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Merge remote-tracking branch 'upstream/master' into bep038
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.github/dependabot.yml

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directory: "/"
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schedule:
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interval: "weekly"
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groups:
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actions-infrastructure:
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patterns:
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- "actions/*"

.github/workflows/deploy.yml

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steps:
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- name: Checkout 🛎️
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uses: actions/checkout@v5
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- uses: actions/setup-python@v5
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- uses: actions/setup-python@v6
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with:
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python-version: "3.11"
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- name: Install and Build 🔧

.github/workflows/validate_datasets.yml

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branches: [master, main, 'bep*']
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schedule:
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- cron: "0 4 * * 1"
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workflow_dispatch:
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concurrency:
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group: ${{ github.ref }}
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- name: Set up Node.js
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if: matrix.bids-validator == 'legacy'
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uses: actions/setup-node@v4
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uses: actions/setup-node@v6
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with:
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node-version: 22
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README.md

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DO NOT EDIT DIRECTLY.
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-->
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| name | description | datatypes | suffixes | link to full data | maintained by |
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|:----------------------------------------------------------------------------|:----------------|:------------|:-----------------|:-------------------------------------------------|:---------------------------------------------|
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| [pet001](https://github.com/bids-standard/bids-examples/tree/master/pet001) | T1w, PET, blood | anat, pet | T1w, blood, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |
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| [pet002](https://github.com/bids-standard/bids-examples/tree/master/pet002) | T1w, PET | anat, pet | T1w, pet | [link](https://openneuro.org/datasets/ds001420/) | [@mnoergaard](https://github.com/mnoergaard) |
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| [pet003](https://github.com/bids-standard/bids-examples/tree/master/pet003) | T1w, PET, blood | anat, pet | T1w, blood, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |
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| [pet004](https://github.com/bids-standard/bids-examples/tree/master/pet004) | PET, blood | pet | blood, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |
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| [pet005](https://github.com/bids-standard/bids-examples/tree/master/pet005) | T1w, PET | anat, pet | T1w, events, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |
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| name | description | datatypes | suffixes | link to full data | maintained by |
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|:----------------------------------------------------------------------------|:----------------|:------------|:-----------------|:-------------------------------------------------|:-------------------------------------------------|
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| [pet001](https://github.com/bids-standard/bids-examples/tree/master/pet001) | T1w, PET, blood | anat, pet | T1w, blood, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |
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| [pet002](https://github.com/bids-standard/bids-examples/tree/master/pet002) | T1w, PET | anat, pet | T1w, pet | [link](https://openneuro.org/datasets/ds001420/) | [@mnoergaard](https://github.com/mnoergaard) |
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| [pet003](https://github.com/bids-standard/bids-examples/tree/master/pet003) | T1w, PET, blood | anat, pet | T1w, blood, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |
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| [pet004](https://github.com/bids-standard/bids-examples/tree/master/pet004) | PET, blood | pet | blood, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |
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| [pet005](https://github.com/bids-standard/bids-examples/tree/master/pet005) | T1w, PET | anat, pet | T1w, events, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |
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| [pet006](https://github.com/bids-standard/bids-examples/tree/master/pet006) | PET | pet | pet | n/a | [@bendhouseart](https://github.com/bendhouseart) |
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### qMRI
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dataset_listing.tsv

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pet003 T1w, PET, blood [@mnoergaard](https://github.com/mnoergaard) anat, pet T1w, blood, pet
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pet004 PET, blood [@mnoergaard](https://github.com/mnoergaard) pet blood, pet
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pet005 T1w, PET [@mnoergaard](https://github.com/mnoergaard) anat, pet T1w, events, pet
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pet006 PET [@bendhouseart](https://github.com/bendhouseart) pet pet
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micr_SEM Example SEM dataset in PNG format with 1 sample imaged over 2 sessions [link](https://doi.org/10.5281/zenodo.5498378) [@jcohenadad](https://github.com/jcohenadad) micr SEM, photo, samples, sessions
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micr_SEMzarr Example SEM dataset in PNG and OME-ZARR format with 1 sample imaged over 2 sessions [@TheChymera](https://github.com/TheChymera) micr SEM, SPIM, samples, sessions
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micr_SPIM Example SPIM dataset in OME-TIFF format with 2 samples from the same subject with 4 chunks each [link](https://doi.org/10.5281/zenodo.5517223) [@jcohenadad](https://github.com/jcohenadad) micr SPIM, photo, samples

eeg_ds003645s_hed_demo/sub-004/ses-1/eeg/sub-004_ses-1_task-FacePerception_run-1_events.tsv

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onset duration event_type face_type rep_status rep_lag trial value stim_file
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24.26672727 n/a show_face_initial scrambled_face first_show n/a 1 4 s107.bmp
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24.26672727 n/a show_face_initial scrambled_face first_show n/a 1 17 s107.bmp
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25.11309091 n/a show_circle n/a n/a n/a 1 0 circle.bmp
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25.28036364 n/a right_press n/a n/a n/a 1 4096 n/a
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26.81309091 n/a show_cross n/a n/a n/a 2 1 cross.bmp

eeg_ds003645s_hed_demo/task-FacePerception_events.json

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"value": {
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"Description": "Numerical event marker",
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"Levels": {
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"x0": "Disappearance of face image and display of the inter-stimulus circle simultaneously",
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"x1": "Disappearance of face image and display of the inter-stimulus circle simultaneously",
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"x2": "Initial setup with left finger key press indicating above average symmetry",
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"x3": "Initial setup with right finger key press indicating above average symmetry",
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"x5": "Initial presentation of famous face",
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"x6": "Immediate repeated presentation of famous face",
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"x7": "Delayed repeated presentation of famous face",
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"x13": "Initial presentation of unfamiliar face",
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"x14": "Immediate repeated presentation of unfamiliar face",
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"x15": "Delayed repeated presentation of unfamiliar face",
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"x17": "Initial presentation of scrambled face",
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"x18": "Immediate repeated presentation of scrambled face",
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"x19": "Delayed repeated presentation of scrambled face",
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"x256": "Left finger key press",
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"x4096": "Right finger key press",
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"x4352": "Left and right finger key presses"
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"0": "Disappearance of face image and display of the inter-stimulus circle simultaneously",
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"1": "Disappearance of face image and display of the inter-stimulus circle simultaneously",
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"2": "Initial setup with left finger key press indicating above average symmetry",
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"3": "Initial setup with right finger key press indicating above average symmetry",
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"5": "Initial presentation of famous face",
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"6": "Immediate repeated presentation of famous face",
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"7": "Delayed repeated presentation of famous face",
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"13": "Initial presentation of unfamiliar face",
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"14": "Immediate repeated presentation of unfamiliar face",
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"15": "Delayed repeated presentation of unfamiliar face",
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"17": "Initial presentation of scrambled face",
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"18": "Immediate repeated presentation of scrambled face",
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"19": "Delayed repeated presentation of scrambled face",
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"256": "Left finger key press",
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"4096": "Right finger key press",
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"4352": "Left and right finger key presses"
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}
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}
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}

eeg_ds003645s_hed_library/task-FacePerception_events.json

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}
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},
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"hed_def_setup": {
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"Description": "Metadata dictionary for gathering setup definitions",
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"HED": {
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"setup_def": "(Definition/Initialize-recording, (Recording))"
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}
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"Description": "Metadata dictionary for gathering setup definitions",
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"HED": {
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"setup_def": "(Definition/Initialize-recording, (Recording))"
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}
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},
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"value": {
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"Description": "Numerical event marker",
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"Levels": {
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"x0": "Disappearance of face image and display of the inter-stimulus circle simultaneously",
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"x1": "Disappearance of face image and display of the inter-stimulus circle simultaneously",
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"x2": "Initial setup with left finger key press indicating above average symmetry",
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"x3": "Initial setup with right finger key press indicating above average symmetry",
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"x5": "Initial presentation of famous face",
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"x6": "Immediate repeated presentation of famous face",
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"x7": "Delayed repeated presentation of famous face",
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"x13": "Initial presentation of unfamiliar face",
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"x14": "Immediate repeated presentation of unfamiliar face",
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"x15": "Delayed repeated presentation of unfamiliar face",
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"x17": "Initial presentation of scrambled face",
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"x18": "Immediate repeated presentation of scrambled face",
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"x19": "Delayed repeated presentation of scrambled face",
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"x256": "Left finger key press",
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"x4096": "Right finger key press",
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"x4352": "Left and right finger key presses"
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"0": "Disappearance of face image and display of the inter-stimulus circle simultaneously",
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"1": "Disappearance of face image and display of the inter-stimulus circle simultaneously",
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"2": "Initial setup with left finger key press indicating above average symmetry",
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"3": "Initial setup with right finger key press indicating above average symmetry",
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"5": "Initial presentation of famous face",
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"6": "Immediate repeated presentation of famous face",
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"7": "Delayed repeated presentation of famous face",
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"13": "Initial presentation of unfamiliar face",
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"14": "Immediate repeated presentation of unfamiliar face",
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"15": "Delayed repeated presentation of unfamiliar face",
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"17": "Initial presentation of scrambled face",
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"18": "Immediate repeated presentation of scrambled face",
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"19": "Delayed repeated presentation of scrambled face",
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"256": "Left finger key press",
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"4096": "Right finger key press",
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"4352": "Left and right finger key presses"
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}
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}

eeg_rishikesh/task-meditation_events.json

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"Description": "Type of event (different from EEGLAB convention)",
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"response": "Response to question 1, 2 or 3",
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"STATUS": "Status event"
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"response_time": {
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"128": "First question onset (most important marker)",
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"254": "Status event"
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fnirs_automaticity/events.json

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},
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"shown_stimulus": {
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"Description": "visual stimulus shown on the presentation screen",
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"Levels": {
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"white X": "small white fixation cross on the middle of the screen, indicating that the participant should relax and focus on the cross. At the beginning of a trial, a metronome sound of 1.5 Hz was played during the first 8 seconds of the white fixation cross.",
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"red X": "small red fixation cross in the middle of the screen, indicating that the participant should start tapping/stepping the sequence (once) during the single-task conditions",
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"QGCQOGCG": "random sequence of 8 letters (C, G, Q, or O) shown at random intervals (0.5-1.5 s) on the middle of the screen during the dual-task conditions. Participants needed to tap/step the sequence once, while simultaneously counting the letter G."
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"Format": "string"
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"reported_gs": {
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}
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}

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