Modify Pheno005

Author: Arshitha

pheno005/README.md

@@ -1,4 +1,4 @@
-# BEP036 example dataset 05: Two multi-run sessions with one imaging-only session
+# Pheno005 example dataset: Two multi-run sessions with one imaging-only session
 
 This dataset contains imaging and phenotypic data with multiple runs from the baseline session and phenotypic data from followup sessions. The file tree is as follows:
 
@@ -9,9 +9,7 @@ pheno003
 |-- participants.tsv
 |-- phenotype
 |   |-- ace.json
-|   |-- ace.tsv
-|   |-- demographics.json
-|   `-- demographics.tsv
+|   `-- ace.tsv
 |-- sessions.json
 |-- sessions.tsv
 |-- sub-01
@@ -25,6 +23,6 @@ pheno003
             |-- sub-02_ses-baseline_T1w.json
             `-- sub-02_ses-baseline_T1w.nii.gz
 
-8 directories, 13 files
+8 directories, 11 files
 
 ```

pheno005/dataset_description.json

@@ -8,5 +8,6 @@
 		"Eric Earl",
 		"Sebastian Urchs",
 		"Samuel Guay"
-	]
-}
+	],
+	"AdditionalValidation": "Phenotype"
+}

pheno005/participants.json

@@ -1,5 +1,61 @@
 {
 	"participant_id": {
-		"Description": "OpenNeuro ID of the subject."
+		"Description": "Unique participant identifier."
+	},
+	"sex": {
+		"Description": "Sex assigned at birth.",
+		"Levels": {
+			"m": "Male",
+			"f": "Female"
+		}
+	},
+	"age": {
+		"Description": "Age of the participant.",
+		"Units": "years"
+	},
+	"race": {
+		"LongName": "RACE_1",
+		"Description": "Race:",
+		"Levels": {
+			"1": "American Indian/Alaska Native",
+			"2": "Asian",
+			"3": "Hawaiian/Pacific Islander",
+			"4": "Black/African American",
+			"5": "White/Caucasian",
+			"6": "Multiple race",
+			"7": "Unknown"
+		}
+	},
+	"ethnicity": {
+		"LongName": "ETHNICITY_1",
+		"Description": "Ethnicity:",
+		"Levels": {
+			"0": "Not Hispanic or Latino",
+			"1": "Hispanic or Latino",
+			"2": "Unknown"
+		}
+	},
+	"education": {
+		"LongName": "EDUCATION",
+		"Description": "Education level:",
+		"Levels": {
+			"0": "High school graduate or above",
+			"1": "Some college or above",
+			"2": "Associates degree or above",
+			"3": "Bachelors degree or above",
+			"4": "Advanced/professional degree"
+		}
+	},
+	"marital_status": {
+		"LongName": "MARITAL_STATUS",
+		"Description": "Marital Status:",
+		"Levels": {
+			"1": "Single/Never married",
+			"2": "Married or living with someone as if married",
+			"3": "Divorced or annulled",
+			"4": "Separated",
+			"5": "Widowed",
+			"6": "Other"
+		}
 	}
 }

pheno005/participants.tsv

@@ -1,3 +1,3 @@
-participant_id
-sub-01
-sub-02
+participant_id	age	sex	race	ethnicity	education	marital_status
+sub-01	22	m	3	0	4	1
+sub-02	63	f	6	0	3	2

pheno005/phenotype/demographics.json

@@ -16,6 +16,10 @@
 			"run-02": "Second run of the session."
 		}
 	},
+	"age": {
+		"Description": "Age of the participant at the time of the visit.",
+		"Units": "years"
+	},
 	"acq_time": {
 		"Description": "Date and time of data acquisition in YYYY-MM-DD HH:MM:SS format."
 	}

pheno005/phenotype/demographics.tsv

@@ -1,6 +1,6 @@
-participant_id	session_id	run	acq_time
-sub-01	ses-baseline	run-01	2001-01-05 10:05:23
-sub-01	ses-baseline	run-02	2001-01-05 14:15:59
-sub-01	ses-followup	run-01	2003-02-06 09:45:00
-sub-02	ses-baseline	run-01	2001-01-13 12:04:08
-sub-02	ses-baseline	run-02	2001-01-13 16:20:17
+participant_id	session_id	run	age	acq_time
+sub-01	ses-baseline	run-01	22	2001-01-05 10:05:23
+sub-01	ses-baseline	run-02	22	2001-01-05 14:15:59
+sub-01	ses-followup	run-01	24	2003-02-06 09:45:00
+sub-02	ses-baseline	run-01	63	2001-01-13 12:04:08
+sub-02	ses-baseline	run-02	63	2001-01-13 16:20:17