Dataset description

Author: bclenet

provenance_manual/README.md

@@ -1,7 +1,5 @@
 # Provenance of manual brain segmentations
 
-https://www.itksnap.org/pmwiki/pmwiki.php?n=Main.HomePage
-
 ## Goal
 
 This example aims at showing provenance metadata for a study dataset in which several experts performed manual brain segmentations from the same T1w file.
@@ -12,7 +10,37 @@ This example aims at showing provenance metadata for a study dataset in which se
 > Note that the `docs/` directory contains explanatory data (see [Provenance as a RDF graph](#provenance-as-a-rdf-graph)) that is not required to encode provenance.
 
 ```
-
+.
+├── dataset_description.json
+├── derivatives
+│   └── segmentations
+│       ├── dataset_description.json
+│       └── sub-001
+│           └── anat
+│               ├── sub-001_space-orig_desc-exp1_dseg.json
+│               ├── sub-001_space-orig_desc-exp1_dseg.nii.gz
+│               ├── sub-001_space-orig_desc-exp2_dseg.json
+│               ├── sub-001_space-orig_desc-exp2_dseg.nii.gz
+│               ├── sub-001_space-orig_desc-exp3_dseg.json
+│               └── sub-001_space-orig_desc-exp3_dseg.nii.gz
+├── docs
+│   └── prov.jsonld
+├── prov
+│   ├── provenance.tsv
+│   ├── prov-seg1_act.json
+│   ├── prov-seg1_soft.json
+│   ├── prov-seg2_act.json
+│   ├── prov-seg2_soft.json
+│   ├── prov-seg3_act.json
+│   └── prov-seg3_soft.json
+├── README.md
+└── sourcedata
+    └── raw
+        ├── participants.tsv
+        └── sub-001
+            └── anat
+                ├── sub-001_T1w.json
+                └── sub-001_T1w.nii.gz
 ```
 
 ## Provenance as a RDF graph

provenance_manual/dataset_description.json

@@ -1,5 +1,5 @@
 {
-  "Name": "Outputs from fMRIPrep preprocessing of the NARPS data",
+  "Name": "Brain segmentations from 3 experts",
   "BIDSVersion": "1.10.0",
   "DatasetType": "study",
   "License": "CC0",
@@ -9,12 +9,5 @@
   "DatasetLinks": {
     "raw": "sourcedata/raw/",
     "segmentations": "derivatives/segmentations/",
-    "ds001734": "https://openneuro.org/datasets/ds001734/versions/1.0.5"
-  },
-  "SourceDatasets": [
-    {
-      "URL": "ds001734",
-      "Version": "1.0.5"
-    }
-  ]
+  }
 }

provenance_manual/sourcedata/raw/dataset_description.json

@@ -0,0 +1,9 @@
+{
+  "Name": "T1w image for one participant",
+  "BIDSVersion": "1.10.0",
+  "DatasetType": "raw",
+  "License": "CC0",
+  "Authors": [
+    "Boris Clénet"
+  ]
+}