Merge pull request #399 from Remi-Gau/ds116_cleanup

[MAINT] ds116 cleanup

Author: effigies

ds116/code/clean_events.py

@@ -0,0 +1,18 @@
+import pandas as pd
+from pathlib import Path
+from rich import print
+
+root = Path(__file__).parent.parent
+
+# list event.tsv
+
+events_tsv = root.glob("sub-*/func/*task-*_events.tsv")
+
+for event in events_tsv:
+    # replace "n/a" with "NaN"
+    df = pd.read_csv(event, sep="\t", na_values="n/a")
+    print(df)
+    # # remove rows with NaN in the "onset" column
+    df = df.dropna(subset=["onset"])
+    # save replacing NaN with "n/a" and with 3 decimal places
+    df.to_csv(event, sep="\t", na_rep="n/a", float_format="%.3f", index=False)

ds116/sub-01/func/sub-01_task-auditoryoddballwithbuttonresponsetotargetstimuli_run-01_events.tsv

@@ -149,5 +149,3 @@ onset	duration	trial_type	Response	Stimulus	response_time
 316.180	0.200	auditory standard stimulus presentation	0.000	standard	n/a
 318.430	0.200	auditory standard stimulus presentation	0.000	standard	n/a
 321.260	0.200	auditory standard stimulus presentation	0.000	standard	n/a
-n/a	n/a	n/a	6.728	0	standard
-n/a	n/a	n/a	8.747	0	standard

ds116/sub-01/func/sub-01_task-auditoryoddballwithbuttonresponsetotargetstimuli_run-02_events.tsv

@@ -149,6 +149,3 @@ onset	duration	trial_type	Response	Stimulus	response_time
 311.700	0.200	auditory standard stimulus presentation	0.000	standard	n/a
 314.148	0.200	auditory standard stimulus presentation	0.000	standard	n/a
 316.780	0.200	auditory standard stimulus presentation	0.000	standard	n/a
-n/a	n/a	n/a	5.492	0	standard
-n/a	n/a	n/a	7.907	0	standard
-n/a	n/a	n/a	9.942	0	standard

ds116/sub-01/func/sub-01_task-auditoryoddballwithbuttonresponsetotargetstimuli_run-03_events.tsv

@@ -149,5 +149,3 @@ onset	duration	trial_type	Response	Stimulus	response_time
 317.789	0.200	auditory standard stimulus presentation	0.000	standard	n/a
 319.824	0.200	auditory oddball stimulus presentation	1.000	target	n/a
 319.824	0.354	behavioral response time following auditory oddball stimulus onset	1.000	target	n/a
-n/a	n/a	n/a	5.857	0	standard
-n/a	n/a	n/a	8.074	0	standard

ds116/sub-01/func/sub-01_task-visualoddballwithbuttonresponsetotargetstimuli_run-01_events.tsv

@@ -149,5 +149,3 @@ onset	duration	trial_type	Response	Stimulus	response_time
 305.524	0.410	behavioral response time following visual oddball stimulus onset	1.000	target	n/a
 308.120	0.200	visual standard stimulus presentation	0.000	standard	n/a
 310.521	0.200	visual standard stimulus presentation	0.000	standard	n/a
-n/a	n/a	n/a	4.643	0	standard
-n/a	n/a	n/a	7.457	0	standard

ds116/sub-01/func/sub-01_task-visualoddballwithbuttonresponsetotargetstimuli_run-02_events.tsv

@@ -146,5 +146,3 @@ onset	duration	trial_type	Response	Stimulus	response_time
 315.391	0.200	visual standard stimulus presentation	0.000	standard	n/a
 317.593	0.200	visual standard stimulus presentation	0.000	standard	n/a
 319.594	0.200	visual standard stimulus presentation	0.000	standard	n/a
-n/a	n/a	n/a	6.371	0	standard
-n/a	n/a	n/a	8.589	0	standard

ds116/sub-01/func/sub-01_task-visualoddballwithbuttonresponsetotargetstimuli_run-03_events.tsv

@@ -148,6 +148,3 @@ onset	duration	trial_type	Response	Stimulus	response_time
 307.638	0.200	visual oddball stimulus presentation	1.000	target	n/a
 307.638	0.426	behavioral response time following visual oddball stimulus onset	1.000	target	n/a
 309.641	0.200	visual standard stimulus presentation	0.000	standard	n/a
-n/a	n/a	n/a	5.154	0	standard
-n/a	n/a	n/a	7.966	0	standard
-n/a	n/a	n/a	9.985	0	standard

ds116/sub-02/func/sub-02_task-auditoryoddballwithbuttonresponsetotargetstimuli_run-01_events.tsv

@@ -144,5 +144,3 @@ onset	duration	trial_type	Response	Stimulus	response_time
 316.764	0.200	auditory oddball stimulus presentation	1.000	target	n/a
 316.764	0.538	behavioral response time following auditory oddball stimulus onset	1.000	target	n/a
 318.817	0.200	auditory standard stimulus presentation	0.000	standard	n/a
-n/a	n/a	n/a	5.941	1	standard
-n/a	n/a	n/a	8.356	1	standard

ds116/sub-02/func/sub-02_task-auditoryoddballwithbuttonresponsetotargetstimuli_run-02_events.tsv

@@ -147,6 +147,3 @@ onset	duration	trial_type	Response	Stimulus	response_time
 315.160	0.200	auditory standard stimulus presentation	0.000	standard	n/a
 318.205	0.200	auditory standard stimulus presentation	0.000	standard	n/a
 320.654	0.200	auditory standard stimulus presentation	0.000	standard	n/a
-n/a	n/a	n/a	5.015	0	standard
-n/a	n/a	n/a	7.232	0	standard
-n/a	n/a	n/a	9.268	0	standard

ds116/sub-02/func/sub-02_task-auditoryoddballwithbuttonresponsetotargetstimuli_run-03_events.tsv

@@ -149,5 +149,3 @@ onset	duration	trial_type	Response	Stimulus	response_time
 317.538	0.200	auditory standard stimulus presentation	0.000	standard	n/a
 319.788	0.200	auditory standard stimulus presentation	0.000	standard	n/a
 322.832	0.200	auditory standard stimulus presentation	0.000	standard	n/a
-n/a	n/a	n/a	4.677	0	standard
-n/a	n/a	n/a	7.490	0	standard