Merge pull request #2165 from rwblair/legacy_fix_anat_physio

add continous regex for anatomical datatype to file_level_rules.json

Author: effigies

bids-validator/bids_validator/rules/file_level_rules.json

@@ -141,6 +141,17 @@
       "@@@_anat_ext_@@@": ["nii\\.gz", "nii", "json"]
     }
   },
+  "anat_cont": {
+    "regexp": "^[\\/\\\\](sub-[a-zA-Z0-9]+)[\\/\\\\](?:(ses-[a-zA-Z0-9]+)[\\/\\\\])?anat[\\/\\\\]\\1(_\\2)?(?:_task-[a-zA-Z0-9]+)?(?:_acq-[a-zA-Z0-9]+)?(?:_ce-[a-zA-Z0-9]+)?(?:_rec-[a-zA-Z0-9]+)?(?:_run-[0-9]+)?(?:_echo-[0-9]+)?(?:_part-(imag|mag|phase|real))?(?:_recording-[a-zA-Z0-9]+)?(?:_chunk-[0-9]+)?(?:@@@_cont_ext_@@@)$",
+    "tokens": {
+      "@@@_cont_ext_@@@": [
+        "_physio\\.tsv\\.gz",
+        "_stim\\.tsv\\.gz",
+        "_physio\\.json",
+        "_stim\\.json"
+      ]
+    }
+  },
 
   "behavioral": {
     "regexp": "^[\\/\\\\](sub-[a-zA-Z0-9]+)[\\/\\\\](?:(ses-[a-zA-Z0-9]+)[\\/\\\\])?beh[\\/\\\\]\\1(_\\2)?_task-[a-zA-Z0-9]+(?:_acq-[a-zA-Z0-9]+)?(?:_run-[0-9]+)?((?:@@@_behavioral_ext_@@@)|(?:_recording-[a-zA-Z0-9]+)?(?:@@@_cont_ext_@@@))$",

bids-validator/utils/type.js

@@ -29,6 +29,7 @@ const anatMultiInv = buildRegExp(file_level_rules.anat_multiinv)
 const anatMP2RAGE = buildRegExp(file_level_rules.anat_mp2rage)
 const anatVFAMT = buildRegExp(file_level_rules.anat_vfa_mt)
 const anatMTR = buildRegExp(file_level_rules.anat_mtr)
+const anatCont = buildRegExp(file_level_rules.anat_cont)
 const behavioralData = buildRegExp(file_level_rules.behavioral)
 const dwiData = buildRegExp(file_level_rules.dwi)
 const eegData = buildRegExp(file_level_rules.eeg)
@@ -242,7 +243,8 @@ export default {
         conditionalMatch(anatMultiInv, path) ||
         conditionalMatch(anatMP2RAGE, path) ||
         conditionalMatch(anatVFAMT, path) ||
-        conditionalMatch(anatMTR, path)
+        conditionalMatch(anatMTR, path) ||
+        conditionalMatch(anatCont, path)
       )
     },