remove URL to plotmo

Author: bgreenwell

R/partial.R

@@ -39,7 +39,7 @@
 #' \strong{plotmo} package). If \code{TRUE}, then \code{partial()} will compute
 #' predictions across the predictors specified in \code{pred.var} while holding
 #' the other predictors constant (a "poor man's partial dependence" function as
-#' Stephen Milborrow, the author of \code{\link[plotmo]{plotmo}}, puts it).
+#' Stephen Milborrow, the author of \strong{plotmo} package), puts it).
 #' Default is \code{FALSE}. Note this works with \code{ice = TRUE} as well.
 #' WARNING: This option is currently experimental. Use at your own risk. It is
 #' possible (and arguably safer) to do this manually by passing a specific

man/partial.Rd

@@ -29,7 +29,7 @@
 # Load required packages
 library(caret)
 library(doParallel)
-# library(dplyr)  # use dplyr:: instead to avoid conflictions with plyr!
+# library(dplyr)  # use dplyr:: instead to avoid conflicts with plyr!
 library(e1071)
 library(earth)
 library(ggplot2)
@@ -163,7 +163,7 @@ iris.svm <- svm(Species ~ ., data = iris, kernel = "radial", gamma = 0.75,
 pd <- NULL
 for (i in 1:3) {
   tmp <- partial(iris.svm, pred.var = c("Petal.Width", "Petal.Length"),
-                 which.class = i, progress = "text",
+                 which.class = i, progress = TRUE,
                  grid.resolution = 101)
   pd <- rbind(pd, cbind(tmp, Species = levels(iris$Species)[i]))
 }