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Merge remote-tracking branch 'origin/master' into enh-project-datasettype
* origin/master: Remove AcquisitionDuration for now Only validate dw_deriv with schema validator TMP: Use schema from associated specification PR "dwi_deriv": Add InstitutionName dwi_deriv: Rename tensor-model-derived b=0 estimate image New dataset "dwi_deriv" for scanner-generated DWI derivatives Bump denoland/setup-deno from 1 to 2 HED-SCORE example of EEG and iEEG data with annotations of artifacts, seizures and a modulator
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‎.github/workflows/validate_datasets.yml‎

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@@ -61,7 +61,7 @@ jobs:
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bash -c "npm install -g bids-validator-*.tgz"
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popd
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- uses: denoland/setup-deno@v1
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- uses: denoland/setup-deno@v2
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if: "matrix.bids-validator == 'master-deno'"
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with:
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deno-version: v1.x
@@ -99,7 +99,7 @@ jobs:
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shell: bash
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- name: Skip MRS validation for legacy validator
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run: for DS in mrs_*; do touch $DS/.SKIP_VALIDATION; done
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run: for DS in mrs_* dwi_deriv; do touch $DS/.SKIP_VALIDATION; done
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if: "matrix.bids-validator != 'master-deno'"
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shell: bash
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@@ -111,4 +111,4 @@ jobs:
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env:
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# When proposing new features, schema changes may be necessary.
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# Update this URL to the schema.json from PRs to the spec, when needed.
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BIDS_SCHEMA: https://bids-specification.readthedocs.io/en/latest/schema.json
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BIDS_SCHEMA: https://bids-specification--1864.org.readthedocs.build/en/1864/schema.json

‎dataset_listing.tsv‎

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mrs_2dmrsi 2D sLASER MRSI data from 8 subjects [link](https://zenodo.org/records/7701228) [@markmikkelsen](https://github.com/markmikkelsen) anat, mrs T1w, mrsi
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mrs_biggaba MEGA-PRESS and PRESS MRS data from 12 subjects from one site from the Big GABA project [link](https://www.nitrc.org/projects/biggaba) [@markmikkelsen](https://github.com/markmikkelsen) anat, mrs T1w, mrsref, svs
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mrs_fmrs Functional MRS data involving a pain stimulus task from 15 subjects [link](https://www.nitrc.org/projects/fmrs_2020) [@markmikkelsen](https://github.com/markmikkelsen) anat, mrs T1w, events, mrsref, svs
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xeeg_hed_score EEG and iEEG data with annotations of artifacts, seizures and modulators using HED-SCORE [@dorahermes](https://github.com/dorahermes) eeg, anat, ieeg channels, coordsystem, electrodes, events, ieeg, eeg, T1w

‎dwi_deriv/README.md‎

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# Scanner-generated Diffusion MRI derivatives
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This single-subject dataset exemplifies the storage of diffusion MRI derivates
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that may be generated on the Siemens XA platform.
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Author: Robert E. Smith <[email protected]>.
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This dataset is made available under the Public Domain Dedication and License v1.0,
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whose full text can be found at http://www.opendatacommons.org/licenses/pddl/1.0/.
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The author acknowledges the facilities and scientific and technical assistance of the National Imaging Facility,
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a National Collaborative Research Infrastructure Strategy (NCRIS) capability,
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at the Melbourne Brain Centre (Austin), Florey Institute, Heidelberg, Victoria, Australia.

‎dwi_deriv/dataset_description.json‎

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{
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"Name": "Scanner-denerated Diffusion MRI derivatives",
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"DatasetType": "raw",
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"BIDSVersion": "1.10.0",
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"License": "This dataset is made available under the Public Domain Dedication and License v1.0, whose full text can be found at http://www.opendatacommons.org/licenses/pddl/1.0/.",
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"Authors": ["Robert E. Smith"],
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"Acknowledgements": "The author acknowledges the facilities and scientific and technical assistance of the National Imaging Facility, a National Collaborative Research Infrastructure Strategy (NCRIS) capability, at the Melbourne Brain Centre (Austin), Florey Institute, Heidelberg, Victoria, Australia."
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}

‎dwi_deriv/sub-01/dwi/sub-01_ADC.json‎

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"PatientPosition": "HFS",
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"MRAcquisitionType": "2D",
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"SeriesDescription": "DWI_2p5mm_AllDerivatives_Free_ADC",
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‎dwi_deriv/sub-01/dwi/sub-01_ADC.nii‎

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‎dwi_deriv/sub-01/dwi/sub-01_FA.json‎

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{
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"SoftwareVersions": "syngo MR XA50",
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"MRAcquisitionType": "2D",
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"SeriesDescription": "DWI_2p5mm_AllDerivatives_Free_FA",
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"ProtocolName": "DWI_2p5mm_AllDerivatives_Free",
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"ScanningSequence": "EP",
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"SequenceVariant": "SK\\SP",
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"ScanOptions": "FS",
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"PulseSequenceName": "*epse2d1_96",
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‎dwi_deriv/sub-01/dwi/sub-01_FA.nii‎

Whitespace-only changes.

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