A phenotype in which an organism tests positive in the methyl red test, indicating mixed acid fermentation." [] +synonym: "methyl red test" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1005013 ! methyl red test + +[Term] +id: metpo:1005015 +name: methyl red test negative +def: "A phenotype in which an organism tests negative in the methyl red test." [] +is_a: metpo:1005013 ! methyl red test + +[Term] +id: metpo:1005016 +name: Voges-Proskauer test +def: "An assay that tests the ability of an organism to produce acetoin from glucose via the butanediol fermentation pathway." [] {IAO:0000119="SNOMED:66592006"} +synonym: "voges-proskauer test" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1005017 +name: Voges-Proskauer test positive +def: "A phenotype in which an organism tests positive in the Voges-Proskauer test, indicating acetoin production." [] +synonym: "voges-proskauer test" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1005016 ! Voges-Proskauer test + +[Term] +id: metpo:1005018 +name: Voges-Proskauer test negative +def: "A phenotype in which an organism tests negative in the Voges-Proskauer test." [] +is_a: metpo:1005016 ! Voges-Proskauer test + +[Term] +id: metpo:1005021 +name: capnophilic +def: "A phenotype describing an organism that requires elevated concentrations of carbon dioxide for growth." [] {IAO:0000119="SNOMED:413748004"} +synonym: "capnophilic" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000601 ! oxygen preference + +[Term] +id: metpo:1005025 +name: hemolysis +def: "A phenotype describing the ability of an organism to lyse red blood cells." [] {IAO:0000119="OMP:0005117"} +synonym: "presence of hemolysis" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1005026 +name: hemolytic +def: "A phenotype in which an organism is capable of lysing red blood cells." [] +is_a: metpo:1005025 ! hemolysis + +[Term] +id: metpo:1005027 +name: non-hemolytic +def: "A phenotype in which an organism does not lyse red blood cells." [] +is_a: metpo:1005025 ! hemolysis + +[Term] +id: metpo:1005031 +name: peritrichous flagellation +def: "A motility phenotype in which flagella are distributed over the entire cell surface." [] {IAO:0000119="OMP:0000078"} +synonym: "flagellum arrangement" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000704 ! flagellated + +[Term] +id: metpo:1005032 +name: polar flagellation +def: "A motility phenotype in which one or more flagella are located at one or both poles of the cell." [] +synonym: "flagellum arrangement" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000704 ! flagellated + +[Term] +id: metpo:1005033 +name: amphitrichous flagellation +def: "A motility phenotype in which a single flagellum is present at each pole of the cell." [] +is_a: metpo:1000704 ! flagellated + +[Term] +id: metpo:1005034 +name: lophotrichous flagellation +def: "A motility phenotype in which a tuft of flagella is present at one or both poles of the cell." [] +is_a: metpo:1000704 ! flagellated + +[Term] +id: metpo:1005035 +name: monotrichous flagellation +def: "A motility phenotype in which a single flagellum is present at one pole of the cell." [] +is_a: metpo:1000704 ! flagellated + +[Term] +id: metpo:1005036 +name: lateral flagellation +def: "A motility phenotype in which flagella emerge from the lateral side of the cell." [] +is_a: metpo:1000704 ! flagellated + +[Term] +id: metpo:1005037 +name: subpolar flagellation +def: "A motility phenotype in which flagella are located near but not at the cell pole." [] +is_a: metpo:1000704 ! flagellated + +[Term] +id: metpo:1005038 +name: denitrification +def: "A biological process in which nitrate or nitrite is reduced to gaseous nitrogen compounds (NO, N2O, or N2) under anaerobic or microaerobic conditions." [] {IAO:0000119="GO:0019333"} +synonym: "denitrification pathway" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000630 ! biological process + +[Term] +id: metpo:1005039 +name: nitrogen fixation +def: "A biological process in which atmospheric dinitrogen is reduced to ammonia, catalyzed by nitrogenase." [] {IAO:0000119="GO:0009399"} +synonym: "nitrogen fixation" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000630 ! biological process + +[Term] +id: metpo:1005040 +name: generalist +def: "A phenotype describing an organism with a broad ecological niche, capable of thriving across diverse environments or utilizing varied resources." [] {IAO:0000119="inbio:000022"} +synonym: "generalist" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:1000059 ! phenotype + +[Term] +id: metpo:1007005 +name: flagellar arrangement +def: "A phenotype characterized by the arrangement pattern of flagella on a bacterial or archaeal cell (e.g. peritrichous, polar, amphitrichous, lophotrichous, monotrichous, lateral, subpolar)." [] {IAO:0000119="OMP:0000078"} +comment: subset=metpo_proposal_2026_04; priority=HIGH; xrefs=GO:0001539 +synonym: "flagellation pattern" EXACT [] +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007006 +name: polytrichous flagellation +def: "A flagellar arrangement in which multiple flagella (typically a tuft) are present per cell, often combined with polar attachment." [] {IAO:0000119="MICRO:0000271"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM; observations=4 +synonym: "polytrichous" EXACT [] +is_a: metpo:1007005 ! flagellar arrangement +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007062 +name: colony morphology +def: "A phenotype characterized by macroscopic colony characteristics such as shape, margin, elevation, surface, colour, and size." [] {IAO:0000119="OMP:0000100"} +comment: subset=metpo_proposal_2026_04; priority=LOW; xrefs=PATO:0000052 +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007063 +name: colony shape +def: "A colony morphology characterized by the overall macroscopic colony outline as observed on solid medium." [] {IAO:0000119="OMP:0000103"} +comment: subset=metpo_proposal_2026_04; priority=LOW; xrefs=PATO:0000052 +is_a: metpo:1007062 ! colony morphology +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007064 +name: circular colony +def: "A colony shape that has a regular round outline." [] {IAO:0000119="OMP:0000166"} +comment: subset=metpo_proposal_2026_04; priority=LOW; observations=2649 +synonym: "round colony" EXACT [] +is_a: metpo:1007063 ! colony shape +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007065 +name: irregular colony +def: "A colony shape that has an irregular (non-round, non-rhizoid) outline." [] {IAO:0000119="OMP:0000167"} +comment: subset=metpo_proposal_2026_04; priority=LOW; observations=148 +is_a: metpo:1007063 ! colony shape +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007066 +name: filamentous colony +def: "A colony shape that has a thread-like or filamentous outline." [] {IAO:0000119="OMP:0000088"} +comment: subset=metpo_proposal_2026_04; priority=LOW; observations=16 +is_a: metpo:1007063 ! colony shape +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007067 +name: punctiform colony +def: "A colony shape that is very small (pinpoint), typically <1 mm in diameter." [] {IAO:0000119="OMP:0000240"} +comment: subset=metpo_proposal_2026_04; priority=LOW; observations=11 +is_a: metpo:1007063 ! colony shape +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007068 +name: rhizoid colony +def: "A colony shape that has a branching, root-like outline." [] {IAO:0000119="OMP:0000168"} +comment: subset=metpo_proposal_2026_04; priority=LOW; observations=8 +is_a: metpo:1007063 ! colony shape +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007069 +name: fried-egg-shaped colony +def: "A colony shape that has a raised opaque centre and a translucent peripheral zone, resembling a fried egg." [] {IAO:0000119="MICRO:0000349"} +comment: subset=metpo_proposal_2026_04; priority=LOW; observations=6 +synonym: "fried-egg colony" EXACT [] +is_a: metpo:1007063 ! colony shape +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007070 +name: pressure tolerance +def: "A phenotype characterized by the ability to grow under elevated hydrostatic pressure." [] {IAO:0000119="OMP:0005012"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +synonym: "barophile" EXACT [] +synonym: "piezophile" EXACT [] +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007071 +name: barophile phenotype +def: "A pressure tolerance in which an organism requires or tolerates elevated hydrostatic pressure for growth." [] {IAO:0000119="MICRO:0001359"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +is_a: metpo:1007070 ! pressure tolerance +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007072 +name: radiation tolerance +def: "A phenotype characterized by the ability to withstand ionizing or UV radiation." [] {IAO:0000119="wikidata:Q2353022"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +synonym: "radioresistant" EXACT [] +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007073 +name: osmotic tolerance +def: "A phenotype characterized by the ability to grow under high osmotic pressure (non-NaCl)." [] {IAO:0000119="OMP:0005015"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +synonym: "osmophile" EXACT [] +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007074 +name: metal tolerance +def: "A phenotype characterized by the ability to grow in the presence of elevated metal concentrations." [] {IAO:0000119="OMP:0007890"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +synonym: "metallophile" EXACT [] +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007076 +name: capsule presence +def: "A phenotype characterized by the presence of an extracellular polysaccharide capsule." [] {IAO:0000119="OMP:0000203"} +comment: subset=metpo_proposal_2026_04; priority=LOW; xrefs=GO:0042603 +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007077 +name: biofilm formation capability +def: "A phenotype characterized by the ability to form surface-attached biofilms." [] {IAO:0000119="OMP:0000176"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM; xrefs=GO:0042710 +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007080 +name: catalase test +def: "A biochemical test that detects catalase enzyme activity by exposing cells to hydrogen peroxide and observing for visible bubbling. The test outcome (positive or negative) is captured by its child classes; this class itself does not assert that the organism has catalase activity." [] {IAO:0000119="OMP:0000218"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +synonym: "catalase activity test" EXACT [] +synonym: "catalase assay" EXACT [] +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007081 +name: oxidase test +def: "A biochemical test that detects cytochrome c oxidase activity using a redox indicator. The test outcome (positive or negative) is captured by its child classes; this class itself does not assert oxidase activity." [] {IAO:0000119="OMP:0000220"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +synonym: "cytochrome oxidase test" EXACT [] +synonym: "oxidase activity test" EXACT [] +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007082 +name: urease test +def: "A biochemical test that detects urease enzyme activity by observing urea hydrolysis (typically via a pH-indicator color change). The test outcome (positive or negative) is captured by its child classes; this class itself does not assert urease activity." [] {IAO:0000119="OMP:0000222"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +synonym: "urea hydrolysis test" EXACT [] +synonym: "urease activity test" EXACT [] +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007083 +name: catalase positive +def: "Test-outcome phenotype where the catalase test yields a positive result (visible bubbling on H2O2). The underlying enzyme-organism relation should additionally be asserted via METPO:2000302 'shows activity of' GO:0004096 'catalase activity'." [] {IAO:0000119="OMP:0000194"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM; xrefs=GO:0004096 +synonym: "catalase +" EXACT [] +synonym: "catalase test positive" EXACT [] +is_a: metpo:1007080 ! catalase test +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007084 +name: catalase negative +def: "Test-outcome phenotype where the catalase test yields a negative result (no bubbling on H2O2). The underlying enzyme-organism relation should additionally be asserted via METPO:2000303 'does not show activity of' GO:0004096 'catalase activity'." [] {IAO:0000119="OMP:0000198"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +synonym: "catalase -" EXACT [] +synonym: "catalase test negative" EXACT [] +is_a: metpo:1007080 ! catalase test +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007085 +name: oxidase positive +def: "Test-outcome phenotype where the oxidase test yields a positive result. The underlying enzyme-organism relation should additionally be asserted via METPO:2000302 'shows activity of' GO:0004129 'cytochrome-c oxidase activity'." [] {IAO:0000119="OMP:0006085"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM; xrefs=GO:0004129 +synonym: "oxidase +" EXACT [] +synonym: "oxidase test positive" EXACT [] +is_a: metpo:1007081 ! oxidase test +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007086 +name: oxidase negative +def: "Test-outcome phenotype where the oxidase test yields a negative result. The underlying enzyme-organism relation should additionally be asserted via METPO:2000303 'does not show activity of' GO:0004129 'cytochrome-c oxidase activity'." [] {IAO:0000119="OMP:0006084"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +synonym: "oxidase -" EXACT [] +synonym: "oxidase test negative" EXACT [] +is_a: metpo:1007081 ! oxidase test +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007087 +name: urease positive +def: "Test-outcome phenotype where the urease test yields a positive result. The underlying enzyme-organism relation should additionally be asserted via METPO:2000302 'shows activity of' GO:0009039 'urease activity'." [] {IAO:0000119="OMP:0006089"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM; xrefs=GO:0009039 +synonym: "urease +" EXACT [] +synonym: "urease test positive" EXACT [] +is_a: metpo:1007082 ! urease test +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007088 +name: urease negative +def: "Test-outcome phenotype where the urease test yields a negative result. The underlying enzyme-organism relation should additionally be asserted via METPO:2000303 'does not show activity of' GO:0009039 'urease activity'." [] {IAO:0000119="OMP:0006090"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +synonym: "urease -" EXACT [] +synonym: "urease test negative" EXACT [] +is_a: metpo:1007082 ! urease test +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007089 +name: coagulase activity +def: "A phenotype characterized by coagulase enzyme activity (clotting of blood plasma); a diagnostic marker, e.g. for Staphylococcus aureus." [] {IAO:0000119="MICRO:0000991"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +synonym: "coagulase test" EXACT [] +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007090 +name: coagulase positive +def: "Test-outcome phenotype where the coagulase test yields a positive result (plasma clotting). The underlying enzyme-organism relation should additionally be asserted via METPO:2000302 'shows activity of' once a sufficiently specific enzyme term is selected (no GO/EC term currently exists at the bacteriological coagulase test granularity)." [] {IAO:0000119="wikidata:Q98095684"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +synonym: "coagulase +" EXACT [] +synonym: "coagulase test positive" EXACT [] +is_a: metpo:1007089 ! coagulase activity +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007091 +name: coagulase negative +def: "Test-outcome phenotype where the coagulase test yields a negative result. The underlying enzyme-organism relation should additionally be asserted via METPO:2000303 'does not show activity of' once a sufficiently specific enzyme term is selected." [] {IAO:0000119="wikidata:Q98095684"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +synonym: "coagulase -" EXACT [] +synonym: "coagulase test negative" EXACT [] +is_a: metpo:1007089 ! coagulase activity +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007092 +name: xerophilic phenotype +def: "A phenotype characterized by a microbe that thrives in low water-activity environments (typically aw < 0.85), where the limiting factor is water activity (aw) rather than solute concentration; distinct from halophily and osmotic tolerance." [] {IAO:0000119="wikidata:Q980491"} +comment: subset=metpo_proposal_2026_04; priority=MEDIUM +synonym: "xerophile" EXACT [] +synonym: "xerotolerant" EXACT [] +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:1007093 +name: epibiont phenotype +def: "A phenotype characterized by a microbe that lives on the external surface of a host organism or substrate, as distinct from endosymbionts (which live inside the host); captures host-association mode, not specific host taxonomy." [] {IAO:0000119="wikidata:Q640114"} +comment: subset=metpo_proposal_2026_04; priority=LOW +synonym: "ectosymbiont" EXACT [] +synonym: "epibiont" EXACT [] +is_a: metpo:1000059 ! phenotype +property_value: IAO:0000117 "Marcin Joachimiak" xsd:string + +[Term] +id: metpo:9999999 +name: obsolete obsolete +is_a: oboInOwl:ObsoleteClass +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000000 +name: obsolete has susceptibility profile +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000001 +name: organism interacts with chemical +domain: metpo:1000525 ! microbe +range: metpo:1000526 ! chemical entity + +[Typedef] +id: metpo:2000002 +name: assimilates +synonym: "assimilation" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000003 +name: builds acid from +synonym: "builds acid from" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000004 +name: builds base from +synonym: "builds base from" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000005 +name: builds gas from +synonym: "builds gas from" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000006 +name: uses as carbon source +synonym: "carbon source" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000007 +name: degrades +synonym: "degradation" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000008 +name: uses as electron acceptor +synonym: "electron acceptor" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000009 +name: uses as electron donor +synonym: "electron donor" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000010 +name: uses as energy source +synonym: "energy source" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000011 +name: ferments +synonym: "fermentation" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000012 +name: uses for growth +synonym: "growth" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000013 +name: hydrolyzes +synonym: "hydrolysis" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000014 +name: uses as nitrogen source +synonym: "nitrogen source" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000015 +name: uses in other way +synonym: "other" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "utilizes" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000016 +name: oxidizes +synonym: "oxidation" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000017 +name: reduces +synonym: "reduction" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000018 +name: requires for growth +synonym: "required for growth" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000019 +name: uses for respiration +synonym: "respiration" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000020 +name: uses as sulfur source +synonym: "sulfur source" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000021 +name: does not use for aerobic catabolization +synonym: "aerobic catabolization" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000022 +name: does not use for aerobic growth +synonym: "aerobic growth" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000023 +name: does not use for anaerobic catabolization +synonym: "anaerobic catabolization" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000024 +name: does not use for anaerobic growth +synonym: "anaerobic growth" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000025 +name: does not use for anaerobic growth in the dark +synonym: "anaerobic growth in the dark" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000026 +name: does not use for anaerobic growth with light +synonym: "anaerobic growth with light" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000027 +name: does not assimilate +synonym: "assimilation" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000028 +name: does not build acid from +synonym: "builds acid from" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000029 +name: does not build base from +synonym: "builds base from" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000030 +name: does not build gas from +synonym: "builds gas from" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000031 +name: does not use as carbon source +synonym: "carbon source" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000032 +name: uses for aerobic catabolization +synonym: "aerobic catabolization" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000033 +name: does not degrade +synonym: "degradation" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000034 +name: does not use as electron acceptor +synonym: "electron acceptor" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000035 +name: does not use as electron donor +synonym: "electron donor" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000036 +name: does not use as energy source +synonym: "energy source" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000037 +name: does not ferment +synonym: "fermentation" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000038 +name: does not use for growth +synonym: "growth" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000039 +name: does not hydrolyze +synonym: "hydrolysis" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000040 +name: does not use as nitrogen source +synonym: "nitrogen source" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000041 +name: does not use in other way +synonym: "other" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +synonym: "utilizes" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000042 +name: does not oxidize +synonym: "oxidation" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000043 +name: uses for aerobic growth +synonym: "aerobic growth" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000044 +name: does not reduce +synonym: "reduction" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000045 +name: is not required for growth +synonym: "required for growth" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000046 +name: does not use for respiration +synonym: "respiration" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000047 +name: does not use as sulfur source +synonym: "sulfur source" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000048 +name: uses for anaerobic catabolization +synonym: "anaerobic catabolization" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000049 +name: uses for anaerobic growth +synonym: "anaerobic growth" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000050 +name: uses for anaerobic growth in the dark +synonym: "anaerobic growth in the dark" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000051 +name: uses for anaerobic growth with light +synonym: "anaerobic growth with light" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000052 +name: obsolete has temperature observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000053 +name: obsolete has optimum temperature observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000054 +name: obsolete has growth temperature observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000055 +name: obsolete has range temperature observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000056 +name: obsolete has temperature delta observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000057 +name: obsolete has culture temperature observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000064 +name: tolerates +def: "A relation between a microbe and a chemical entity indicating that the microbe's growth is not inhibited by the chemical at the concentration tested. Positive form of the chemical-tolerance pair; the negative form is METPO:2000065 'does not tolerate'." [] +domain: metpo:1000525 ! microbe +range: metpo:1000526 ! chemical entity + +[Typedef] +id: metpo:2000065 +name: does not tolerate +def: "A relation between a microbe and a chemical entity indicating that the microbe's growth is inhibited by the chemical at the concentration tested. Negative form of the chemical-tolerance pair; positive form is METPO:2000064 'tolerates'. Equivalent in meaning to 'is susceptible to' and 'is sensitive to'; the canonical label uses the 'does not X' convention so the metatraits pairing logic auto-detects it as the negative member." [] +domain: metpo:1000525 ! microbe +range: metpo:1000526 ! chemical entity + +[Typedef] +id: metpo:2000067 +name: isolated from host with quality +def: "A relation between a microbe and a quality of the host from which the microbe was isolated. Examples: a microbe isolated from a juvenile host has the relation ` METPO:2000067 PATO:0001190 'juvenile'`; a microbe isolated from a female host has the relation ` METPO:2000067 PATO:0000383 'female'`. The relation is one-directional: it asserts that the host bore the named quality at isolation time, not that the microbe itself has the quality." [] +domain: metpo:1000525 ! microbe +range: metpo:1000188 ! quality + +[Typedef] +id: metpo:2000068 +name: isolated from environment with quality +def: "A relation between a microbe and a quality of the environment from which the microbe was isolated. Examples: a microbe isolated from an acidic environment has the relation ` METPO:2000068 PATO:0001429 'acidic'`; a microbe isolated from an anaerobic environment has ` METPO:2000068 PATO:0001456 'anaerobic'`. The relation does not by itself entail that the microbe is acidophilic, anaerobic, etc. as a phenotype — it only records the environment's quality at the time of isolation. Microbe phenotype assertions belong on a separate edge (e.g. METPO:1000615 acidophilic via has_phenotype)." [] +domain: metpo:1000525 ! microbe +range: metpo:1000188 ! quality + +[Typedef] +id: metpo:2000101 +name: has quality +domain: metpo:1000525 ! microbe +range: metpo:1000188 ! quality + +[Typedef] +id: metpo:2000102 +name: has phenotype +property_value: skos:closeMatch has:phenotype +domain: metpo:1000525 ! microbe +range: metpo:1000059 ! phenotype +is_a: metpo:2000101 ! has quality + +[Typedef] +id: metpo:2000103 +name: capable of +property_value: skos:closeMatch capable:of +domain: metpo:1000525 ! microbe +range: metpo:1000630 ! biological process + +[Typedef] +id: metpo:2000200 +name: disproportionates +synonym: "dismutates" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000201 +name: obsolete lyses +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000202 +name: produces +synonym: "produces" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000203 +name: obsolete fixes +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000204 +name: obsolete catabolizes +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000205 +name: obsolete mineralizes +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000206 +name: obsolete conjugates +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000207 +name: transports +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000208 +name: imports +domain: metpo:1000525 ! microbe +range: metpo:1000526 ! chemical entity +is_a: metpo:2000207 ! transports + +[Typedef] +id: metpo:2000209 +name: exports +domain: metpo:1000525 ! microbe +range: metpo:1000526 ! chemical entity +is_a: metpo:2000207 ! transports + +[Typedef] +id: metpo:2000210 +name: accumulates +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000211 +name: sequesters +domain: metpo:1000525 ! microbe +range: metpo:1000526 ! chemical entity +is_a: metpo:2000210 ! accumulates + +[Typedef] +id: metpo:2000212 +name: compartmentalizes +domain: metpo:1000525 ! microbe +range: metpo:1000526 ! chemical entity +is_a: metpo:2000210 ! accumulates + +[Typedef] +id: metpo:2000213 +name: obsolete binds +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000214 +name: obsolete chelates +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000215 +name: obsolete precipitates +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000216 +name: obsolete solubilizes +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000217 +name: obsolete volatilizes +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000218 +name: obsolete crystallizes +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000219 +name: obsolete adsorbs +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000220 +name: does not disproportionate +synonym: "dismutates" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000221 +name: obsolete does not lyse +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000222 +name: does not produce +synonym: "produces" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000223 +name: obsolete does not fix +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000224 +name: obsolete does not catabolize +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000225 +name: obsolete does not mineralize +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000226 +name: obsolete does not conjugate +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000227 +name: does not transport +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000228 +name: does not import +domain: metpo:1000525 ! microbe +range: metpo:1000526 ! chemical entity +is_a: metpo:2000227 ! does not transport + +[Typedef] +id: metpo:2000229 +name: does not export +domain: metpo:1000525 ! microbe +range: metpo:1000526 ! chemical entity +is_a: metpo:2000227 ! does not transport + +[Typedef] +id: metpo:2000230 +name: does not accumulate +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000231 +name: does not sequester +domain: metpo:1000525 ! microbe +range: metpo:1000526 ! chemical entity +is_a: metpo:2000230 ! does not accumulate + +[Typedef] +id: metpo:2000232 +name: does not compartmentalize +domain: metpo:1000525 ! microbe +range: metpo:1000526 ! chemical entity +is_a: metpo:2000230 ! does not accumulate + +[Typedef] +id: metpo:2000233 +name: obsolete does not bind +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000234 +name: obsolete does not chelate +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000235 +name: obsolete does not precipitate +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000236 +name: obsolete does not solubilize +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000237 +name: obsolete does not volatilize +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000238 +name: obsolete does not crystallize +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000239 +name: obsolete has pH observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000301 +name: enzyme activity analyzed +synonym: "Physiology and metabolism.enzymes.[].activity" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +domain: metpo:1000525 ! microbe +range: metpo:1000527 ! enzyme + +[Typedef] +id: metpo:2000302 +name: shows activity of +synonym: "Physiology and metabolism.enzymes.[].activity" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +domain: metpo:1000525 ! microbe +range: metpo:1000527 ! enzyme +is_a: metpo:2000301 ! enzyme activity analyzed + +[Typedef] +id: metpo:2000303 +name: does not show activity of +synonym: "Physiology and metabolism.enzymes.[].activity" RELATED [] {IAO:0000119="https://bacdive.dsmz.de/"} +domain: metpo:1000525 ! microbe +range: metpo:1000527 ! enzyme +is_a: metpo:2000301 ! enzyme activity analyzed + +[Typedef] +id: metpo:2000501 +name: obsolete has optimum pH observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000502 +name: obsolete has growth pH observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000503 +name: obsolete has range pH observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000504 +name: obsolete has pH delta observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000505 +name: obsolete has culture pH observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000506 +name: obsolete has NaCl observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000507 +name: obsolete has optimum NaCl observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000508 +name: obsolete has growth NaCl observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000509 +name: obsolete has range NaCl observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000510 +name: obsolete has NaCl delta observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000511 +name: obsolete has observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000512 +name: obsolete has oxygen observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000513 +name: obsolete has optimum oxygen observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000514 +name: obsolete has growth oxygen observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000515 +name: obsolete has range oxygen observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000516 +name: obsolete has oxygen delta observation +property_value: IAO:0000231 IAO:0000226 +is_obsolete: true + +[Typedef] +id: metpo:2000517 +name: grows in +def: "A relation between a microbe and a growth medium indicating that the microbe has been demonstrated to grow in that medium under some set of conditions. This relation represents a generalization from experimental observations reported in the literature or databases; it does not imply that the microbe will grow in the medium under all conditions." [] +domain: metpo:1000525 ! microbe +range: metpo:1004005 ! growth medium + +[Typedef] +id: metpo:2000518 +name: does not grow in +def: "A relation between a microbe and a growth medium indicating that the microbe has been demonstrated to fail to grow in that medium under some set of conditions. This relation represents a generalization from experimental observations reported in the literature or databases; it does not imply that the microbe cannot grow in the medium under any conditions." [] +domain: metpo:1000525 ! microbe +range: metpo:1004005 ! growth medium + +[Typedef] +id: metpo:2000601 +name: denitrifies +synonym: "denitrification" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000602 +name: does not denitrify +synonym: "denitrification" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000603 +name: ammonifies +synonym: "ammonification" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000604 +name: does not ammonify +synonym: "ammonification" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000605 +name: oxidizes in darkness +synonym: "oxidation in darkness" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + +[Typedef] +id: metpo:2000606 +name: does not oxidize in darkness +synonym: "oxidation in darkness" RELATED [] {IAO:0000119="https://metatraits.embl.de/"} +is_a: metpo:2000001 ! organism interacts with chemical + diff --git a/metpo-base.owl b/metpo-base.owl index e23b16a6..e312894b 100644 --- a/metpo-base.owl +++ b/metpo-base.owl @@ -3,12 +3,17 @@ xml:base="https://w3id.org/metpo/metpo-base.owl" xmlns:IAO="http://purl.obolibrary.org/obo/IAO_" xmlns:dce="http://purl.org/dc/elements/1.1/" + xmlns:obo="http://purl.obolibrary.org/obo/" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" + xmlns:qudt="http://qudt.org/schema/qudt/" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" - xmlns:dcterms="http://purl.org/dc/terms/"> + xmlns:skos="http://www.w3.org/2004/02/skos/core#" + xmlns:metpo="https://w3id.org/metpo/" + xmlns:dcterms="http://purl.org/dc/terms/" + xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> @@ -38,6 +43,30 @@ + + + + + + + + + + + + + + + + + + + + + + + + @@ -83,6 +112,22828 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + obsolete has susceptibility profile + true + + + + + + + + + + organism interacts with chemical + + + + + + + + + assimilation + assimilates + + + + + assimilation + + + + + + + + + + builds acid from + builds acid from + + + + + builds acid from + + + + + + + + + + builds base from + builds base from + + + + + builds base from + + + + + + + + + + builds gas from + builds gas from + + + + + builds gas from + + + + + + + + + + carbon source + uses as carbon source + + + + + carbon source + + + + + + + + + + degradation + degrades + + + + + degradation + + + + + + + + + + electron acceptor + uses as electron acceptor + + + + + electron acceptor + + + + + + + + + + electron donor + uses as electron donor + + + + + electron donor + + + + + + + + + + energy source + uses as energy source + + + + + energy source + + + + + + + + + + fermentation + ferments + + + + + fermentation + + + + + + + + + + growth + uses for growth + + + + + growth + + + + + + + + + + hydrolysis + hydrolyzes + + + + + hydrolysis + + + + + + + + + + nitrogen source + uses as nitrogen source + + + + + nitrogen source + + + + + + + + + + other + utilizes + uses in other way + + + + + other + + + + + + utilizes + + + + + + + + + + oxidation + oxidizes + + + + + oxidation + + + + + + + + + + reduction + reduces + + + + + reduction + + + + + + + + + + required for growth + requires for growth + + + + + required for growth + + + + + + + + + + respiration + uses for respiration + + + + + respiration + + + + + + + + + + sulfur source + uses as sulfur source + + + + + sulfur source + + + + + + + + + + aerobic catabolization + does not use for aerobic catabolization + + + + + aerobic catabolization + + + + + + + + + + aerobic growth + does not use for aerobic growth + + + + + aerobic growth + + + + + + + + + + anaerobic catabolization + does not use for anaerobic catabolization + + + + + anaerobic catabolization + + + + + + + + + + anaerobic growth + does not use for anaerobic growth + + + + + anaerobic growth + + + + + + + + + + anaerobic growth in the dark + does not use for anaerobic growth in the dark + + + + + anaerobic growth in the dark + + + + + + + + + + anaerobic growth with light + does not use for anaerobic growth with light + + + + + anaerobic growth with light + + + + + + + + + + assimilation + does not assimilate + + + + + assimilation + + + + + + + + + + builds acid from + does not build acid from + + + + + builds acid from + + + + + + + + + + builds base from + does not build base from + + + + + builds base from + + + + + + + + + + builds gas from + does not build gas from + + + + + builds gas from + + + + + + + + + + carbon source + does not use as carbon source + + + + + carbon source + + + + + + + + + + aerobic catabolization + uses for aerobic catabolization + + + + + aerobic catabolization + + + + + + + + + + degradation + does not degrade + + + + + degradation + + + + + + + + + + electron acceptor + does not use as electron acceptor + + + + + electron acceptor + + + + + + + + + + electron donor + does not use as electron donor + + + + + electron donor + + + + + + + + + + energy source + does not use as energy source + + + + + energy source + + + + + + + + + + fermentation + does not ferment + + + + + fermentation + + + + + + + + + + growth + does not use for growth + + + + + growth + + + + + + + + + + hydrolysis + does not hydrolyze + + + + + hydrolysis + + + + + + + + + + nitrogen source + does not use as nitrogen source + + + + + nitrogen source + + + + + + + + + + other + utilizes + does not use in other way + + + + + other + + + + + + utilizes + + + + + + + + + + oxidation + does not oxidize + + + + + oxidation + + + + + + + + + + aerobic growth + uses for aerobic growth + + + + + aerobic growth + + + + + + + + + + reduction + does not reduce + + + + + reduction + + + + + + + + + + required for growth + is not required for growth + + + + + required for growth + + + + + + + + + + respiration + does not use for respiration + + + + + respiration + + + + + + + + + + sulfur source + does not use as sulfur source + + + + + sulfur source + + + + + + + + + + anaerobic catabolization + uses for anaerobic catabolization + + + + + anaerobic catabolization + + + + + + + + + + anaerobic growth + uses for anaerobic growth + + + + + anaerobic growth + + + + + + + + + + anaerobic growth in the dark + uses for anaerobic growth in the dark + + + + + anaerobic growth in the dark + + + + + + + + + + anaerobic growth with light + uses for anaerobic growth with light + + + + + anaerobic growth with light + + + + + + + + + + obsolete has temperature observation + true + + + + + + + + + obsolete has optimum temperature observation + true + + + + + + + + + obsolete has growth temperature observation + true + + + + + + + + + obsolete has range temperature observation + true + + + + + + + + + obsolete has temperature delta observation + true + + + + + + + + + obsolete has culture temperature observation + true + + + + + + + + + + A relation between a microbe and a chemical entity indicating that the microbe's growth is not inhibited by the chemical at the concentration tested. Positive form of the chemical-tolerance pair; the negative form is METPO:2000065 'does not tolerate'. + tolerates + + + + + + + + + + A relation between a microbe and a chemical entity indicating that the microbe's growth is inhibited by the chemical at the concentration tested. Negative form of the chemical-tolerance pair; positive form is METPO:2000064 'tolerates'. Equivalent in meaning to 'is susceptible to' and 'is sensitive to'; the canonical label uses the 'does not X' convention so the metatraits pairing logic auto-detects it as the negative member. + does not tolerate + + + + + + + + + + A relation between a microbe and a quality of the host from which the microbe was isolated. Examples: a microbe isolated from a juvenile host has the relation `<microbe> METPO:2000067 PATO:0001190 'juvenile'`; a microbe isolated from a female host has the relation `<microbe> METPO:2000067 PATO:0000383 'female'`. The relation is one-directional: it asserts that the host bore the named quality at isolation time, not that the microbe itself has the quality. + isolated from host with quality + + + + + + + + + + A relation between a microbe and a quality of the environment from which the microbe was isolated. Examples: a microbe isolated from an acidic environment has the relation `<microbe> METPO:2000068 PATO:0001429 'acidic'`; a microbe isolated from an anaerobic environment has `<microbe> METPO:2000068 PATO:0001456 'anaerobic'`. The relation does not by itself entail that the microbe is acidophilic, anaerobic, etc. as a phenotype — it only records the environment's quality at the time of isolation. Microbe phenotype assertions belong on a separate edge (e.g. METPO:1000615 acidophilic via has_phenotype). + isolated from environment with quality + + + + + + + + + + has quality + + + + + + + + + + + has phenotype + + + + + + + + + + + capable of + + + + + + + + + + dismutates + disproportionates + + + + + dismutates + + + + + + + + + + obsolete lyses + true + + + + + + + + + produces + produces + + + + + produces + + + + + + + + + + obsolete fixes + true + + + + + + + + + obsolete catabolizes + true + + + + + + + + + obsolete mineralizes + true + + + + + + + + + obsolete conjugates + true + + + + + + + + + transports + + + + + + + + + + + imports + + + + + + + + + + + exports + + + + + + + + + accumulates + + + + + + + + + + + sequesters + + + + + + + + + + + compartmentalizes + + + + + + + + + obsolete binds + true + + + + + + + + + obsolete chelates + true + + + + + + + + + obsolete precipitates + true + + + + + + + + + obsolete solubilizes + true + + + + + + + + + obsolete volatilizes + true + + + + + + + + + obsolete crystallizes + true + + + + + + + + + obsolete adsorbs + true + + + + + + + + + dismutates + does not disproportionate + + + + + dismutates + + + + + + + + + + obsolete does not lyse + true + + + + + + + + + produces + does not produce + + + + + produces + + + + + + + + + + obsolete does not fix + true + + + + + + + + + obsolete does not catabolize + true + + + + + + + + + obsolete does not mineralize + true + + + + + + + + + obsolete does not conjugate + true + + + + + + + + + does not transport + + + + + + + + + + + does not import + + + + + + + + + + + does not export + + + + + + + + + does not accumulate + + + + + + + + + + + does not sequester + + + + + + + + + + + does not compartmentalize + + + + + + + + + obsolete does not bind + true + + + + + + + + + obsolete does not chelate + true + + + + + + + + + obsolete does not precipitate + true + + + + + + + + + obsolete does not solubilize + true + + + + + + + + + obsolete does not volatilize + true + + + + + + + + + obsolete does not crystallize + true + + + + + + + + + obsolete has pH observation + true + + + + + + + + + + Physiology and metabolism.enzymes.[].activity + enzyme activity analyzed + + + + + Physiology and metabolism.enzymes.[].activity + + + + + + + + + + + + Physiology and metabolism.enzymes.[].activity + shows activity of + + + + + Physiology and metabolism.enzymes.[].activity + + + + + + + + + + + + Physiology and metabolism.enzymes.[].activity + does not show activity of + + + + + Physiology and metabolism.enzymes.[].activity + + + + + + + + + + obsolete has optimum pH observation + true + + + + + + + + + obsolete has growth pH observation + true + + + + + + + + + obsolete has range pH observation + true + + + + + + + + + obsolete has pH delta observation + true + + + + + + + + + obsolete has culture pH observation + true + + + + + + + + + obsolete has NaCl observation + true + + + + + + + + + obsolete has optimum NaCl observation + true + + + + + + + + + obsolete has growth NaCl observation + true + + + + + + + + + obsolete has range NaCl observation + true + + + + + + + + + obsolete has NaCl delta observation + true + + + + + + + + + obsolete has observation + true + + + + + + + + + obsolete has oxygen observation + true + + + + + + + + + obsolete has optimum oxygen observation + true + + + + + + + + + obsolete has growth oxygen observation + true + + + + + + + + + obsolete has range oxygen observation + true + + + + + + + + + obsolete has oxygen delta observation + true + + + + + + + + + + A relation between a microbe and a growth medium indicating that the microbe has been demonstrated to grow in that medium under some set of conditions. This relation represents a generalization from experimental observations reported in the literature or databases; it does not imply that the microbe will grow in the medium under all conditions. + grows in + + + + + + + + + + A relation between a microbe and a growth medium indicating that the microbe has been demonstrated to fail to grow in that medium under some set of conditions. This relation represents a generalization from experimental observations reported in the literature or databases; it does not imply that the microbe cannot grow in the medium under any conditions. + does not grow in + + + + + + + + + denitrification + denitrifies + + + + + denitrification + + + + + + + + + + denitrification + does not denitrify + + + + + denitrification + + + + + + + + + + ammonification + ammonifies + + + + + ammonification + + + + + + + + + + ammonification + does not ammonify + + + + + ammonification + + + + + + + + + + oxidation in darkness + oxidizes in darkness + + + + + oxidation in darkness + + + + + + + + + + oxidation in darkness + does not oxidize in darkness + + + + + oxidation in darkness + + + + + + + + + + + + + + + obsolete has observed spot value + true + + + + + + + + + obsolete has minimum observed value + true + + + + + + + + + obsolete has maximum observed value + true + + + + + + + + + obsolete has value comments + true + + + + + + + + + obsolete is negative data + true + + + + + + + + + obsolete observation data property + true + + + + + + + + + Relates any instance to a numerical value + has value + + + + + + + + + + The growth temperature (Celsius) reported for this organism. + temperature growth + has growth temperature value + + + + + temperature growth + + + + + + + + + + + The minimum growth temperature (Celsius) reported for this organism. + temperature minimum + has minimum temperature value + + + + + temperature minimum + + + + + + + + + + + The maximum growth temperature (Celsius) reported for this organism. + temperature maximum + has maximum temperature value + + + + + temperature maximum + + + + + + + + + + + The growth pH reported for this organism. + pH growth + has growth pH value + + + + + pH growth + + + + + + + + + + + The minimum growth pH reported for this organism. + pH minimum + has minimum pH value + + + + + pH minimum + + + + + + + + + + + The maximum growth pH reported for this organism. + pH maximum + has maximum pH value + + + + + pH maximum + + + + + + + + + + + The growth salinity (% NaCl w/v) reported for this organism. + salinity growth + has growth salinity value + + + + + salinity growth + + + + + + + + + + + The minimum growth salinity (% NaCl w/v) reported for this organism. + salinity minimum + has minimum salinity value + + + + + salinity minimum + + + + + + + + + + + The maximum growth salinity (% NaCl w/v) reported for this organism. + salinity maximum + has maximum salinity value + + + + + salinity maximum + + + + + + + + + + + The genome size (bp) reported for this organism. + genome size + has genome size value + + + + + genome size + + + + + + + + + + + The estimated genome size (bp) reported for this organism. + estimated genome size + has estimated genome size value + + + + + estimated genome size + + + + + + + + + + + The gene count reported for this organism. + gene count + has gene count value + + + + + gene count + + + + + + + + + + + The estimated gene count reported for this organism. + estimated gene count + has estimated gene count value + + + + + estimated gene count + + + + + + + + + + + The GC content percentage reported for this organism. + GC percentage + has GC percentage value + + + + + GC percentage + + + + + + + + + + + The coding density percentage reported for this organism. + coding density + has coding density value + + + + + coding density + + + + + + + + + + + The cell length (micrometers) reported for this organism. + cell length + has cell length value + + + + + cell length + + + + + + + + + + + The cell width (micrometers) reported for this organism. + cell width + has cell width value + + + + + cell width + + + + + + + + + + + The minimum cell length (micrometers) reported for this organism. + cell length minimum + has minimum cell length value + + + + + cell length minimum + + + + + + + + + + + The maximum cell length (micrometers) reported for this organism. + cell length maximum + has maximum cell length value + + + + + cell length maximum + + + + + + + + + + + The minimum cell width (micrometers) reported for this organism. + cell width minimum + has minimum cell width value + + + + + cell width minimum + + + + + + + + + + + The maximum cell width (micrometers) reported for this organism. + cell width maximum + has maximum cell width value + + + + + cell width maximum + + + + + + + + + + + + A derived ecological or genomic metric computed from genome or community data. + has ecology metric value + + + + + + + + + + + The ecological generalism score for this organism, reflecting niche breadth. + generalism_score + has generalism score value + + + + + generalism_score + + + + + + + + + + + + The number of distinct habitats in which this organism has been observed. + habitat_count + has habitat count value + + + + + habitat_count + + + + + + + + + + + + The pangenome openness score for this organism, indicating the rate of new gene acquisition. + pangenome_openness + has pangenome openness value + + + + + pangenome_openness + + + + + + + + + + + + The intra-species nucleotide diversity percentage for this organism. + intra_species_nucleotide_diversity + has nucleotide diversity value + + + + + intra_species_nucleotide_diversity + + + + + + + + + + + + + + + + + + + + + + obsolete Temperature + true + + + + + + + + + + obsolete Salinity + true + + + + + + + + + + obsolete pH + true + + + + + + + + + + obsolete Oxygen + true + + + + + + + + + + obsolete Trophic type + true + + + + + + + + + + obsolete Motility + true + + + + + + + + + + obsolete Sporulation + true + + + + + + + + + + obsolete Pressure + true + + + + + + + + + + obsolete GC content + true + + + + + + + + + + obsolete Temperature + true + + + + + + + + + + obsolete Cell Width + true + + + + + + + + + + obsolete Cell Length + true + + + + + + + + + + obsolete Temperature Optimum + true + + + + + + + + + + obsolete Temperature Range + true + + + + + + + + + + obsolete pH Optimum + true + + + + + + + + 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obsolete Moderate halophile + true + + + + + + + + + + obsolete Extreme halophile + true + + + + + + + + + + obsolete Halotolerant + true + + + + + + + + + + obsolete Haloalkaliphile + true + + + + + + + + + + obsolete Extreme Acidophile + true + + + + + + + + + + obsolete Acidophile + true + + + + + + + + + + obsolete Neutrophile + true + + + + + + + + + + obsolete Oxygen + true + + + + + + + + + + obsolete Alkaliphile + true + + + + + + + + + + obsolete Acid Tolerant + true + + + + + + + + + + obsolete Alkali Tolerant + true + + + + + + + + + + obsolete Extreme Alkaliphile + true + + + + + + + + + + obsolete Facultative acidophile + true + + + + + + + + + + obsolete Obligative acidophile + true + + + + + + + + + + obsolete Aerobe + true + + + + + + + + + + obsolete Anaerobe + true + + + + + + + + + + obsolete Facultative anaerobe + true + + + + + + + + + + obsolete Facultative aerobe + true + + + + + + + + + + obsolete Trophic type + true + + + + + + + + + + obsolete Microaerophile + 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14 + 8 + + + + + pHO_8_to_14 + + + + + + + + + + + + + + + + + + + + 0 + + + 4 + + + + + + + + + + Acid Tolerant + Acidophile + Extreme Acidophile + Facultative acidophile + Obligative acidophile + pHR_0_to_4 + pH range very low + 4 + 0 + + + + + pHR_0_to_4 + + + + + + + + + + + + + + + + + + + + 4 + + + 6 + + + + + + + + + + Acid Tolerant + Acidophile + Facultative acidophile + Obligative acidophile + pHR_4_to_6 + pH range low + 6 + 4 + + + + + pHR_4_to_6 + + + + + + + + + + + + + + + + + + + + 6 + + + 7 + + + + + + + + + + Alkali Tolerant + Facultative acidophile + Neutrophile + pHR_6_to_7 + pH range mid1 + 7 + 6 + + + + + pHR_6_to_7 + + + + + + + + + + + + + + + + + + + + 7 + + + 8 + + + + + + + + + + Alkali Tolerant + Alkaliphile + Facultative acidophile + Neutrophile + pHR_7_to_8 + pH range mid2 + 8 + 7 + + + + + pHR_7_to_8 + + + + + + + + + + + + + + + + + + + + 8 + + + 10 + + + + + + + + + + Alkali Tolerant + Alkaliphile + Extreme Alkaliphile + Facultative acidophile + pHR_8_to_10 + pH range mid3 + 10 + 8 + + + + + pHR_8_to_10 + + + + + + + + + + + + + + + + + + + + 10 + + + 14 + + + + + + + + + + Alkali Tolerant + Alkaliphile + Extreme Alkaliphile + 10_to_14 + pH range high + 14 + 10 + + + + + 10_to_14 + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + + + + % + Halotolerant + Non-halophile + NaO_<=1 + NaCl optimum low + 1 + + + + + NaO_<=1 + + + + + + + + + + + + + + + + + + + + 1 + + + 3 + + + + + + + + + + % + Halotolerant + Slight halophile + NaO_1_to_3 + NaCl optimum mid1 + 3 + 1 + + + + + NaO_1_to_3 + + + + + + + + + + + + + + + + + + + + 3 + + + 8 + + + + + + + + + + % + Halotolerant + Moderate halophile + NaO_3_to_8 + NaCl optimum mid2 + 8 + 3 + + + + + NaO_3_to_8 + + + + + + + + + + + + + + + + + + + + 8 + + + + + + + + + + % + Extreme halophile + NaO_>8 + NaCl optimum high + 8 + + + + + NaO_>8 + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + + + + % + Halotolerant + Non-halophile + NaR_<=1 + NaCl range low + 1 + + + + + NaR_<=1 + + + + + + + + + + + + + + + + + + + + 1 + + + 3 + + + + + + + + + + % + Halotolerant + Slight halophile + NaR_1_to_3 + NaCl range mid1 + 3 + 1 + + + + + NaR_1_to_3 + + + + + + + + + + + + + + + + + + + + 3 + + + 8 + + + + + + + + + + % + Halotolerant + Moderate halophile + NaR_3_to_8 + NaCl range mid2 + 8 + 3 + + + + + NaR_3_to_8 + + + + + + + + + + + + + + + + + + + + 8 + + + + + + + + + + % + Extreme halophile + NaR_>8 + NaCl range high + 8 + + + + + NaR_>8 + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + + + + pHd_<=1 + pH delta very low + 1 + + + + + pHd_<=1 + + + + + + + + + + + + + + + + + + + + 1 + + + 2 + + + + + + + + + + pHd_1_2 + pH delta low + 2 + 1 + + + + + pHd_1_2 + + + + + + + + + + + + + + + + + + + + 2 + + + 3 + + + + + + + + + + pHd_2_3 + pH delta mid1 + 3 + 2 + + + + + pHd_2_3 + + + + + + + + + + + + + + + + + + + + 3 + + + 4 + + + + + + + + + + pHd_3_4 + pH delta mid2 + 4 + 3 + + + + + pHd_3_4 + + + + + + + + + + + + + + + + + + + + 4 + + + 5 + + + + + + + + + + pHd_4_5 + pH delta mid3 + 5 + 4 + + + + + pHd_4_5 + + + + + + + + + + + + + + + + + + + + 5 + + + 9 + + + + + + + + + + pHd_5_9 + pH delta high + 9 + 5 + + + + + pHd_5_9 + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + + + + % + Nad_<=1 + NaCl delta low + 1 + + + + + Nad_<=1 + + + + + + + + + + + + + + + + + + + + 1 + + + 3 + + + + + + + + + + % + Nad_1_3 + NaCl delta mid1 + 3 + 1 + + + + + Nad_1_3 + + + + + + + + + + + + + + + + + + + + 3 + + + 8 + + + + + + + + + + % + Nad_3_8 + NaCl delta mid2 + 8 + 3 + + + + + Nad_3_8 + + + + + + + + + + + + + + + + + + + + 8 + + + + + + + + + + % + Nad_>8 + NaCl delta high + 8 + + + + + Nad_>8 + + + + + + + + + + + + + + + + + + + + 1 + + + 5 + + + + + + + + + + Cel + Td_1_5 + temperature delta very low + 5 + 1 + + + + + Td_1_5 + + + + + + + + + + + + + + + + + + + + 5 + + + 10 + + + + + + + + + + Cel + Td_5_10 + temperature delta low + 10 + 5 + + + + + Td_5_10 + + + + + + + + + + + + + + + + + + + + 10 + + + 20 + + + + + + + + + + Cel + Td_10_20 + temperature delta mid1 + 20 + 10 + + + + + Td_10_20 + + + + + + + + + + + + + + + + + + + + 20 + + + 30 + + + + + + + + + + Cel + Td_20_30 + temperature delta mid2 + 30 + 20 + + + + + Td_20_30 + + + + + + + + + + + + + + + + + + + + 30 + + + + + + + + + + Cel + Td_>30 + temperature delta high + 30 + + + + + Td_>30 + + + + + + + + + + + obsolete branched + true + + + + + + + + + + obsolete coccobacillus + true + + + + + + + + + + obsolete crescent + true + + + + + + + + + + obsolete curved + true + + + + + + + + + + obsolete curved spiral + true + + + + + + + + + + obsolete diplococcus + true + + + + + + + + + + obsolete ellipsoidal + true + + + + + + + + + + obsolete filament + true + + + + + + + + + + obsolete fusiform + true + + + + + + + + + + obsolete helical + true + + + + + + + + + + obsolete irregular + true + + + + + + + + + + obsolete oval + true + + + + + + + + + + obsolete ovoid + true + + + + + + + + + + obsolete pleomorphic + true + + + + + + + + + + obsolete ring + true + + + + + + + + + + obsolete rod + true + + + + + + + + + + obsolete sphere + true + + + + + + + + + + obsolete spindle + true + + + + + + + + + + obsolete spiral + true + + + + + + + + + + obsolete star - dumbbell - pleomorphic + true + + + + + + + + + + obsolete tailed + true + + + + + + + + + + obsolete temperature adaptation + true + + + + + + + + + + obsolete salinity adaptation + true + + + + + + + + + + obsolete pH adaptation + true + + + + + + + + + + obsolete bacterial spore + true + + + + + + + + + + obsolete pressure adaptation type + true + + + + + + + + + + obsolete pressure tolerance range + true + + + + + + + + + + obsolete sensitivity to oxygen + true + + + + + + + + + + obsolete sensitivity toward + true + + + + + + + + + + obsolete size + true + + + + + + + + + + obsolete 1-D extent + true + + + + + + + + + + obsolete width + true + + + + + + + + + + obsolete length + true + + + + + + + + + + obsolete sensitivity toward pressure + true + + + + + + + + + + obsolete sensitivity toward nacl + true + + + + + + + + + + obsolete sensitivity toward ph + true + + + + + + + + + + obsolete sensitivity toward temperature + true + + + + + + + + + A material entity that is too small to be viewed by the unaided eye, typically requiring microscopy for observation. + Luke Wang + METPO is primarily concerned with unicellular, prokaryotic life forms, i.e. bacteria and archaea, including the cases of giant bacteria like Thiomargarita + microbe + + + + + + A material entity that is too small to be viewed by the unaided eye, typically requiring microscopy for observation. + + + + + + + + + + A material entity that is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances. + chemical entity + + + + + + A material entity that is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances. + + + + + + + + + + enzyme + + + + + + + + + + obsolete structured susceptibility detail + true + + + + + + + + + + obsolete facultative psychrophile + true + + + + + + + + + A phenotype characterized by specific pH values or ranges that define growth or activity limits. + pH phenotype with numerical limits + + + + + + + + + A phenotype characterized by specific salt concentration values or ranges that define growth or activity limits. + salinity phenotype with numerical limits + + + + + + + + + A phenotype characterized by specific temperature values or ranges that define growth or activity limits. + temperature phenotype with numerical limits + + + + + + + + + A phenotype characterized by the difference between maximum and minimum values of a growth parameter. + delta phenotype with numerical limits + + + + + + + + + A phenotype characterized by the span of values within which an organism can maintain growth. + growth range phenotype with numerical limits + + + + + + + + + A phenotype characterized by the value at which an organism exhibits maximum growth rate or activity. + optimum phenotype with numerical limits + + + + + + + + + A phenotype that is relating to an organism's oxygen requirements or tolerance for growth. + Physiology and metabolism.oxygen tolerance.oxygen tolerance + metabolism + oxygen preference + oxygen preference + + + + + A phenotype that is relating to an organism's oxygen requirements or tolerance for growth. + + + + + + + Physiology and metabolism.oxygen tolerance.oxygen tolerance + + + + + + metabolism + + + + + + oxygen preference + + + + + + + + + + An oxygen preference in which growth occurs in the presence of molecular oxygen (O₂), typically using O₂ as the terminal electron acceptor. + Ox_aerobic + aerobe + aerobic + aerobic + + + + + An oxygen preference in which growth occurs in the presence of molecular oxygen (O₂), typically using O₂ as the terminal electron acceptor. + + + + + + + Ox_aerobic + + + + + + aerobe + + + + + + aerobic + + + + + + + + + + An oxygen preference in which growth occurs in the absence of molecular oxygen (O₂). + Ox_anaerobic + anaerobe + anaerobic + anaerobic + + + + + An oxygen preference in which growth occurs in the absence of molecular oxygen (O₂). + + + + + + Ox_anaerobic + + + + + + anaerobe + + + + + + anaerobic + + + + + + + + + + An oxygen preference that requires molecular oxygen (O₂) at concentrations lower than atmospheric. + Ox_microerophile + microaerophile + microaerophilic + microaerophilic + + + + + An oxygen preference that requires molecular oxygen (O₂) at concentrations lower than atmospheric. + + + + + + + + Ox_microerophile + + + + + + microaerophile + + + + + + microaerophilic + + + + + + + + + + An oxygen preference in which growth can occur with or without molecular oxygen (O₂). + facultative + facultative anaerobe + facultatively anaerobic + + + + + An oxygen preference in which growth can occur with or without molecular oxygen (O₂). + + + + + + + facultative + + + + + + facultative anaerobe + + + + + + facultative anaerobe + + + + + + + + + + An oxygen preference that requires molecular oxygen (O₂) for growth. + obligate aerobe + obligate aerobic + obligately aerobic + + + + + An oxygen preference that requires molecular oxygen (O₂) for growth. + + + + + + obligate aerobe + + + + + + obligate aerobic + + + + + + obligate aerobic + + + + + + + + + + An oxygen preference in which molecular oxygen (O₂) inhibits or prevents growth. + obligate anaerobe + obligate anaerobic + obligately anaerobic + + + + + An oxygen preference in which molecular oxygen (O₂) inhibits or prevents growth. + + + + + + obligate anaerobe + + + + + + obligate anaerobic + + + + + + + + + + An oxygen preference in which growth can occur without oxygen but is capable of aerobic growth. + facultative + facultative aerobe + facultatively aerobic + + + + + An oxygen preference in which growth can occur without oxygen but is capable of aerobic growth. + + + + + + + facultative + + + + + + facultative aerobe + + + + + + + + + + An oxygen preference that does not use O₂ for growth but tolerates its presence. + aerotolerant + aerotolerant + + + + + An oxygen preference that does not use O₂ for growth but tolerates its presence. + + + + + + aerotolerant + + + + + + aerotolerant + + + + + + + + + + An oxygen preference that tolerates low levels of molecular oxygen (O₂) without requiring it. + microaerotolerant + microaerotolerant + + + + + An oxygen preference that tolerates low levels of molecular oxygen (O₂) without requiring it. + + + + + + + + + microaerotolerant + + + + + + + + + + An obligately anaerobic where a microorganism does not grow in the presence of oxygen gas (O2). + obligate anaerobic + strictly anaerobic + strictly anaerobic + + + + + An obligately anaerobic where a microorganism does not grow in the presence of oxygen gas (O2). + + + + + + obligate anaerobic + + + + + + strictly anaerobic + + + + + + + + + + An oxygen preference that describes a microorganism that can grow with or without molecular oxygen. + Ox_facultative_aerobe_anaerobe + facultative oxygen preference + + + + + An oxygen preference that describes a microorganism that can grow with or without molecular oxygen. + + + + + + Ox_facultative_aerobe_anaerobe + + + + + + + + + + A phenotype that describes characteristic growth with respect to environmental temperature. + Physiology and metabolism.culture temp.temperature + range_tmp + temperature preference + temperature preference + + + + + A phenotype that describes characteristic growth with respect to environmental temperature. + + + + + + Physiology and metabolism.culture temp.temperature + + + + + + range_tmp + + + + + + temperature preference + + + + + + + + + + A temperature preference in which growth is favored at low temperatures, typically near or below ~15 °C. + psychrophilic + psychrophilic + + + + + A temperature preference in which growth is favored at low temperatures, typically near or below ~15 °C. + + + + + + psychrophilic + + + + + + psychrophilic + + + + + + psychrophilic + + + + + + + + + + A temperature preference in which growth is favored at intermediate temperatures, typically ~20–45 °C. + mesophilic + mesophilic + + + + + A temperature preference in which growth is favored at intermediate temperatures, typically ~20–45 °C. + + + + + + mesophilic + + + + + + mesophilic + + + + + + + + + + A temperature preference in which growth is favored at elevated temperatures, typically ≥45 °C. + thermophilic + thermophilic + + + + + A temperature preference in which growth is favored at elevated temperatures, typically ≥45 °C. + + + + + + + + thermophilic + + + + + + thermophilic + + + + + + thermophilic + + + + + + + + + + A temperature preference in which growth is favored at very high temperatures, typically ≥80 °C. + extreme thermophilic + hyperthermophilic + hyperthermophilic + + + + + A temperature preference in which growth is favored at very high temperatures, typically ≥80 °C. + + + + + + extreme thermophilic + + + + + + hyperthermophilic + + + + + + + + + + A temperature preference in which growth can occur at low temperatures without an obligate low-temperature preference. + psychrotolerant + psychrotolerant + + + + + A temperature preference in which growth can occur at low temperatures without an obligate low-temperature preference. + + + + + + + + psychrotolerant + + + + + + + + + + A temperature preference in which growth can occur at elevated temperatures without an obligate high-temperature preference. + thermotolerant + thermotolerant + + + + + A temperature preference in which growth can occur at elevated temperatures without an obligate high-temperature preference. + + + + + + thermotolerant + + + + + + + + + + A halophily preference in which an organism requires high concentrations of salt for growth and survival. + halophilic + halophilic + + + + + A halophily preference in which an organism requires high concentrations of salt for growth and survival. + + + + + + + + + halophilic + + + + + + halophilic + + + + + + + + + + A halophily preference in which an organism requires both high salt concentrations and alkaline pH for optimal growth. + haloalkaliphilic + haloalkaliphilic + + + + + A halophily preference in which an organism requires both high salt concentrations and alkaline pH for optimal growth. + + + + + + + + + haloalkaliphilic + + + + + + + + + + A halophily preference in which an organism can tolerate high salt concentrations but does not require them for growth. + halotolerant + halotolerant + + + + + A halophily preference in which an organism can tolerate high salt concentrations but does not require them for growth. + + + + + + halotolerant + + + + + + halotolerant + + + + + + + + + + A halophily preference where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M. + Anthea Guo + moderate-halophilic + moderately halophilic + moderately halophilic + + + + + A halophily preference where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M. + + + + + + moderate-halophilic + + + + + + moderately halophilic + + + + + + + + + + A halophily preference in which an organism does not require or prefer elevated salt concentrations for growth. + non-halophilic + non halophilic + + + + + non-halophilic + + + + + + non-halophilic + + + + + + + + + + A halophily preference in which an organism requires low to moderate salt concentrations (0.3 to 0.8 M NaCl) for optimal growth. + slightly halophilic + slightly halophilic + + + + + A halophily preference in which an organism requires low to moderate salt concentrations (0.3 to 0.8 M NaCl) for optimal growth. + + + + + + slightly halophilic + + + + + + + + + + A halophily preference in which an organism can only tolerate a narrow range of salinity concentrations and cannot survive significant changes in environmental salt levels. + Jed Dongjin Kim-Ozaeta + Luke Wang + stenohaline + stenohaline + + + + + A halophily preference in which an organism can only tolerate a narrow range of salinity concentrations and cannot survive significant changes in environmental salt levels. + + + + + + stenohaline + + + + + + + + + + A halophily preference in which an organism can tolerate a wide range of salinity conditions. + euryhaline + euryhaline + + + + + euryhaline + + + + + + + + + + A halophily preference in which an organism requires very high salt concentrations (typically 15-30% NaCl or higher) for optimal growth and cannot grow at salt concentrations below approximately 12%. + Jed Dongjin Kim-Ozaeta + extreme-halophilic + extremely halophilic + extremely halophilic + + + + + A halophily preference in which an organism requires very high salt concentrations (typically 15-30% NaCl or higher) for optimal growth and cannot grow at salt concentrations below approximately 12%. + + + + + + + extreme-halophilic + + + + + + extremely halophilic + + + + + + + + + + A phenotype that is relating to an organism's salt concentration requirements or tolerance for growth. + Physiology and metabolism.halophily.halophily level + range_salinity + salinity preference + halophily preference + + + + + A phenotype that is relating to an organism's salt concentration requirements or tolerance for growth. + + + + + + + Physiology and metabolism.halophily.halophily level + + + + + + range_salinity + + + + + + salinity preference + + + + + + + + + A execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. + biological process + + + + + + + + + A phenotype that is describing how an organism obtains carbon and energy for growth and metabolism. + Luke Wang + Physiology and metabolism.nutrition type.type + nutritional type + pathways + trophic type + + + + + Physiology and metabolism.nutrition type.type + + + + + + pathways + + + + + + + + + + A trophic type in which an organism produces organic compounds from inorganic carbon sources (primarily carbon dioxide or bicarbonate) using energy from light (photoautotrophy) or from the oxidation of inorganic compounds (chemoautotrophy). + Jed Dongjin Kim-Ozaeta + TT_autotroph + autotroph + autotrophy + autotrophic + + + + + A trophic type in which an organism produces organic compounds from inorganic carbon sources (primarily carbon dioxide or bicarbonate) using energy from light (photoautotrophy) or from the oxidation of inorganic compounds (chemoautotrophy). + + + + + + + TT_autotroph + + + + + + autotroph + + + + + + autotrophy + + + + + + + + + + A trophic type in which an organism derives energy from the oxidation of carbon monoxide. + carboxydotrophic + + + + + + + + + A trophic type in which an organism uses chemical oxidation of inorganic compounds as the energy source and carbon dioxide as the primary carbon source for biosynthesis. + Luke Wang + chemoautolithotroph + chemoautolithotrophic + + + + + A trophic type in which an organism uses chemical oxidation of inorganic compounds as the energy source and carbon dioxide as the primary carbon source for biosynthesis. + + + + + + + + + + chemoautolithotroph + + + + + + + + + + A trophic type in which an organism obtains energy from oxidation of inorganic compounds and carbon from carbon dioxide. + chemoautotroph + chemoautotrophic + + + + + A trophic type in which an organism obtains energy from oxidation of inorganic compounds and carbon from carbon dioxide. + + + + + + + + + + chemoautotroph + + + + + + + + + + A trophic type in which an organism obtains both energy and carbon from organic compounds. + aerobic_chemo_heterotrophy + chemoheterotroph + chemoheterotrophic + + + + + A trophic type in which an organism obtains both energy and carbon from organic compounds. + + + + + + + + + + aerobic_chemo_heterotrophy + + + + + + chemoheterotroph + + + + + + + + + + A trophic type in which an organism obtains energy from oxidation of inorganic compounds (lithotrophy) and carbon from carbon dioxide. + chemolithoautotroph + chemolithoautotrophic + + + + + A trophic type in which an organism obtains energy from oxidation of inorganic compounds (lithotrophy) and carbon from carbon dioxide. + + + + + + chemolithoautotroph + + + + + + + + + + A trophic type characterized by the use of inorganic chemical compounds as electron donors for energy generation while utilizing organic compounds as the primary carbon source. + Anthea Guo + chemolithoheterotroph + chemolithoheterotrophic + + + + + A trophic type characterized by the use of inorganic chemical compounds as electron donors for energy generation while utilizing organic compounds as the primary carbon source. + + + + + + + chemolithoheterotroph + + + + + + + + + + A trophic type characterized by the use of inorganic chemical compounds as electron donors and carbon dioxide as the primary carbon source for energy generation and biosynthesis. + Anthea Guo + chemolithotroph + chemolithotrophic + + + + + A trophic type characterized by the use of inorganic chemical compounds as electron donors and carbon dioxide as the primary carbon source for energy generation and biosynthesis. + + + + + + + chemolithotroph + + + + + + + + + + A trophic type in which an organism obtains both energy and carbon from organic compounds through oxidation. + chemoorganoheterotroph + chemoorganoheterotrophic + + + + + A trophic type in which an organism obtains both energy and carbon from organic compounds through oxidation. + + + + + + + + + + chemoorganoheterotroph + + + + + + + + + + A trophic type in which an organism obtains energy from chemical oxidation of either inorganic or organic compounds. + TT_chemotroph + chemotroph + chemotrophic + + + + + A trophic type in which an organism obtains energy from chemical oxidation of either inorganic or organic compounds. + + + + + + TT_chemotroph + + + + + + chemotroph + + + + + + + + + + A nutrient adaptation in which an organism thrives in environments with high nutrient concentrations, typically exhibiting rapid growth rates and utilizing diverse carbon sources. + Jed Dongjin Kim-Ozaeta + copiotroph + copiotrophic + + + + + copiotroph + + + + + + + + + + + obsolete denitrifying + true + + + + + + + + + A trophic type in which an organism obtains carbon from organic compounds rather than from carbon dioxide. + TT_heterotroph + aerobic_heterotrophy + heterotroph + heterotrophic + heterotrophic + + + + + A trophic type in which an organism obtains carbon from organic compounds rather than from carbon dioxide. + + + + + + TT_heterotroph + + + + + + aerobic_heterotrophy + + + + + + heterotroph + + + + + + heterotrophic + + + + + + + + + + + obsolete hydrogen-oxidizing + true + + + + + + + + + A trophic type in which an organism uses molecular hydrogen as an electron donor for energy generation and carbon dioxide as the primary carbon source. + Jed Dongjin Kim-Ozaeta + Luke Wang + hydrogenotrophic + + + + + + + + + A trophic type in which an organism obtains energy from inorganic electron donors and carbon from carbon dioxide. + lithoautotroph + lithoautotrophic + + + + + A trophic type in which an organism obtains energy from inorganic electron donors and carbon from carbon dioxide. + + + + + + + + + + lithoautotroph + + + + + + + + + + A trophic type in which an organism obtains energy from the oxidation of inorganic compounds while using organic compounds as the primary carbon source for biosynthesis. + Jed Dongjin Kim-Ozaeta + lithoheterotroph + lithoheterotrophic + + + + + A trophic type in which an organism obtains energy from the oxidation of inorganic compounds while using organic compounds as the primary carbon source for biosynthesis. + + + + + + + + + + lithoheterotroph + + + + + + + + + + A trophic type in which an organism uses inorganic compounds as electron donors for energy generation. + Luke Wang + TT_lithotroph + lithotroph + lithotrophic + + + + + A trophic type in which an organism uses inorganic compounds as electron donors for energy generation. + + + + + + TT_lithotroph + + + + + + lithotroph + + + + + + + + + + A trophic type in which an organism uses methane as the primary carbon and energy source through oxidation of methane to carbon dioxide. + Luke Wang + methanotroph + methanotrophic + + + + + methanotroph + + + + + + + + + + A trophic type in which an organism obtains energy and carbon from reduced one-carbon compounds. + TT_methylotroph + methylotroph + methylotrophy + methylotrophic + + + + + TT_methylotroph + + + + + + methylotroph + + + + + + methylotrophy + + + + + + + + + + A trophic type in which an organism can use both organic and inorganic carbon sources for growth. + mixotroph + mixotrophic + + + + + A trophic type in which an organism can use both organic and inorganic carbon sources for growth. + + + + + + mixotroph + + + + + + + + + + + obsolete nitrogen-fixing + true + + + + + + + + + A nutrient adaptation characterized by the ability to thrive in environments with very low nutrient concentrations, typically possessing efficient nutrient uptake and utilization systems. + Anthea Guo + Jed Dongjin Kim-Ozaeta + TT_oligotroph + oligotroph + oligotrophic + + + + + A nutrient adaptation characterized by the ability to thrive in environments with very low nutrient concentrations, typically possessing efficient nutrient uptake and utilization systems. + + + + + + + TT_oligotroph + + + + + + oligotroph + + + + + + + + + + A trophic type in which an organism obtains energy from the oxidation of organic compounds. + TT_organotroph + organotroph + organotrophic + + + + + A trophic type in which an organism obtains energy from the oxidation of organic compounds. + + + + + + + TT_organotroph + + + + + + organotroph + + + + + + + + + + A trophic type characterized by the use of light as the energy source and carbon dioxide as the primary carbon source for biosynthesis. + Anthea Guo + anoxygenic_photoautotrophy + anoxygenic_photoautotrophy_hydrogen_oxidation + anoxygenic_photoautotrophy_iron_oxidation + anoxygenic_photoautotrophy_sulfur_oxidation + photoautotroph + photoautotrophy + photoautotrophic + + + + + A trophic type characterized by the use of light as the energy source and carbon dioxide as the primary carbon source for biosynthesis. + + + + + + + + + + anoxygenic_photoautotrophy + + + + + + anoxygenic_photoautotrophy_hydrogen_oxidation + + + + + + anoxygenic_photoautotrophy_iron_oxidation + + + + + + anoxygenic_photoautotrophy_sulfur_oxidation + + + + + + photoautotroph + + + + + + photoautotrophy + + + + + + + + + + A trophic type in which an organism uses light as the energy source and organic compounds as the primary carbon source for biosynthesis. + Luke Wang + photoheterotroph + photoheterotrophy + photoheterotrophic + + + + + A trophic type in which an organism uses light as the energy source and organic compounds as the primary carbon source for biosynthesis. + + + + + + photoheterotroph + + + + + + photoheterotrophy + + + + + + + + + + A trophic type in which an organism uses light as the energy source and inorganic compounds as electron donors, typically with carbon dioxide as the primary carbon source. + Jed Dongjin Kim-Ozaeta + Luke Wang + photolithotroph + photolithotrophic + + + + + A trophic type in which an organism uses light as the energy source and inorganic compounds as electron donors, typically with carbon dioxide as the primary carbon source. + + + + + + photolithotroph + + + + + + + + + + A trophic type in which an organism obtains energy from light and carbon from organic compounds. + photoorganoheterotroph + photoorganoheterotrophic + + + + + A trophic type in which an organism obtains energy from light and carbon from organic compounds. + + + + + + photoorganoheterotroph + + + + + + + + + + A trophic type characterized by the use of light as the primary energy source for metabolic processes, regardless of carbon source. + Anthea Guo + TT_phototroph + aerobic_anoxygenic_phototrophy + phototroph + phototrophic + + + + + A trophic type characterized by the use of light as the primary energy source for metabolic processes, regardless of carbon source. + + + + + + + TT_phototroph + + + + + + aerobic_anoxygenic_phototrophy + + + + + + phototroph + + + + + + + + + + + obsolete sulfate-reducing + true + + + + + + + + + + obsolete sulfur-oxidizing + true + + + + + + + + + A trophic type in which an organism obtains energy through chemical oxidation of organic compounds that also serve as the carbon source for biosynthesis. + Jed Dongjin Kim-Ozaeta + chemoorganotroph + chemoorganotrophic + + + + + A trophic type in which an organism obtains energy through chemical oxidation of organic compounds that also serve as the carbon source for biosynthesis. + + + + + + chemoorganotroph + + + + + + + + + + A trophic type characterized by the use of organic compounds as both electron donors and primary carbon sources for energy generation and biosynthesis. + Anthea Guo + organoheterotroph + organoheterotrophic + + + + + A trophic type characterized by the use of organic compounds as both electron donors and primary carbon sources for energy generation and biosynthesis. + + + + + + + + + + organoheterotroph + + + + + + + + + + A trophic type in which an organism obtains energy from light and carbon from carbon dioxide using inorganic electron donors. + photolithoautotroph + photolithoautotrophic + + + + + A trophic type in which an organism obtains energy from light and carbon from carbon dioxide using inorganic electron donors. + + + + + + photolithoautotroph + + + + + + + + + + A phenotype that describes the characteristic three-dimensional morphological form of a microbial cell, determined by cell wall structure, cytoskeletal elements, and environmental factors. + Jed Dongjin Kim-Ozaeta + Luke Wang + Morphology.cell morphology.cell shape + cell shape + cell_shape + cell shape + + + + + A phenotype that describes the characteristic three-dimensional morphological form of a microbial cell, determined by cell wall structure, cytoskeletal elements, and environmental factors. + + + + + + Morphology.cell morphology.cell shape + + + + + + cell shape + + + + + + cell_shape + + + + + + + + + + A cell shape characterized by an elongated, rod cylindrical morphology with relatively parallel sides and rounded ends. + Anthea Guo + bacillus + bacillus shaped + + + + + A cell shape characterized by an elongated, rod cylindrical morphology with relatively parallel sides and rounded ends. + + + + + + bacillus + + + + + + + + + + A cell shape in which an organism has a spherical or nearly spherical morphology, with roughly equal dimensions in all directions. + Jed Dongjin Kim-Ozaeta + coccus + coccus-shaped + coccus shaped + + + + + A cell shape in which an organism has a spherical or nearly spherical morphology, with roughly equal dimensions in all directions. + + + + + + + + coccus + + + + + + coccus-shaped + + + + + + + + + + Luke Wang + crescent-shaped + crescent shaped + + + + + crescent-shaped + + + + + + + + + + Anthea Guo + S_curved_spiral + curved-shaped + curved shaped + + + + + S_curved_spiral + + + + + + curved-shaped + + + + + + + + + + A cell shape in which spherical cells remain attached in pairs following cell division, forming characteristic doublets. + Luke Wang + diplococcus-shaped + diplococcus shaped + + + + + A cell shape in which spherical cells remain attached in pairs following cell division, forming characteristic doublets. + + + + + + diplococcus-shaped + + + + + + + + + + S_star_dumbbell_pleomorphic + dumbbell-shaped + dumbbell shaped + + + + + S_star_dumbbell_pleomorphic + + + + + + dumbbell-shaped + + + + + + + + + + A cell shape in which an organism has an oval or ellipse morphology, elongated along one axis with rounded ends, intermediate between spherical and rod-shaped. + Jed Dongjin Kim-Ozaeta + Luke Wang + ellipsoidal + ellipsoidal + + + + + A cell shape in which an organism has an oval or ellipse morphology, elongated along one axis with rounded ends, intermediate between spherical and rod-shaped. + + + + + + ellipsoidal + + + + + + + + + + Luke Wang + S_filament + filament + filament-shaped + filament shaped + + + + + S_filament + + + + + + filament + + + + + + filament-shaped + + + + + + + + + + flask + flask-shaped + flask shaped + + + + + flask + + + + + + flask-shaped + + + + + + + + + + Anthea Guo + Jed Dongjin Kim-Ozaeta + helical-shaped + helical shaped + + + + + helical-shaped + + + + + + + + + + A cell shape in which an organism has an oval morphology, rounded at both ends with one end often slightly broader than the other. + Luke Wang + S_ovoid + ovoid-shaped + ovoid shaped + + + + + A cell shape in which an organism has an oval morphology, rounded at both ends with one end often slightly broader than the other. + + + + + + S_ovoid + + + + + + ovoid-shaped + + + + + + + + + + A cell shape characterized by an ellipsoidal morphology with rounded ends, resembling an elongated sphere. + Anthea Guo + oval-shaped + oval shaped + + + + + A cell shape characterized by an ellipsoidal morphology with rounded ends, resembling an elongated sphere. + + + + + + oval-shaped + + + + + + + + + + A cell shape characterized by variable and irregular morphology, where individual cells within a population exhibit multiple distinct shapes. + Anthea Guo + Jed Dongjin Kim-Ozaeta + S_star_dumbbell_pleomorphic + pleomorphic + pleomorphic-shaped + pleomorphic shaped + + + + + A cell shape characterized by variable and irregular morphology, where individual cells within a population exhibit multiple distinct shapes. + + + + + + S_star_dumbbell_pleomorphic + + + + + + pleomorphic + + + + + + pleomorphic-shaped + + + + + + + + + + A cell shape in which an organism forms circular or toroidal structures. + ring + ring-shaped + ring shaped + + + + + A cell shape in which an organism forms circular or toroidal structures. + + + + + + ring + + + + + + ring-shaped + + + + + + + + + + A cell shape in which an organism has an elongated, cylindrical morphology with relatively straight sides and rounded or flat ends. + Luke Wang + S_rod + rod-shaped + rod shaped + + + + + A cell shape in which an organism has an elongated, cylindrical morphology with relatively straight sides and rounded or flat ends. + + + + + + S_rod + + + + + + rod-shaped + + + + + + + + + + Anthea Guo + spore-shaped + spore shaped + + + + + spore-shaped + + + + + + + + + + Anthea Guo + S_sphere + sphere-shaped + sphere shaped + + + + + S_sphere + + + + + + sphere-shaped + + + + + + + + + + Luke Wang + S_curved_spiral + spiral + spiral-shaped + spiral shaped + + + + + S_curved_spiral + + + + + + spiral + + + + + + spiral-shaped + + + + + + + + + + A cell shape in which an organism has multiple radiating projections from a central body. + S_star_dumbbell_pleomorphic + star + star-shaped + star shaped + + + + + A cell shape in which an organism has multiple radiating projections from a central body. + + + + + + + S_star_dumbbell_pleomorphic + + + + + + star + + + + + + star-shaped + + + + + + + + + + A cell shape in which an organism has a curved rod or comma morphology, characterized by a short curved cylindrical form with a single arc. + Jed Dongjin Kim-Ozaeta + vibrio + vibrio-shaped + vibrio shaped + + + + + A cell shape in which an organism has a curved rod or comma morphology, characterized by a short curved cylindrical form with a single arc. + + + + + + + vibrio + + + + + + vibrio-shaped + + + + + + + + + + branced + branched shaped + + + + + branced + + + + + + + + + + coccobacillus + coccobacillus shaped + + + + + coccobacillus + + + + + + + + + + A cell shape in which an organism is flat and circular. + disc + disc shaped + + + + + disc + + + + + + + + + + A cell shape that is wide in the middle and tapers at both ends. + fusiform + fusiform shaped + + + + + A cell shape that is wide in the middle and tapers at both ends. + + + + + + fusiform + + + + + + + + + + irregular + irregular shaped + + + + + irregular + + + + + + + + + + Anthea Guo + spindle + spindle shaped + + + + + spindle + + + + + + + + + + A cell shape in which an organism has an elongated, tightly coiled helical morphology with periplasmic flagella (endoflagella) located between the cell wall and outer membrane. + Jed Dongjin Kim-Ozaeta + spirochete + spirochete shaped + + + + + A cell shape in which an organism has an elongated, tightly coiled helical morphology with periplasmic flagella (endoflagella) located between the cell wall and outer membrane. + + + + + + + + spirochete + + + + + + + + + + square + square shaped + + + + + square + + + + + + + + + + tailed + tailed shaped + + + + + tailed + + + + + + + + + + triangular + triangular shaped + + + + + triangular + + + + + + + + + + A phenotype where microorganisms are grouped based on their ability to retain crystal violet dye in the Gram staining procedure. + Jed Dongjin Kim-Ozaeta + Luke Wang + Morphology.cell morphology.gram stain + gram_stain + gram stain + + + + + A phenotype where microorganisms are grouped based on their ability to retain crystal violet dye in the Gram staining procedure. + + + + + + Morphology.cell morphology.gram stain + + + + + + gram_stain + + + + + + + + + + A gram stain in which an organism retains crystal violet dye and appears purple under microscopy due to a thick peptidoglycan cell wall. + G_positive + gram positive + positive + gram positive + + + + + A gram stain in which an organism retains crystal violet dye and appears purple under microscopy due to a thick peptidoglycan cell wall. + + + + + + + G_positive + + + + + + gram positive + + + + + + positive + + + + + + positive + + + + + + + + + + A gram stain in which bacteria do not retain crystal violet dye and appear pink or red after staining, indicating a thin peptidoglycan layer and presence of an outer membrane. + Luke Wang + G_negative + gram negative + negative + gram negative + + + + + G_negative + + + + + + gram negative + + + + + + negative + + + + + + negative + + + + + + + + + + A gram stain in which bacteria from the same culture show both gram-positive and gram-negative staining characteristics, often due to age of culture or cell wall degradation. + Luke Wang + variable + gram variable + + + + + A gram stain in which bacteria from the same culture show both gram-positive and gram-negative staining characteristics, often due to age of culture or cell wall degradation. + + + + + + variable + + + + + + + + + + A phenotype in which an organism has the capability to move independently through its environment, typically by means of flagella, pili, gliding mechanisms, or other locomotory structures. + Jed Dongjin Kim-Ozaeta + Morphology.cell morphology.motility + motility + presence of motility + motility + + + + + A phenotype in which an organism has the capability to move independently through its environment, typically by means of flagella, pili, gliding mechanisms, or other locomotory structures. + + + + + + Morphology.cell morphology.motility + + + + + + motility + + + + + + presence of motility + + + + + + + + + + A motility in which an organism has the ability to move independently using metabolic energy. + motile + yes + motile + + + + + A motility in which an organism has the ability to move independently using metabolic energy. + + + + + + + motile + + + + + + yes + + + + + + yes + + + + + + + + + + A motility in which an organism lacks the ability to move independently under its own power. + no + non-motile + non motile + + + + + A motility in which an organism lacks the ability to move independently under its own power. + + + + + + + + + + no + + + + + + no + + + + + + non-motile + + + + + + + + + + A motile in which an organism possesses flagella for locomotion. + flagella + flagellated + + + + + A motile in which an organism possesses flagella for locomotion. + + + + + + + + + flagella + + + + + + + + + + A motile in which the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope. + Luke Wang + axial filament + axially filamented + + + + + A motile in which the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope. + + + + + + + axial filament + + + + + + + + + + A motile in which an organism moves smoothly along solid surfaces without flagella or pili. + gliding + gliding + + + + + A motile in which an organism moves smoothly along solid surfaces without flagella or pili. + + + + + + + + gliding + + + + + + + + + + A temperature preference characterized by the ability to grow at low temperatures (typically below 20°C) while maintaining optimal growth at moderate temperatures. + Anthea Guo + facultative psychrophile + facultative psychrophilic + facultative psychrophilic + + + + + A temperature preference characterized by the ability to grow at low temperatures (typically below 20°C) while maintaining optimal growth at moderate temperatures. + + + + + + + + facultative psychrophilic + + + + + + + + + + A temperature preference that grows optimally at temperatures above 90°C. + extreme hyperthermophile + extremely hyperthermophilic + extreme hyperthermophilic + + + + + A temperature preference that grows optimally at temperatures above 90°C. + + + + + + + + + + + + + A trophic type that involves an organism's physiological and metabolic adaptations to specific nutrient availability. + Luke Wang + nutrient adaptation + + + + + A trophic type that involves an organism's physiological and metabolic adaptations to specific nutrient availability. + + + + + + + + + + A metabolism that is characterized by the method of performing cellular respiration, distinguished primarily by the specific terminal electron acceptor utilized for producing cellular energy. + Anthea Guo + pathways + respiration + respiration + + + + + A metabolism that is characterized by the method of performing cellular respiration, distinguished primarily by the specific terminal electron acceptor utilized for producing cellular energy. + + + + + + + pathways + + + + + + respiration + + + + + + + + + + A respiration in which molecular oxygen serves as the terminal electron acceptor in the electron transport chain, generating ATP through oxidative phosphorylation with water as the final product. + Jed Dongjin Kim-Ozaeta + Oxic respiration + Oxygen respiration + Aerobic respiration + + + + + A respiration in which molecular oxygen serves as the terminal electron acceptor in the electron transport chain, generating ATP through oxidative phosphorylation with water as the final product. + + + + + + + + + + A respiration in which an organism uses electron acceptors other than oxygen for energy production. + Anoxic respiration + Dissimilatory respiration (non-O₂) + Anaerobic respiration + + + + + A respiration in which an organism uses electron acceptors other than oxygen for energy production. + + + + + + + + + + A metabolism that generates ATP through the transfer of electrons from electron donors to electron acceptors via redox reactions, coupled to the pumping of protons across a membrane to create an electrochemical gradient. + Anthea Guo + Oxidative phosphorylation + + + + + A metabolism that generates ATP through the transfer of electrons from electron donors to electron acceptors via redox reactions, coupled to the pumping of protons across a membrane to create an electrochemical gradient. + + + + + + + + + + A metabolism in which ATP is formed directly by transfer of a phosphoryl group from a substrate to ADP. + Substrate-level phosphorylation + + + + + + + + + A metabolism in which electrons are transferred from an electron donor to an electron acceptor. + Jed Dongjin Kim-Ozaeta + Electron transfer + + + + + A metabolism in which electrons are transferred from an electron donor to an electron acceptor. + + + + + + + + + + A metabolism in which a single substrate simultaneously undergoes both oxidation and reduction reactions, with part of the substrate serving as the electron donor and another part serving as the electron acceptor. + Jed Dongjin Kim-Ozaeta + Disproportionation + + + + + + + + + + obsolete Nitrogen compound respiration + true + + + + + + + + + + obsolete Nitrate reduction + true + + + + + + + + + + obsolete Denitrification + true + + + + + + + + + + obsolete Dissimilatory nitrate reduction to ammonium + true + + + + + + + + + + obsolete Nitrite reduction + true + + + + + + + + + + obsolete Anaerobic ammonium oxidation + true + + + + + + + + + + obsolete Nitric oxide reduction + true + + + + + + + + + + obsolete Nitrous oxide reduction + true + + + + + + + + + + obsolete Sulfur and sulfoxide compound respiration + true + + + + + + + + + + obsolete Sulfate reduction + true + + + + + + + + + + obsolete Sulfur reduction + true + + + + + + + + + + obsolete Sulfite reduction + true + + + + + + + + + + obsolete Thiosulfate reduction + true + + + + + + + + + + obsolete Sulfoxide respiration + true + + + + + + + + + + obsolete Dimethyl sulfoxide respiration + true + + + + + + + + + + obsolete Methionine sulfoxide respiration + true + + + + + + + + + + obsolete Sulfide oxidation + true + + + + + + + + + + obsolete Thiosulfate oxidation + true + + + + + + + + + + obsolete Sulfite oxidation + true + + + + + + + + + + obsolete Tetrathionate reduction + true + + + + + + + + + + obsolete Polysulfide reduction + true + + + + + + + + + + obsolete Metal and metalloid respiration + true + + + + + + + + + + obsolete Iron reduction + true + + + + + + + + + + obsolete Iron oxidation + true + + + + + + + + + + obsolete Nitrate-dependent Fe(II) oxidation + true + + + + + + + + + + obsolete Manganese reduction + true + + + + + + + + + + obsolete Manganese oxidation + true + + + + + + + + + + obsolete Uranium reduction + true + + + + + + + + + + obsolete Vanadium reduction + true + + + + + + + + + + obsolete Chromium reduction + true + + + + + + + + + + obsolete Technetium reduction + true + + + + + + + + + + obsolete Cobalt reduction + true + + + + + + + + + + obsolete Arsenate reduction + true + + + + + + + + + + obsolete Arsenite oxidation + true + + + + + + + + + + obsolete Selenate reduction + true + + + + + + + + + + obsolete Selenite reduction + true + + + + + + + + + + obsolete Carbon and organic compound respiration + true + + + + + + + + + A metabolism in which methane is produced as the primary end product through the reduction of carbon-containing compounds, formate, methanol, or acetate, exclusively performed by methanogenic archaea under strictly anaerobic conditions. + Jed Dongjin Kim-Ozaeta + Luke Wang + Biological methanation + Biomethanation + Carbonate respiration + methanogenesis + Methanogenesis + + + + + A metabolism in which methane is produced as the primary end product through the reduction of carbon-containing compounds, formate, methanol, or acetate, exclusively performed by methanogenic archaea under strictly anaerobic conditions. + + + + + + methanogenesis + + + + + + + + + + A metabolism that produces acetate as the primary end product through the reduction of carbon dioxide or other carbon compounds using the Wood-Ljungdahl pathway, typically performed by acetogenic bacteria under anaerobic conditions. + Anthea Guo + Jed Dongjin Kim-Ozaeta + Acetate fermentation + acetogenesis + Acetogenesis + + + + + acetogenesis + + + + + + + + + + A metabolism in which acetate is produced as the sole reduced end product from reduction of CO2 via the acetyl-CoA pathway. + Reductive acetyl-CoA pathway + Wood-Ljungdahl pathway + Homoacetogenesis + + + + + + + + + + obsolete Fumarate respiration + true + + + + + + + + + + obsolete Trimethylamine N-oxide respiration + true + + + + + + + + + + obsolete Humus respiration + true + + + + + + + + + + obsolete Halogenated compound respiration + true + + + + + + + + + + obsolete Organohalide respiration + true + + + + + + + + + + obsolete (Per)chlorate respiration + true + + + + + + + + + + obsolete Perchlorate respiration + true + + + + + + + + + + obsolete Chlorate respiration + true + + + + + + + + + + obsolete Bromate reduction + true + + + + + + + + + + obsolete Iodate reduction + true + + + + + + + + + + obsolete Nitrite-dependent methane oxidation + true + + + + + + + + + + obsolete Nitrate-dependent methane oxidation + true + + + + + + + + + + obsolete Hydrogen oxidation + true + + + + + + + + + + obsolete Sulfur oxidation + true + + + + + + + + + + obsolete Nitrification + true + + + + + + + + + + obsolete Complete ammonia oxidation + true + + + + + + + + + + obsolete Carbon monoxide oxidation + true + + + + + + + + + + obsolete Hydrogenotrophic methanogenesis + true + + + + + + + + + + obsolete Acetoclastic methanogenesis + true + + + + + + + + + + obsolete Methylotrophic methanogenesis + true + + + + + + + + + + obsolete Anaerobic methane oxidation + true + + + + + + + + + + obsolete Lanthanide reduction + true + + + + + + + + + + obsolete Lanthanide oxidation + true + + + + + + + + + A phenotype that is relating to an organism's ability to form dormant, stress-resistant endospores. + General.keywords + Physiology and metabolism.spore formation.spore formation + sporulation + sporulation + + + + + A phenotype that is relating to an organism's ability to form dormant, stress-resistant endospores. + + + + + + General.keywords + + + + + + Physiology and metabolism.spore formation.spore formation + + + + + + sporulation + + + + + + sporulation + + + + + + + + + + A sporulation in which an organism has the ability to produce endospores. + spore + yes + spore forming + + + + + A sporulation in which an organism has the ability to produce endospores. + + + + + + + + spore + + + + + + yes + + + + + + yes + + + + + + + + + + A sporulation in which an organism lacks the ability to produce endospores. + no + no_spore + non-spore forming + + + + + A sporulation in which an organism lacks the ability to produce endospores. + + + + + + + + + + no + + + + + + no + + + + + + no_spore + + + + + + + + + + A phenotype that inheres in a cell by virtue of its longer dimension when viewed on a plane. + cell length + cell length + + + + + A phenotype that inheres in a cell by virtue of its longer dimension when viewed on a plane. + + + + + + cell length + + + + + + + + + + A phenotype that inheres in a cell by virtue of its shorter dimension when viewed on a plane. + cell width + cell width + + + + + A phenotype that inheres in a cell by virtue of its shorter dimension when viewed on a plane. + + + + + + cell width + + + + + + + + + + + + + + + + + + + + 1.3 + + + + + + + + + + um + L_<=1.3 + cell length very small + 1.3 + + + + + L_<=1.3 + + + + + + + + + + + + + + + + + + + + 1.3 + + + 2 + + + + + + + + + + um + L_1.3_2 + cell length small + 2 + 1.3 + + + + + L_1.3_2 + + + + + + + + + + + + + + + + + + + + 2 + + + 3 + + + + + + + + + + um + L_2_3 + cell length medium + 3 + 2 + + + + + L_2_3 + + + + + + + + + + + + + + + + + + + + 3 + + + + + + + + + + um + L_>3 + cell length large + 3 + + + + + L_>3 + + + + + + + + + + + + + + + + + + + + 0.5 + + + + + + + + + + um + W_<=0.5 + cell width very small + 0.5 + + + + + W_<=0.5 + + + + + + + + + + + + + + + + + + + + 0.5 + + + 0.65 + + + + + + + + + + um + W_0.5_0.65 + cell width small + 0.65 + 0.5 + + + + + W_0.5_0.65 + + + + + + + + + + + + + + + + + + + + 0.65 + + + 0.9 + + + + + + + + + + um + W_0.65_0.9 + cell width medium + 0.9 + 0.65 + + + + + W_0.65_0.9 + + + + + + + + + + + + + + + + + + + + 0.9 + + + + + + + + + + um + W_>0.9 + cell width large + 0.9 + + + + + W_>0.9 + + + + + + + + + + + obsolete observation + true + + + + + + + + + + obsolete optimum temperature observation + true + + + + + + + + + + obsolete growth temperature observation + true + + + + + + + + + + obsolete temperature range observation + true + + + + + + + + + + obsolete temperature delta observation + true + + + + + + + + + + obsolete culture temperature observation + true + + + + + + + + + + obsolete culture NaCl observation + true + + + + + + + + + + obsolete growth NaCl observation + true + + + + + + + + + + obsolete NaCl delta observation + true + + + + + + + + + + obsolete NaCl range observation + true + + + + + + + + + + obsolete optimum NaCl observation + true + + + + + + + + + + obsolete culture pH observation + true + + + + + + + + + + obsolete growth pH observation + true + + + + + + + + + + obsolete optimum pH observation + true + + + + + + + + + + obsolete pH delta observation + true + + + + + + + + + + obsolete pH range observation + true + + + + + + + + + + obsolete optimum oxygen observation + true + + + + + + + + + + obsolete growth oxygen observation + true + + + + + + + + + + obsolete oxygen range observation + true + + + + + + + + + + obsolete oxygen delta observation + true + + + + + + + + + + obsolete oxygen observation + true + + + + + + + + + + obsolete temperature observation + true + + + + + + + + + + obsolete NaCl observation + true + + + + + + + + + + obsolete pH observation + true + + + + + + + + + A quality that categorizes biological agents according to their hazard level and required containment measures. + Safety information.risk assessment.biosafety level + biosafety level + biosafety level + + + + + Safety information.risk assessment.biosafety level + + + + + + biosafety level + + + + + + + + + + A biosafety level that pose minimal potential hazard to laboratory workers and the environment, requiring only standard microbiological practices. + Anthea Guo + 1 + biosafety level 1 + + + + + 1 + + + + + + + + + + A biosafety level that pose moderate risk and are associated with human diseases present in the community. + 2 + biosafety level 2 + + + + + 2 + + + + + + + + + + A biosafety level that can cause serious or potentially lethal disease through inhalation or other routes, requiring specialized containment facilities with controlled access, directional airflow, and strict safety protocols. + Jed Dongjin Kim-Ozaeta + 3 + 3** + biosafety level 3 + + + + + 3 + + + + + + 3** + + + + + + + + + + A biosafety level that pose extreme risk of life-threatening disease through aerosol transmission with no available treatment. + 4 + biosafety level 4 + + + + + 4 + + + + + + + + + + A biosafety level that is proposed as a classification beyond BSL-4 for hypothetical biological agents requiring enhanced containment. + 5 + biosafety level 5 + + + + + 5 + + + + + + + + + + + obsolete Sulfate-dependent methane oxidation + true + + + + + + + + + + obsolete Fe(III)-dependent methane oxidation + true + + + + + + + + + + obsolete Mn(IV)-dependent methane oxidation + true + + + + + + + + + A metabolism in which electrons are transferred over centimeter-scale distances through multicellular filaments. + Cable bacteria metabolism + + + + + + + + + A respiration that generates energy through the oxidation of organic compounds without using an external electron acceptor, using organic molecules as both electron donors and final electron acceptors. + Luke Wang + fermentation + Fermentation + + + + + A respiration that generates energy through the oxidation of organic compounds without using an external electron acceptor, using organic molecules as both electron donors and final electron acceptors. + + + + + + fermentation + + + + + + fermentation + + + + + + + + + + A metabolism in which the metabolism of one species is thermodynamically dependent on the removal of its products by another species. + Jed Dongjin Kim-Ozaeta + Syntrophy + + + + + + + + + + obsolete Sulfur disproportionation + true + + + + + + + + + + obsolete Nitrogen fixation + true + + + + + + + + + + obsolete Nitrate-reducing + true + + + + + + + + + + obsolete Anaerobic ammonium-oxidizing + true + + + + + + + + + + obsolete Nitrous oxide-reducing + true + + + + + + + + + + obsolete Sulfate-reducing + true + + + + + + + + + + obsolete Sulfur-reducing + true + + + + + + + + + + obsolete Sulfite-reducing + true + + + + + + + + + + obsolete Thiosulfate-reducing + true + + + + + + + + + + obsolete Sulfur-disproportionating + true + + + + + + + + + + obsolete Sulfide-oxidizing + true + + + + + + + + + + obsolete Thiosulfate-oxidizing + true + + + + + + + + + + obsolete Sulfite-oxidizing + true + + + + + + + + + + obsolete Iron-reducing + true + + + + + + + + + + obsolete Iron-oxidizing + true + + + + + + + + + + obsolete Nitrate-dependent Fe(II)-oxidizing + true + + + + + + + + + + obsolete Manganese-reducing + true + + + + + + + + + + obsolete Manganese-oxidizing + true + + + + + + + + + + obsolete Uranium-reducing + true + + + + + + + + + + obsolete Arsenate-reducing + true + + + + + + + + + + obsolete Selenate-reducing + true + + + + + + + + + + obsolete Selenite-reducing + true + + + + + + + + + + obsolete Perchlorate-reducing + true + + + + + + + + + + obsolete Chlorate-reducing + true + + + + + + + + + + obsolete Bromate-reducing + true + + + + + + + + + + obsolete Iodate-reducing + true + + + + + + + + + + obsolete Hydrogen-oxidizing + true + + + + + + + + + + obsolete Sulfur-oxidizing + true + + + + + + + + + + obsolete Ammonia oxidation + true + + + + + + + + + + obsolete Nitrite oxidation + true + + + + + + + + + + obsolete Complete ammonia-oxidizing + true + + + + + + + + + + obsolete Methane oxidation + true + + + + + + + + + + obsolete Carbon monoxide-oxidizing + true + + + + + + + + + + obsolete Nitrogen-fixing + true + + + + + + + + + A phenotype that describes how the rate and extent of population growth are affected by environmental pH. + pH growth + pH growth preference + + + + + A phenotype that describes how the rate and extent of population growth are affected by environmental pH. + + + + + + pH growth + + + + + + + + + + A pH growth preference characterized by optimal growth at near-neutral pH values, typically between pH 6.5 and 7.5. + Anthea Guo + neutralophile + neutralophilic + neutrophile + neutrophilic + + + + + A pH growth preference characterized by optimal growth at near-neutral pH values, typically between pH 6.5 and 7.5. + + + + + + + + + + + A pH growth preference in which an organism grows optimally at pH values above 9. + alkaliphile + alkaliphilic + alkalophile + alkalophilic + alkaphilic + + + + + A pH growth preference in which an organism grows optimally at pH values above 9. + + + + + + + + + + + + + + A pH growth preference in which an organism grows optimally at pH values below 5. + acidophil + acidophile + acidophilic + acidophilic + + + + + A pH growth preference in which an organism grows optimally at pH values below 5. + + + + + + + + + + acidophilic + + + + + + + + + + A pH growth preference in which an organism requires alkaline conditions (typically pH above 8.5) for growth and cannot grow at neutral or acidic pH. + Luke Wang + obligate alkaliphile + obligate alkaphilic + obligately alkaliphilic + obligately alkaphilic + + + + + A pH growth preference in which an organism requires alkaline conditions (typically pH above 8.5) for growth and cannot grow at neutral or acidic pH. + + + + + + + + + + + + + + A pH growth preference in which an organism can grow at alkaline pH but does not require it. + facultative alkaliphile + facultative alkaphilic + facultatively alkaliphilic + facultatively alkaphilic + + + + + A pH growth preference in which an organism can grow at alkaline pH but does not require it. + + + + + + + + + + + + + + A pH growth preference characterized by the requirement for acidic environments (pH below 5.5) for growth, with inability to grow at neutral or alkaline pH values. + Anthea Guo + Jed Dongjin Kim-Ozaeta + obligate acidophile + obligately acidophilic + obligately acidophilic + + + + + A pH growth preference characterized by the requirement for acidic environments (pH below 5.5) for growth, with inability to grow at neutral or alkaline pH values. + + + + + + + + + + A pH growth preference characterized by optimal growth in acidic environments (pH below 5.5) with the capacity to also grow at near-neutral pH values. + Anthea Guo + Jed Dongjin Kim-Ozaeta + facultative acidophile + facultatively acidophilic + facultatively acidophilic + + + + + A pH growth preference characterized by optimal growth in acidic environments (pH below 5.5) with the capacity to also grow at near-neutral pH values. + + + + + + + + + + + + + + A pH growth preference characterized by the ability to tolerate acidic environments (typically pH below 5.5) while maintaining optimal growth near neutral pH. + Anthea Guo + Jed Dongjin Kim-Ozaeta + aciduric + acidotolerant + + + + + A pH growth preference characterized by the ability to tolerate acidic environments (typically pH below 5.5) while maintaining optimal growth near neutral pH. + + + + + + + + + + A pH growth preference in which an organism can tolerate alkaline pH but grows optimally at neutral pH. + alkalitolerant + alkalotolerant + + + + + A pH growth preference in which an organism can tolerate alkaline pH but grows optimally at neutral pH. + + + + + + + + + + + + + + A phenotype characterized by the color of pigments produced by a microorganism. + cell color + pigmentation + + + + + A phenotype characterized by the color of pigments produced by a microorganism. + + + + + + cell color + + + + + + + + + + Pigment_black + black pigmented + + + + + Pigment_black + + + + + + + + + + Pigment_brown + brown pigmented + + + + + Pigment_brown + + + + + + + + + + Pigment_cream + cream pigmented + + + + + Pigment_cream + + + + + + + + + + Pigment_green + green pigmented + + + + + Pigment_green + + + + + + + + + + Pigment_orange + orange pigmented + + + + + Pigment_orange + + + + + + + + + + Pigment_pink + pink pigmented + + + + + Pigment_pink + + + + + + + + + + Pigment_red + red pigmented + + + + + Pigment_red + + + + + + + + + + Pigment_white + white pigmented + + + + + Pigment_white + + + + + + + + + + Pigment_yellow + yellow pigment + yellow pigmented + + + + + Pigment_yellow + + + + + + yellow pigment + + + + + + + + + + Pigment_carotenoid + carotenoid pigmentation + + + + + Pigment_carotenoid + + + + + + + + + + A phenotype where a microbe is a pathogen of of some host organism. + General.keywords + Safety information.risk assessment + pathogenic to host + + + + + A phenotype where a microbe is a pathogen of of some host organism. + + + + + + + General.keywords + + + + + + Safety information.risk assessment + + + + + + + + + + A pathogen that infects organisms in the kingdom Metazoa. + animal pathogen + animal pathogen + + + + + animal pathogen + + + + + + + + + + A pathogen that infects organisms in the kingdom Viridiplantae. + plant pathogen + plant pathogen + + + + + plant pathogen + + + + + + + + + + A pathogen that infects organisms of the species Homo sapiens. + human pathogen + human pathogen + + + + + A pathogen that infects organisms of the species Homo sapiens. + + + + + + human pathogen + + + + + + + + + + A material entity that provides the nutrients and environmental conditions necessary for the cultivation of microorganisms in vitro. Growth media may be liquid (broth) or solid (agar-based) and are formulated to support the growth of specific types of organisms. + This class is equivalent to OBI:0000079 'culture medium'. It is included in METPO to serve as the range for growth-related object properties. + growth medium + + + + + + A material entity that provides the nutrients and environmental conditions necessary for the cultivation of microorganisms in vitro. Growth media may be liquid (broth) or solid (agar-based) and are formulated to support the growth of specific types of organisms. + + + + + + + + + + A biological process in which ammonia is oxidized to nitrite (ammonia oxidation) and nitrite is oxidized to nitrate (nitrite oxidation), in two steps. + nitrification + MetaTraits maps to OMIT:0027217 (wrong ontology). Correct GO terms are GO:0019329 (ammonia oxidation) and GO:0019332 (nitrite oxidation). + nitrification + + + + + A biological process in which ammonia is oxidized to nitrite (ammonia oxidation) and nitrite is oxidized to nitrate (nitrite oxidation), in two steps. + + + + + + + nitrification + + + + + + + + + + An assay that tests the ability of an organism to produce indole from tryptophan. + indole test + indole test + + + + + An assay that tests the ability of an organism to produce indole from tryptophan. + + + + + + indole test + + + + + + + + + + A phenotype in which an organism tests positive in the indole test, indicating it produces indole from tryptophan. + indole test + indole test positive + + + + + indole test + + + + + + + + + + A phenotype in which an organism tests negative in the indole test, indicating it does not produce indole from tryptophan. + indole test negative + + + + + + + + + An assay that tests the ability of an organism to produce and maintain stable acid end products from glucose fermentation. + methyl red test + methyl red test + + + + + An assay that tests the ability of an organism to produce and maintain stable acid end products from glucose fermentation. + + + + + + methyl red test + + + + + + + + + + A phenotype in which an organism tests positive in the methyl red test, indicating mixed acid fermentation. + methyl red test + methyl red test positive + + + + + methyl red test + + + + + + + + + + A phenotype in which an organism tests negative in the methyl red test. + methyl red test negative + + + + + + + + + An assay that tests the ability of an organism to produce acetoin from glucose via the butanediol fermentation pathway. + voges-proskauer test + Voges-Proskauer test + + + + + An assay that tests the ability of an organism to produce acetoin from glucose via the butanediol fermentation pathway. + + + + + + voges-proskauer test + + + + + + + + + + A phenotype in which an organism tests positive in the Voges-Proskauer test, indicating acetoin production. + voges-proskauer test + Voges-Proskauer test positive + + + + + voges-proskauer test + + + + + + + + + + A phenotype in which an organism tests negative in the Voges-Proskauer test. + Voges-Proskauer test negative + + + + + + + + + A phenotype describing an organism that requires elevated concentrations of carbon dioxide for growth. + capnophilic + capnophilic + + + + + A phenotype describing an organism that requires elevated concentrations of carbon dioxide for growth. + + + + + + capnophilic + + + + + + + + + + A phenotype describing the ability of an organism to lyse red blood cells. + presence of hemolysis + hemolysis + + + + + A phenotype describing the ability of an organism to lyse red blood cells. + + + + + + presence of hemolysis + + + + + + + + + + A phenotype in which an organism is capable of lysing red blood cells. + hemolytic + + + + + + + + + A phenotype in which an organism does not lyse red blood cells. + non-hemolytic + + + + + + + + + A motility phenotype in which flagella are distributed over the entire cell surface. + flagellum arrangement + peritrichous flagellation + + + + + A motility phenotype in which flagella are distributed over the entire cell surface. + + + + + + flagellum arrangement + + + + + + + + + + A motility phenotype in which one or more flagella are located at one or both poles of the cell. + flagellum arrangement + polar flagellation + + + + + flagellum arrangement + + + + + + + + + + A motility phenotype in which a single flagellum is present at each pole of the cell. + amphitrichous flagellation + + + + + + + + + A motility phenotype in which a tuft of flagella is present at one or both poles of the cell. + lophotrichous flagellation + + + + + + + + + A motility phenotype in which a single flagellum is present at one pole of the cell. + monotrichous flagellation + + + + + + + + + A motility phenotype in which flagella emerge from the lateral side of the cell. + lateral flagellation + + + + + + + + + A motility phenotype in which flagella are located near but not at the cell pole. + subpolar flagellation + + + + + + + + + A biological process in which nitrate or nitrite is reduced to gaseous nitrogen compounds (NO, N2O, or N2) under anaerobic or microaerobic conditions. + denitrification pathway + denitrification + + + + + A biological process in which nitrate or nitrite is reduced to gaseous nitrogen compounds (NO, N2O, or N2) under anaerobic or microaerobic conditions. + + + + + + denitrification pathway + + + + + + + + + + A biological process in which atmospheric dinitrogen is reduced to ammonia, catalyzed by nitrogenase. + nitrogen fixation + nitrogen fixation + + + + + A biological process in which atmospheric dinitrogen is reduced to ammonia, catalyzed by nitrogenase. + + + + + + nitrogen fixation + + + + + + + + + + A phenotype describing an organism with a broad ecological niche, capable of thriving across diverse environments or utilizing varied resources. + generalist + generalist + + + + + A phenotype describing an organism with a broad ecological niche, capable of thriving across diverse environments or utilizing varied resources. + + + + + + generalist + + + + + + + + + + A phenotype characterized by the arrangement pattern of flagella on a bacterial or archaeal cell (e.g. peritrichous, polar, amphitrichous, lophotrichous, monotrichous, lateral, subpolar). + Marcin Joachimiak + flagellation pattern + subset=metpo_proposal_2026_04; priority=HIGH; xrefs=GO:0001539 + flagellar arrangement + + + + + A phenotype characterized by the arrangement pattern of flagella on a bacterial or archaeal cell (e.g. peritrichous, polar, amphitrichous, lophotrichous, monotrichous, lateral, subpolar). + + + + + + + + + + A flagellar arrangement in which multiple flagella (typically a tuft) are present per cell, often combined with polar attachment. + Marcin Joachimiak + polytrichous + subset=metpo_proposal_2026_04; priority=MEDIUM; observations=4 + polytrichous flagellation + + + + + A flagellar arrangement in which multiple flagella (typically a tuft) are present per cell, often combined with polar attachment. + + + + + + + + + + A phenotype characterized by macroscopic colony characteristics such as shape, margin, elevation, surface, colour, and size. + Marcin Joachimiak + subset=metpo_proposal_2026_04; priority=LOW; xrefs=PATO:0000052 + colony morphology + + + + + A phenotype characterized by macroscopic colony characteristics such as shape, margin, elevation, surface, colour, and size. + + + + + + + + + + A colony morphology characterized by the overall macroscopic colony outline as observed on solid medium. + Marcin Joachimiak + subset=metpo_proposal_2026_04; priority=LOW; xrefs=PATO:0000052 + colony shape + + + + + A colony morphology characterized by the overall macroscopic colony outline as observed on solid medium. + + + + + + + + + + A colony shape that has a regular round outline. + Marcin Joachimiak + round colony + subset=metpo_proposal_2026_04; priority=LOW; observations=2649 + circular colony + + + + + A colony shape that has a regular round outline. + + + + + + + + + + A colony shape that has an irregular (non-round, non-rhizoid) outline. + Marcin Joachimiak + subset=metpo_proposal_2026_04; priority=LOW; observations=148 + irregular colony + + + + + A colony shape that has an irregular (non-round, non-rhizoid) outline. + + + + + + + + + + A colony shape that has a thread-like or filamentous outline. + Marcin Joachimiak + subset=metpo_proposal_2026_04; priority=LOW; observations=16 + filamentous colony + + + + + A colony shape that has a thread-like or filamentous outline. + + + + + + + + + + A colony shape that is very small (pinpoint), typically <1 mm in diameter. + Marcin Joachimiak + subset=metpo_proposal_2026_04; priority=LOW; observations=11 + punctiform colony + + + + + A colony shape that is very small (pinpoint), typically <1 mm in diameter. + + + + + + + + + + A colony shape that has a branching, root-like outline. + Marcin Joachimiak + subset=metpo_proposal_2026_04; priority=LOW; observations=8 + rhizoid colony + + + + + A colony shape that has a branching, root-like outline. + + + + + + + + + + A colony shape that has a raised opaque centre and a translucent peripheral zone, resembling a fried egg. + Marcin Joachimiak + fried-egg colony + subset=metpo_proposal_2026_04; priority=LOW; observations=6 + fried-egg-shaped colony + + + + + A colony shape that has a raised opaque centre and a translucent peripheral zone, resembling a fried egg. + + + + + + + + + + A phenotype characterized by the ability to grow under elevated hydrostatic pressure. + Marcin Joachimiak + barophile + piezophile + subset=metpo_proposal_2026_04; priority=MEDIUM + pressure tolerance + + + + + A phenotype characterized by the ability to grow under elevated hydrostatic pressure. + + + + + + + + + + A pressure tolerance in which an organism requires or tolerates elevated hydrostatic pressure for growth. + Marcin Joachimiak + subset=metpo_proposal_2026_04; priority=MEDIUM + barophile phenotype + + + + + A pressure tolerance in which an organism requires or tolerates elevated hydrostatic pressure for growth. + + + + + + + + + + A phenotype characterized by the ability to withstand ionizing or UV radiation. + Marcin Joachimiak + radioresistant + subset=metpo_proposal_2026_04; priority=MEDIUM + radiation tolerance + + + + + A phenotype characterized by the ability to withstand ionizing or UV radiation. + + + + + + + + + + A phenotype characterized by the ability to grow under high osmotic pressure (non-NaCl). + Marcin Joachimiak + osmophile + subset=metpo_proposal_2026_04; priority=MEDIUM + osmotic tolerance + + + + + A phenotype characterized by the ability to grow under high osmotic pressure (non-NaCl). + + + + + + + + + + A phenotype characterized by the ability to grow in the presence of elevated metal concentrations. + Marcin Joachimiak + metallophile + subset=metpo_proposal_2026_04; priority=MEDIUM + metal tolerance + + + + + A phenotype characterized by the ability to grow in the presence of elevated metal concentrations. + + + + + + + + + + A phenotype characterized by the presence of an extracellular polysaccharide capsule. + Marcin Joachimiak + subset=metpo_proposal_2026_04; priority=LOW; xrefs=GO:0042603 + capsule presence + + + + + A phenotype characterized by the presence of an extracellular polysaccharide capsule. + + + + + + + + + + A phenotype characterized by the ability to form surface-attached biofilms. + Marcin Joachimiak + subset=metpo_proposal_2026_04; priority=MEDIUM; xrefs=GO:0042710 + biofilm formation capability + + + + + A phenotype characterized by the ability to form surface-attached biofilms. + + + + + + + + + + A biochemical test that detects catalase enzyme activity by exposing cells to hydrogen peroxide and observing for visible bubbling. The test outcome (positive or negative) is captured by its child classes; this class itself does not assert that the organism has catalase activity. + Marcin Joachimiak + catalase activity test + catalase assay + subset=metpo_proposal_2026_04; priority=MEDIUM + catalase test + + + + + A biochemical test that detects catalase enzyme activity by exposing cells to hydrogen peroxide and observing for visible bubbling. The test outcome (positive or negative) is captured by its child classes; this class itself does not assert that the organism has catalase activity. + + + + + + + + + + A biochemical test that detects cytochrome c oxidase activity using a redox indicator. The test outcome (positive or negative) is captured by its child classes; this class itself does not assert oxidase activity. + Marcin Joachimiak + cytochrome oxidase test + oxidase activity test + subset=metpo_proposal_2026_04; priority=MEDIUM + oxidase test + + + + + A biochemical test that detects cytochrome c oxidase activity using a redox indicator. The test outcome (positive or negative) is captured by its child classes; this class itself does not assert oxidase activity. + + + + + + + + + + A biochemical test that detects urease enzyme activity by observing urea hydrolysis (typically via a pH-indicator color change). The test outcome (positive or negative) is captured by its child classes; this class itself does not assert urease activity. + Marcin Joachimiak + urea hydrolysis test + urease activity test + subset=metpo_proposal_2026_04; priority=MEDIUM + urease test + + + + + A biochemical test that detects urease enzyme activity by observing urea hydrolysis (typically via a pH-indicator color change). The test outcome (positive or negative) is captured by its child classes; this class itself does not assert urease activity. + + + + + + + + + + Test-outcome phenotype where the catalase test yields a positive result (visible bubbling on H2O2). The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000302 'shows activity of' GO:0004096 'catalase activity'. + Marcin Joachimiak + catalase + + catalase test positive + subset=metpo_proposal_2026_04; priority=MEDIUM; xrefs=GO:0004096 + catalase positive + + + + + Test-outcome phenotype where the catalase test yields a positive result (visible bubbling on H2O2). The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000302 'shows activity of' GO:0004096 'catalase activity'. + + + + + + + + + + Test-outcome phenotype where the catalase test yields a negative result (no bubbling on H2O2). The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000303 'does not show activity of' GO:0004096 'catalase activity'. + Marcin Joachimiak + catalase - + catalase test negative + subset=metpo_proposal_2026_04; priority=MEDIUM + catalase negative + + + + + Test-outcome phenotype where the catalase test yields a negative result (no bubbling on H2O2). The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000303 'does not show activity of' GO:0004096 'catalase activity'. + + + + + + + + + + Test-outcome phenotype where the oxidase test yields a positive result. The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000302 'shows activity of' GO:0004129 'cytochrome-c oxidase activity'. + Marcin Joachimiak + oxidase + + oxidase test positive + subset=metpo_proposal_2026_04; priority=MEDIUM; xrefs=GO:0004129 + oxidase positive + + + + + Test-outcome phenotype where the oxidase test yields a positive result. The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000302 'shows activity of' GO:0004129 'cytochrome-c oxidase activity'. + + + + + + + + + + Test-outcome phenotype where the oxidase test yields a negative result. The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000303 'does not show activity of' GO:0004129 'cytochrome-c oxidase activity'. + Marcin Joachimiak + oxidase - + oxidase test negative + subset=metpo_proposal_2026_04; priority=MEDIUM + oxidase negative + + + + + Test-outcome phenotype where the oxidase test yields a negative result. The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000303 'does not show activity of' GO:0004129 'cytochrome-c oxidase activity'. + + + + + + + + + + Test-outcome phenotype where the urease test yields a positive result. The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000302 'shows activity of' GO:0009039 'urease activity'. + Marcin Joachimiak + urease + + urease test positive + subset=metpo_proposal_2026_04; priority=MEDIUM; xrefs=GO:0009039 + urease positive + + + + + Test-outcome phenotype where the urease test yields a positive result. The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000302 'shows activity of' GO:0009039 'urease activity'. + + + + + + + + + + Test-outcome phenotype where the urease test yields a negative result. The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000303 'does not show activity of' GO:0009039 'urease activity'. + Marcin Joachimiak + urease - + urease test negative + subset=metpo_proposal_2026_04; priority=MEDIUM + urease negative + + + + + Test-outcome phenotype where the urease test yields a negative result. The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000303 'does not show activity of' GO:0009039 'urease activity'. + + + + + + + + + + A phenotype characterized by coagulase enzyme activity (clotting of blood plasma); a diagnostic marker, e.g. for Staphylococcus aureus. + Marcin Joachimiak + coagulase test + subset=metpo_proposal_2026_04; priority=MEDIUM + coagulase activity + + + + + A phenotype characterized by coagulase enzyme activity (clotting of blood plasma); a diagnostic marker, e.g. for Staphylococcus aureus. + + + + + + + + + + Test-outcome phenotype where the coagulase test yields a positive result (plasma clotting). The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000302 'shows activity of' <coagulase enzyme term> once a sufficiently specific enzyme term is selected (no GO/EC term currently exists at the bacteriological coagulase test granularity). + Marcin Joachimiak + coagulase + + coagulase test positive + subset=metpo_proposal_2026_04; priority=MEDIUM + coagulase positive + + + + + Test-outcome phenotype where the coagulase test yields a positive result (plasma clotting). The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000302 'shows activity of' <coagulase enzyme term> once a sufficiently specific enzyme term is selected (no GO/EC term currently exists at the bacteriological coagulase test granularity). + + + + + + + + + + Test-outcome phenotype where the coagulase test yields a negative result. The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000303 'does not show activity of' <coagulase enzyme term> once a sufficiently specific enzyme term is selected. + Marcin Joachimiak + coagulase - + coagulase test negative + subset=metpo_proposal_2026_04; priority=MEDIUM + coagulase negative + + + + + Test-outcome phenotype where the coagulase test yields a negative result. The underlying enzyme-organism relation should additionally be asserted via <organism> METPO:2000303 'does not show activity of' <coagulase enzyme term> once a sufficiently specific enzyme term is selected. + + + + + + + + + + A phenotype characterized by a microbe that thrives in low water-activity environments (typically aw < 0.85), where the limiting factor is water activity (aw) rather than solute concentration; distinct from halophily and osmotic tolerance. + Marcin Joachimiak + xerophile + xerotolerant + subset=metpo_proposal_2026_04; priority=MEDIUM + xerophilic phenotype + + + + + A phenotype characterized by a microbe that thrives in low water-activity environments (typically aw < 0.85), where the limiting factor is water activity (aw) rather than solute concentration; distinct from halophily and osmotic tolerance. + + + + + + + + + + A phenotype characterized by a microbe that lives on the external surface of a host organism or substrate, as distinct from endosymbionts (which live inside the host); captures host-association mode, not specific host taxonomy. + Marcin Joachimiak + ectosymbiont + epibiont + subset=metpo_proposal_2026_04; priority=LOW + epibiont phenotype + + + + + A phenotype characterized by a microbe that lives on the external surface of a host organism or substrate, as distinct from endosymbionts (which live inside the host); captures host-association mode, not specific host taxonomy. + + + + + + + + + + + obsolete obsolete + true + diff --git a/src/ontology/Makefile b/src/ontology/Makefile index 4436dfad..c57f0e32 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -539,7 +539,7 @@ $(ONT)-base.owl: $(EDIT_PREPROCESSED) $(OTHER_SRC) $(IMPORT_FILES) reason --reasoner ELK --equivalent-classes-allowed asserted-only --exclude-tautologies structural --annotate-inferred-axioms False \ relax \ reduce -r ELK \ - remove --base-iri $(URIBASE)/METPO --axioms external --preserve-structure false --trim false \ + remove --base-iri $(URIBASE)/metpo --axioms external --preserve-structure false --trim false \ $(SHARED_ROBOT_COMMANDS) \ annotate --link-annotation http://purl.org/dc/elements/1.1/type http://purl.obolibrary.org/obo/IAO_8000001 \ --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) \