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Add pheno006 example. No sessions file example.
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‎pheno005/README.md‎

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This dataset contains imaging and phenotypic data with multiple runs from the baseline session and phenotypic data from followup sessions. The file tree is as follows:
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```bash
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pheno003
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pheno005
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|-- README.md
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|-- participants.json
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|-- participants.tsv

‎pheno006/README.md‎

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# Pheno006 example dataset: Two sessions with one imaging-only session. No sessions files
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This dataset contains imaging and phenotypic data from the baseline session and phenotypic data from followup sessions. This an example of a case where adding sessions files does not provide any new information. In other, sessions files is not necessary. The file tree is as follows:
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```bash
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pheno006
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|-- README.md
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|-- participants.json
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|-- participants.tsv
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|-- phenotype
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| |-- ace.json
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| `-- ace.tsv
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|-- sub-01
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| `-- ses-baseline
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| `-- anat
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| |-- sub-01_ses-baseline_T1w.json
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| `-- sub-01_ses-baseline_T1w.nii.gz
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`-- sub-02
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`-- ses-baseline
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`-- anat
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|-- sub-02_ses-baseline_T1w.json
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`-- sub-02_ses-baseline_T1w.nii.gz
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8 directories, 9 files
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```

‎pheno006/dataset_description.json‎

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{
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"Name": "BEP036 example dataset 06: Two sessions with one imaging-only session. (No sessions file example)",
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"BIDSVersion": "1.10.0",
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"DatasetType": "raw",
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"License": "CC0",
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"Authors": [
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"Arshitha Basavaraj",
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"Eric Earl",
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"Sebastian Urchs",
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"Samuel Guay"
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],
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"AdditionalValidation": "Phenotype"
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}

‎pheno006/participants.json‎

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{
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"participant_id": {
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"Description": "Unique participant identifier."
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},
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"session_id": {
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"Description": "ID assigned to participant's visit.",
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"Levels": {
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"ses-baseline": "First imaging and phenotype data collection visit",
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"ses-followup": "Second phenotype data collection visit."
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}
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},
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"sex": {
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"Description": "Biological sex of the participant.",
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"Levels": {
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"m": "Male",
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"f": "Female"
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}
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},
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"age": {
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"Description": "Age of the participant at the time of the visit.",
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"Units": "years"
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}
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}

‎pheno006/participants.tsv‎

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participant_id session_id sex age
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sub-01 ses-baseline m 22
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sub-01 ses-followup m 24
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sub-02 ses-baseline f 63

‎pheno006/phenotype/ace.json‎

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{
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"participant_id": {
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"Description": "Unique participant identifier."
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},
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"session_id": {
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"Description": "ID assigned to participant's visit.",
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"Levels": {
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"ses-baseline": "First imaging and phenotype data collection visit.",
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"ses-followup": "Second phenotype data collection visit."
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}
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},
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"b_ace_q1": {
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"LongName": "ACE_HUMILIATE_HURT (question ID 176435)",
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"Description": "1. Did a parent or other adult in the household often swear at you, insult you, put you down, or humiliate you, or act in a way that made you afraid that you might be physically hurt?",
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"Levels": {
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"1": "Yes",
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"0": "No"
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}
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},
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"b_ace_q2": {
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"LongName": "ACE_INJURE (question ID 176436)",
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"Description": "2. Did a parent or other adult in the household often push, grab, slap, or throw something at you or ever hit you so hard that you had marks or were injured? ",
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"Levels": {
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"1": "Yes",
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"0": "No"
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}
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},
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"b_ace_q3": {
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"LongName": "ACE_TOUCH_SEX_WAY (question ID 176437)",
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"Description": "3. Did an adult or person at least 5 years older than you ever touch or fondle you or have you touch their body in a sexual way or try to or actually have oral, anal, or vaginal sex with you? ",
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"Levels": {
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"1": "Yes",
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"0": "No"
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}
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},
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"b_ace_q4": {
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"LongName": "ACE_NO_LOVE_SUPPORT (question ID 176438)",
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"Description": "4. Did you often feel that no one in your family loved you or thought you were important or special or your family didn't look out for each other, feel close to each other, or support each other? ",
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"Levels": {
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"1": "Yes",
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"0": "No"
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}
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},
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"b_ace_q5": {
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"LongName": "ACE_PROTECT_CARE (question ID 176439)",
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"Description": "5. Did you often feel that you didn't have enough to eat, had to wear dirty clothes, and had no one to protect you or your parents were too drunk or high to take care of you or take you to the doctor if you needed it?",
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"Levels": {
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"1": "Yes",
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"0": "No"
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}
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},
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"tesi_s_165": {
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"LongName": "ACE_SEPARATE_DIVORCE (question ID 176440)",
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"Description": "6. Were your parents ever separated or divorced?",
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"Levels": {
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"1": "Yes",
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"0": "No"
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}
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},
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"b_ace_q7": {
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"LongName": "ACE_MOTHER_HURT (question ID 176441)",
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"Description": "7. Was your mother or stepmother: Often pushed, grabbed, slapped, or had something thrown at her? or sometimes or often kicked, bitten, hit with a fist, or hit with something hard? or ever repeatedly hit over at least a few minutes or threatened with a gun or knife? ",
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"Levels": {
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"1": "Yes",
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"0": "No"
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}
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},
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"b_ace_q8": {
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"LongName": "ACE_LIVE_ALCOHOL_DRUGS (question ID 176442)",
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"Description": "8. Did you live with anyone who was a problem drinker or alcoholic or who used street drugs? ",
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"Levels": {
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"1": "Yes",
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"0": "No"
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}
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},
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"b_ace_q9": {
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"LongName": "ACE_HOUSEHOLD_DEPRESS (question ID 176443)",
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"Description": "9. Was a household member depressed or mentally ill or did a household member attempt suicide? ",
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"Levels": {
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"1": "Yes",
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"0": "No"
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}
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},
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"ceahd15": {
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"LongName": "ACE_HOUSEHOLD_PRISON (question ID 176444)",
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"Description": "10. Did a household member go to prison?",
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"Levels": {
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"1": "Yes",
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"0": "No"
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}
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}
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}

‎pheno006/phenotype/ace.tsv‎

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participant_id session_id b_ace_q1 b_ace_q2 b_ace_q3 b_ace_q4 b_ace_q5 tesi_s_165 b_ace_q7 b_ace_q8 b_ace_q9 ceahd15
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sub-01 ses-baseline 0 0 0 0 0 0 1 0 0 0
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sub-01 ses-followup 1 0 0 1 0 1 0 0 0 0
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sub-02 ses-baseline 1 0 0 0 0 0 0 0 0 0

‎pheno006/sub-01/ses-baseline/anat/sub-01_ses-baseline_T1w.json‎

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{
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"Modality": "MR",
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"MagneticFieldStrength": 3,
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"ImagingFrequency": 127.697,
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"Manufacturer": "GE",
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"ManufacturersModelName": "DISCOVERY MR750",
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"InstitutionName": "NIH FMRIF",
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"DeviceSerialNumber": "000301496MR3T6MR",
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"StationName": "fmrif3tb",
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"BodyPartExamined": "BRAIN",
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"PatientPosition": "HFS",
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"ProcedureStepDescription": "MRI Brain",
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"SoftwareVersions": "27\\LX\\MR Software release:DV26.0_R01_1725.a",
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"MRAcquisitionType": "3D",
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"SeriesDescription": "Accelerated Sagittal IR-FSPGR",
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"ProtocolName": "ADNI3 FMRIF Enhanced Pro",
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"ScanningSequence": "GR",
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"SequenceVariant": "SS\\SP\\SK",
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"ScanOptions": "FAST_GEMS\\EDR_GEMS\\FILTERED_GEMS\\ACC_GEMS\\IR_GEMS",
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"ImageType": [
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"ORIGINAL",
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"PRIMARY",
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"OTHER"
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],
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"SeriesNumber": 3,
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"AcquisitionTime": "14:20:39.000000",
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"AcquisitionNumber": 1,
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"SliceThickness": 1.2,
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"SpacingBetweenSlices": 1.2,
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"SAR": 0.159922,
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"EchoTime": 0.003036,
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"RepetitionTime": 0.007348,
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"SpoilingState": true,
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"InversionTime": 0.4,
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"FlipAngle": 11,
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"CoilString": "32Ch Head",
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"PercentPhaseFOV": 100,
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"PercentSampling": 100,
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"AcquisitionMatrixPE": 256,
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"ReconMatrixPE": 256,
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"ParallelReductionFactorInPlane": 1.72974,
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"PixelBandwidth": 244.141,
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"ImageOrientationPatientDICOM": [
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0,
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1,
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0,
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0,
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0,
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-1
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],
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"InPlanePhaseEncodingDirectionDICOM": "ROW",
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"ConversionSoftware": "dcm2niix",
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"ConversionSoftwareVersion": "v1.0.20211006",
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"Dcm2bidsVersion": "2.1.6",
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"AnatomicalLandmarkCoordinates": {
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"NAS": [
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96.99963391304016,
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217.00000713174342,
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132.00000993690617
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],
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"LPA": [
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38.99985516548157,
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134.00001106030345,
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109.00000818113267
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],
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"RPA": [
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151.99943243799208,
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132.00001115496755,
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109.00000818113267
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]
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}
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}

‎pheno006/sub-01/ses-baseline/anat/sub-01_ses-baseline_T1w.nii.gz‎

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‎pheno006/sub-02/ses-baseline/anat/sub-02_ses-baseline_T1w.json‎

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{
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"Modality": "MR",
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"MagneticFieldStrength": 3,
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"ImagingFrequency": 127.696,
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"Manufacturer": "GE",
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"ManufacturersModelName": "DISCOVERY MR750",
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"InstitutionName": "NIH FMRIF",
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"DeviceSerialNumber": "000301496MR3T6MR",
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"StationName": "FMRI3tb",
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"BodyPartExamined": "BRAIN",
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"PatientPosition": "HFS",
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"ProcedureStepDescription": "MRI Brain",
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"SoftwareVersions": "27\\LX\\MR Software release:DV26.0_R03_1831.b",
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"MRAcquisitionType": "3D",
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"SeriesDescription": "ORIG Anat T1w MP-RAGE 1mm (ABCD)",
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"ProtocolName": "ADNI3 FMRIF Enhanced Pro",
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"ScanningSequence": "RM",
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"SequenceVariant": "NONE",
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"ScanOptions": "EDR_GEMS\\PROMO_GEMS\\ACC_GEMS\\IR_GEMS",
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"ImageType": [
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"ORIGINAL",
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"PRIMARY",
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"OTHER"
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],
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"SeriesNumber": 40003,
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"AcquisitionTime": "15:33:5.000000",
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"AcquisitionNumber": 1,
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"SliceThickness": 1,
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"SpacingBetweenSlices": 1,
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"SAR": 0.121617,
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"EchoTime": 0.00292,
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"RepetitionTime": 0.006952,
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"InversionTime": 1.06,
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"FlipAngle": 8,
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"CoilString": "32Ch Head",
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"PercentPhaseFOV": 100,
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"PercentSampling": 100,
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"AcquisitionMatrixPE": 256,
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"ReconMatrixPE": 256,
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"ParallelReductionFactorInPlane": 2,
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"ParallelReductionOutOfPlane": 2,
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"PixelBandwidth": 244.141,
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"ImageOrientationPatientDICOM": [
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0,
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1,
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0,
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0,
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0,
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-1
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],
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"InPlanePhaseEncodingDirectionDICOM": "ROW",
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"ConversionSoftware": "dcm2niix",
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"ConversionSoftwareVersion": "v1.0.20211006",
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"Dcm2bidsVersion": "2.1.6",
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"AnatomicalLandmarkCoordinates": {
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"NAS": [
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111.79899853515624,
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216.0946962158203,
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125.91931025390625
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],
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"LPA": [
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36.48359853515625,
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138.14889621582032,
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92.27751025390626
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],
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"RPA": [
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175.88069853515626,
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122.28609621582031,
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92.83361025390624
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]
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}
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}

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