Merge pull request #241 from effigies/upgrade-schema

chore: Upgrade schema for dev validator

Author: effigies

deno.json

@@ -28,7 +28,7 @@
   },
   "imports": {
     "@ajv": "npm:[email protected]",
-    "@bids/schema": "jsr:@bids/schema@^1.1.0-dev.16+a7dd34ad",
+    "@bids/schema": "jsr:@bids/schema@~1.1.0-dev.43+135cc18d",
     "@cliffy/command": "jsr:@effigies/[email protected]",
     "@cliffy/table": "jsr:@effigies/[email protected]",
     "@hed/validator": "npm:[email protected]",

deno.lock

@@ -336,22 +336,6 @@ export class BIDSContext implements Context {
         'participant_id'
       ] as string[]
     }
-
-    // Load phenotype from phenotype/*.tsv
-    const phenotype_dir = this.dataset.tree.get('phenotype') as FileTree
-    if (phenotype_dir) {
-      const phenotypeFiles = phenotype_dir.files.filter((file) => file.name.endsWith('.tsv'))
-      // Collect observed participant_ids
-      const seen = new Set() as Set<string>
-      for (const file of phenotypeFiles) {
-        const phenotypeData = await loadTSV(file)
-        const participant_id = phenotypeData['participant_id'] as string[]
-        if (participant_id) {
-          participant_id.forEach((id) => seen.add(id))
-        }
-      }
-      this.dataset.subjects.phenotype = Array.from(seen)
-    }
   }
 
   async asyncLoads() {

src/schema/context.ts

@@ -93,8 +93,8 @@ Deno.test('test hasMatch', async (t) => {
     const file = new BIDSFileDeno(path, fileName, ignore)
     const context = new BIDSContext(file)
     context.filenameRules = [
-      'rules.files.raw.task.events__mri',
-      'rules.files.raw.task.events__pet',
+      'rules.files.raw.events.events__mri',
+      'rules.files.raw.events.events__pet',
     ]
     await hasMatch(schema, context)
     assertEquals(context.filenameRules.length, 2)