precommit fixes

Remi-Gau · Remi-Gau · commit 4a64105a3344 · 2024-10-12T12:16:28.000+02:00
diff --git a/data/people/advisory.yml b/data/people/advisory.yml
@@ -101,7 +101,7 @@
         git: william_clarke
     -   name: Martin Wilson
         git: martin_wilson
-    
+
 # - title: BEP025 Medical Imaging Data Structure (MIDS)
 #   not included for now, as not merged into BIDS specification
 
diff --git a/data/working_groups.yml b/data/working_groups.yml
@@ -35,7 +35,7 @@
 #     url:
 #     chairs:
 #     -   name:
-#         email: 
+#         email:
 #     status: active
 
 -   title: Code of conducts amendments
diff --git a/docs/blog/posts/bids-news-september-2024.md b/docs/blog/posts/bids-news-september-2024.md
@@ -16,8 +16,8 @@ The BIDS Maintainers, Steering Group, working groups, and other contributors hav
 
 The BIDS specification has released a new minor version\! The highlights are:
 
-* Integrating BEP022 for Magnetic Resonance Spectroscopy  
-* Publishing the BIDS schema to [JavaScript Registry](https://jsr.io/@bids/schema)  
+* Integrating BEP022 for Magnetic Resonance Spectroscopy
+* Publishing the BIDS schema to [JavaScript Registry](https://jsr.io/@bids/schema)
 * For the full list of changes, you can read [the changelog](https://bids-specification.readthedocs.io/en/stable/CHANGES.html#v1100-2024-09-06)
 
 ## Schema-based BIDS validator deployed on validator site
@@ -46,9 +46,9 @@ BIDS continues to be featured in different venues. Our very own maintainer extra
 
 The BEPs carry on to help us all update the standard with new and previously unestablished data types and improvements. If there's a BEP here that affects you, consider getting involved by commenting on open Google Docs or GitHub pull requests or contacting the leads listed in the BEP. Here’s some of our newest BEPs.
 
-* [BEP041](https://bids.neuroimaging.io/bep041): Statistical Model (Taylor Salo)  
-* [BEP042](https://bids.neuroimaging.io/bep042): Electromyography (Seyed Yahya Shirazi)  
-* [BEP043](https://bids.neuroimaging.io/bep043): Term mapping (Chris Markiewicz & Eric Earl)  
+* [BEP041](https://bids.neuroimaging.io/bep041): Statistical Model (Taylor Salo)
+* [BEP042](https://bids.neuroimaging.io/bep042): Electromyography (Seyed Yahya Shirazi)
+* [BEP043](https://bids.neuroimaging.io/bep043): Term mapping (Chris Markiewicz & Eric Earl)
 * [BEP044](https://bids.neuroimaging.io/bep044): Stimuli (Seyed Yahya Shirazi)
 
 Other BEPs are listed on [the BIDS website](https://bids-website.readthedocs.io/en/latest/extensions/beps.html).
diff --git a/docs/collaboration/index.md b/docs/collaboration/index.md
@@ -1,6 +1,6 @@
 # Help make BIDS better!
 
-BIDS is informed, supported, and guided by its users. BIDS standards are intended to change and evolve as methods, resources, and the needs of the BIDS community changes. We encourage all researchers to contribute to the ongoing development of BIDS standards, be it through discussion on websites, the creation of new BIDS tools, or contributing to extending the BIDS specification through proposals. Below is a list of common resources where users can get involved in making the BIDS standard better! 
+BIDS is informed, supported, and guided by its users. BIDS standards are intended to change and evolve as methods, resources, and the needs of the BIDS community changes. We encourage all researchers to contribute to the ongoing development of BIDS standards, be it through discussion on websites, the creation of new BIDS tools, or contributing to extending the BIDS specification through proposals. Below is a list of common resources where users can get involved in making the BIDS standard better!
 
 <u>Neurostars Website</u>
 
diff --git a/docs/getting_started/folders_and_files/files.md b/docs/getting_started/folders_and_files/files.md
@@ -736,4 +736,4 @@ in which case those values are listed in <code>&lt;&gt;</code>, separated by <co
 </ul>
 
 </details>
-<!-- MICR TEMPLATE ENDS HERE: do not edit manually -->
+<!-- MICR TEMPLATE ENDS HERE: do not edit manually -->
diff --git a/docs/getting_started/folders_and_files/index.md b/docs/getting_started/folders_and_files/index.md
@@ -1,4 +1,4 @@
 # BIDS Folders and Files
 
 A BIDS dataset consists of a collection of folders and files that are organized and named in compliance with the BIDS specification.
-The following sections provide more information on how to properly organize and name your data. 
+The following sections provide more information on how to properly organize and name your data.
diff --git a/docs/getting_started/index.md b/docs/getting_started/index.md
@@ -1,5 +1,5 @@
 # Unsure how to get started using BIDS with your current data?
 
-BIDS, at its core, is a set of guidelines for naming and organizing neuroimaging files that is intended to standardize many processes in neuroimaging research and foster a data ecosystem that makes collaboration and data sharing easy. For newcomers to BIDS standards, getting used to these file standards can be overwhelming, especially when considering organizational changes and file edits that are needed to convert datasets into BIDS format. 
+BIDS, at its core, is a set of guidelines for naming and organizing neuroimaging files that is intended to standardize many processes in neuroimaging research and foster a data ecosystem that makes collaboration and data sharing easy. For newcomers to BIDS standards, getting used to these file standards can be overwhelming, especially when considering organizational changes and file edits that are needed to convert datasets into BIDS format.
 
-The following resources were developed to help newcomers to the BIDS standards learn how BIDS data are organized, provide information through publications and presentations, and provide a set of tutorials that are intended to help you get started using BIDS. 
+The following resources were developed to help newcomers to the BIDS standards learn how BIDS data are organized, provide information through publications and presentations, and provide a set of tutorials that are intended to help you get started using BIDS.
diff --git a/docs/getting_started/resources/index.md b/docs/getting_started/resources/index.md
@@ -1,7 +1,7 @@
 # BIDS Resources
 
-The following collection of resources have been compiled to help you get started with BIDS. 
-The links section has links to software tools for working with BIDS datasets. 
+The following collection of resources have been compiled to help you get started with BIDS.
+The links section has links to software tools for working with BIDS datasets.
 The glossary section has explanations of common BIDS "jargon".
 The dependencies section provides an overview of software and programming languages commonly used with BIDS.
-The talks and slides page has links to some recent presentations about using BIDS file organization and BIDS tools. 
+The talks and slides page has links to some recent presentations about using BIDS file organization and BIDS tools.
diff --git a/docs/getting_started/resources/talks.md b/docs/getting_started/resources/talks.md
@@ -1,6 +1,6 @@
 # Talks and slides
 
-BIDS-related talks and presentations are ongoing. 
+BIDS-related talks and presentations are ongoing.
 Two great resources for curated lists of talks and slides are:
 
 -   [on this project on OSF](https://osf.io/yn93h/)
diff --git a/docs/getting_started/tutorials/conversion/index.md b/docs/getting_started/tutorials/conversion/index.md
@@ -1,4 +1,4 @@
 # BIDS Conversion
 
-We know that converting datasets to BIDS organization comes with some challenges, including file reorganization and renaming. 
-The following guides can help. 
+We know that converting datasets to BIDS organization comes with some challenges, including file reorganization and renaming.
+The following guides can help.
diff --git a/docs/getting_started/tutorials/index.md b/docs/getting_started/tutorials/index.md
@@ -1,8 +1,8 @@
 # Tutorials
 
-Many BIDS tutorials have been created by the greater BIDS community and a selection are linked here. 
-We aim to add more high-quality tutorials to this list as new tutorials are created and the maintainers become aware of them. 
-Let us know about tutorials that are missing from this list by submitting a [request on github](https://github.com/bids-standard/bids-website/issues) to add them to this website.  
+Many BIDS tutorials have been created by the greater BIDS community and a selection are linked here.
+We aim to add more high-quality tutorials to this list as new tutorials are created and the maintainers become aware of them.
+Let us know about tutorials that are missing from this list by submitting a [request on github](https://github.com/bids-standard/bids-website/issues) to add them to this website.
 
 ## Video tutorials
 
diff --git a/docs/standards/bids_app_specification/contributors.md b/docs/standards/bids_app_specification/contributors.md
@@ -1,6 +1,6 @@
 # Contributing
 
-The following list of contributors have donated countless hours to the development of BIDS standards and BIDS Apps. If you would like to get involved and are able to donate time to advancing the BIDS standards, please look into submitting or contributing a current BIDS Extension Proposal [BEPs](/extensions/index.html) or contact one of the contributors below. 
+The following list of contributors have donated countless hours to the development of BIDS standards and BIDS Apps. If you would like to get involved and are able to donate time to advancing the BIDS standards, please look into submitting or contributing a current BIDS Extension Proposal [BEPs](/extensions/index.html) or contact one of the contributors below.
 
 ## Lead Contributors
 
diff --git a/docs/standards/index.md b/docs/standards/index.md
@@ -1,3 +1,3 @@
 # BIDS Standards
 
-The current set of BIDS Standards provide outlines and guidance for file naming and organization, statistical modeling of neuroimaging data, and applications created to be used with BIDS data. These standards are intended to be updated and evolve as methods and data types change, but current documentation on BIDS standards can be found in the sections below. 
+The current set of BIDS Standards provide outlines and guidance for file naming and organization, statistical modeling of neuroimaging data, and applications created to be used with BIDS data. These standards are intended to be updated and evolve as methods and data types change, but current documentation on BIDS standards can be found in the sections below.
diff --git a/docs/tools/bids-apps.md b/docs/tools/bids-apps.md
@@ -1,5 +1,5 @@
 # BIDS Apps
 
-BIDS Apps are typically docker or singularity images that allow you to seamlessly run many applications without the need to installing all dependencies, and are generally guaranteed to run on your data, provided your data is BIDS compliant. Below is a list of many commonly used BIDS Apps. 
+BIDS Apps are typically docker or singularity images that allow you to seamlessly run many applications without the need to installing all dependencies, and are generally guaranteed to run on your data, provided your data is BIDS compliant. Below is a list of many commonly used BIDS Apps.
 
 {{ MACROS___generate_apps_table() }}
diff --git a/docs/tools/converters/index.md b/docs/tools/converters/index.md
@@ -1,3 +1,3 @@
 # Converters
 
-The following list of converters is provided to help you convert your raw data into a BIDS compliant dataset. 
+The following list of converters is provided to help you convert your raw data into a BIDS compliant dataset.
diff --git a/docs/tools/converters/meeg.md b/docs/tools/converters/meeg.md
@@ -1,5 +1,5 @@
 #MEEG
-The following list of converters can help you convert EEG, MEG, and iEEG data into BIDS compliant datasets. 
+The following list of converters can help you convert EEG, MEG, and iEEG data into BIDS compliant datasets.
 
 
 {{ MACROS___generate_converter_table(file="MEEG_converters.yml") }}
diff --git a/docs/tools/converters/mri-pet.md b/docs/tools/converters/mri-pet.md
@@ -1,4 +1,4 @@
 #MRI and PET
-The following list of converters can help you convert MRI and PET data into BIDS compliant datasets. 
+The following list of converters can help you convert MRI and PET data into BIDS compliant datasets.
 
 {{ MACROS___generate_converter_table(file="converters.yml") }}
diff --git a/docs/tools/converters/others.md b/docs/tools/converters/others.md
@@ -1,6 +1,6 @@
 # Other converters
 
-The following tools can help you with miscelaneous tasks that may require you to convert to and from BIDS to work with certain, specific tools. These tools are very workflow specific and may not apply to the majority of projects. 
+The following tools can help you with miscellaneous tasks that may require you to convert to and from BIDS to work with certain, specific tools. These tools are very workflow specific and may not apply to the majority of projects.
 
 {{ MACROS___generate_converter_table(file="from_BIDS_converters.yml") }}
 
diff --git a/docs/tools/converters/physio.md b/docs/tools/converters/physio.md
@@ -1,4 +1,4 @@
 #Physio Data
-The following list of converters can help you convert physiological data into BIDS compliant datasets. 
+The following list of converters can help you convert physiological data into BIDS compliant datasets.
 
 {{ MACROS___generate_converter_table(file="physio_converters.yml") }}
diff --git a/docs/tools/index.md b/docs/tools/index.md
@@ -4,7 +4,7 @@ There is a rich ecosystem of tools to help you work with BIDS datasets.
 
 - Converters: There are many [converters](./converters/index.md)
 to help you go from your sourcedata to have a BIDS dataset.
-- BIDS Validator: The [BIDS validator](./validator.md) is there to ensure that your BIDS dataset is valid and will work with BIDS Apps without any obvious issues. 
+- BIDS Validator: The [BIDS validator](./validator.md) is there to ensure that your BIDS dataset is valid and will work with BIDS Apps without any obvious issues.
 - BIDS Apps: You can use [BIDS apps](./bids-apps.md)
 (automated pipelines that can be used as Docker or Apptainer images)
 to process your BIDS datasets.
