diff --git a/.remarkrc b/.remarkrc index c37bf64f..a4f109b7 100644 --- a/.remarkrc +++ b/.remarkrc @@ -1,18 +1,29 @@ { + "settings": { + "bullet": "-", + "commonmark": true, + "emphasis": "*", + "fences": true, + "incrementListMarker": false, + "listItemIndent": "tab", + "rule": "-", + "strong": "*" + }, "plugins": [ "preset-lint-markdown-style-guide", "preset-lint-recommended", "remark-gfm", - ["lint-no-duplicate-headings", false], - ["lint-list-item-indent", "tab"], ["lint-emphasis-marker", "consistent"], + ["lint-list-item-indent", "tab"], ["lint-maximum-line-length", 500], ["lint-maximum-heading-length", false], + ["lint-no-duplicate-headings", false], ["lint-no-shortcut-reference-link", false], - ["remark-lint-unordered-list-marker-style", "-"], ["lint-no-trailing-spaces"], - ["remark-lint-code-block-style", false], ["lint-no-undefined-references", false], - ["remark-lint-heading-style", false] + ["remark-lint-code-block-style", false], + ["remark-lint-heading-style", false], + ["remark-lint-list-item-spacing", 1], + ["remark-lint-unordered-list-marker-style", "-"] ] } diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 508f6c62..91f9e8d3 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -88,6 +88,17 @@ tox make remark ``` +### Using remark to format a file + +If you have a completely new file that you want to lint, +you can use the following to get most of the markdown formatting done. + +Some will still need some manual work. + +```bash +npm run format -- path_to_file --ouput +``` + ## Upgrading dependencies Rerun `uv sync`: diff --git a/docs/blog/posts/2021-08-12-steering-group-minutes.md b/docs/blog/posts/2021-08-12-steering-group-minutes.md index 78f5600b..0c1bea32 100644 --- a/docs/blog/posts/2021-08-12-steering-group-minutes.md +++ b/docs/blog/posts/2021-08-12-steering-group-minutes.md @@ -2,6 +2,8 @@ date: 2021-08-12 slug: Steering Group minutes author: anonymous +categories: +- steering group minutes --- diff --git a/docs/blog/posts/2021-11-04-steering-group-minutes.md b/docs/blog/posts/2021-11-04-steering-group-minutes.md index 3b559ee8..0ad4df83 100644 --- a/docs/blog/posts/2021-11-04-steering-group-minutes.md +++ b/docs/blog/posts/2021-11-04-steering-group-minutes.md @@ -2,6 +2,8 @@ date: 2021-11-04 slug: Steering Group minutes author: anonymous +categories: +- steering group minutes --- diff --git a/docs/blog/posts/2021-12-14-steering-group-minutes.md b/docs/blog/posts/2021-12-14-steering-group-minutes.md index 5364c75b..5517d3d6 100644 --- a/docs/blog/posts/2021-12-14-steering-group-minutes.md +++ b/docs/blog/posts/2021-12-14-steering-group-minutes.md @@ -2,6 +2,8 @@ date: 2021-12-14 slug: Steering Group minutes author: anonymous +categories: +- steering group minutes --- diff --git a/docs/blog/posts/2022-01-06-steering-group-minutes.md b/docs/blog/posts/2022-01-06-steering-group-minutes.md index 394978cb..fc4efa74 100644 --- a/docs/blog/posts/2022-01-06-steering-group-minutes.md +++ b/docs/blog/posts/2022-01-06-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2022-01-06 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2022-01-27-steering-group-minutes.md b/docs/blog/posts/2022-01-27-steering-group-minutes.md index 6133ca57..d586d2e4 100644 --- a/docs/blog/posts/2022-01-27-steering-group-minutes.md +++ b/docs/blog/posts/2022-01-27-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2022-01-27 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2022-02-17-steering-group-minutes.md b/docs/blog/posts/2022-02-17-steering-group-minutes.md index cbe32fdd..adff93ce 100644 --- a/docs/blog/posts/2022-02-17-steering-group-minutes.md +++ b/docs/blog/posts/2022-02-17-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2022-02-17 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2022-03-10-steering-group-minutes.md b/docs/blog/posts/2022-03-10-steering-group-minutes.md index ad104e72..10627e57 100644 --- a/docs/blog/posts/2022-03-10-steering-group-minutes.md +++ b/docs/blog/posts/2022-03-10-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2022-03-10 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2022-03-31-steering-group-minutes.md b/docs/blog/posts/2022-03-31-steering-group-minutes.md index 47c91bcd..f175e11c 100644 --- a/docs/blog/posts/2022-03-31-steering-group-minutes.md +++ b/docs/blog/posts/2022-03-31-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2022-03-31 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2022-06-02-steering-group-minutes.md b/docs/blog/posts/2022-06-02-steering-group-minutes.md index def0e53b..1deea7cb 100644 --- a/docs/blog/posts/2022-06-02-steering-group-minutes.md +++ b/docs/blog/posts/2022-06-02-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2022-06-02 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2022-07-14-steering-group-minutes.md b/docs/blog/posts/2022-07-14-steering-group-minutes.md index 6ead60ce..4d5c9662 100644 --- a/docs/blog/posts/2022-07-14-steering-group-minutes.md +++ b/docs/blog/posts/2022-07-14-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2022-07-14 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2022-10-27-steering-group-minutes.md b/docs/blog/posts/2022-10-27-steering-group-minutes.md index d206482c..4358f492 100644 --- a/docs/blog/posts/2022-10-27-steering-group-minutes.md +++ b/docs/blog/posts/2022-10-27-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2022-10-27 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2022-11-17-steering-group-minutes.md b/docs/blog/posts/2022-11-17-steering-group-minutes.md index 32a33968..36d46371 100644 --- a/docs/blog/posts/2022-11-17-steering-group-minutes.md +++ b/docs/blog/posts/2022-11-17-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2022-11-17 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2022-12-08-steering-group-minutes.md b/docs/blog/posts/2022-12-08-steering-group-minutes.md index cd0aeead..5eaba80e 100644 --- a/docs/blog/posts/2022-12-08-steering-group-minutes.md +++ b/docs/blog/posts/2022-12-08-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2022-12-08 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2023-01-19-steering-group-minutes.md b/docs/blog/posts/2023-01-19-steering-group-minutes.md index f126ee82..7b16bd65 100644 --- a/docs/blog/posts/2023-01-19-steering-group-minutes.md +++ b/docs/blog/posts/2023-01-19-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2023-01-19 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2023-02-09-steering-group-minutes.md b/docs/blog/posts/2023-02-09-steering-group-minutes.md index ad44ce50..654ea69f 100644 --- a/docs/blog/posts/2023-02-09-steering-group-minutes.md +++ b/docs/blog/posts/2023-02-09-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2023-02-09 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2023-03-02-steering-group-minutes.md b/docs/blog/posts/2023-03-02-steering-group-minutes.md index 02cf7a41..13aaec03 100644 --- a/docs/blog/posts/2023-03-02-steering-group-minutes.md +++ b/docs/blog/posts/2023-03-02-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2023-03-02 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2023-03-23-steering-group-minutes.md b/docs/blog/posts/2023-03-23-steering-group-minutes.md index 2bf4f5a9..6da70c1e 100644 --- a/docs/blog/posts/2023-03-23-steering-group-minutes.md +++ b/docs/blog/posts/2023-03-23-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2023-03-23 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2023-04-13-steering-group-minutes.md b/docs/blog/posts/2023-04-13-steering-group-minutes.md index eaf26a67..95a6491d 100644 --- a/docs/blog/posts/2023-04-13-steering-group-minutes.md +++ b/docs/blog/posts/2023-04-13-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2023-04-13 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2023-05-25-steering-group-minutes.md b/docs/blog/posts/2023-05-25-steering-group-minutes.md index 01700cb7..2060a5d3 100644 --- a/docs/blog/posts/2023-05-25-steering-group-minutes.md +++ b/docs/blog/posts/2023-05-25-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2023-05-25 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2023-06-15-steering-group-minutes.md b/docs/blog/posts/2023-06-15-steering-group-minutes.md index 4e102c24..c4ccdc17 100644 --- a/docs/blog/posts/2023-06-15-steering-group-minutes.md +++ b/docs/blog/posts/2023-06-15-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2023-06-15 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2023-07-27-steering-group-minutes.md b/docs/blog/posts/2023-07-27-steering-group-minutes.md index a202be49..632db442 100644 --- a/docs/blog/posts/2023-07-27-steering-group-minutes.md +++ b/docs/blog/posts/2023-07-27-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2023-07-27 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2023-08-17-steering-group-minutes.md b/docs/blog/posts/2023-08-17-steering-group-minutes.md index 7a108f67..33b0dd38 100644 --- a/docs/blog/posts/2023-08-17-steering-group-minutes.md +++ b/docs/blog/posts/2023-08-17-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2023-08-17 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2023-09-07-steering-group-minutes.md b/docs/blog/posts/2023-09-07-steering-group-minutes.md index e3564b01..fd91fa59 100644 --- a/docs/blog/posts/2023-09-07-steering-group-minutes.md +++ b/docs/blog/posts/2023-09-07-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2023-09-07 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2023-09-28-steering-group-minutes.md b/docs/blog/posts/2023-09-28-steering-group-minutes.md index a9d67fde..ad4c0a5d 100644 --- a/docs/blog/posts/2023-09-28-steering-group-minutes.md +++ b/docs/blog/posts/2023-09-28-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2023-09-28 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2023-10-19-steering-group-minutes.md b/docs/blog/posts/2023-10-19-steering-group-minutes.md index 23e797a2..11baa7cf 100644 --- a/docs/blog/posts/2023-10-19-steering-group-minutes.md +++ b/docs/blog/posts/2023-10-19-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2023-10-19 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2023-11-09-steering-group-minutes.md b/docs/blog/posts/2023-11-09-steering-group-minutes.md index e0d9b42e..451432c1 100644 --- a/docs/blog/posts/2023-11-09-steering-group-minutes.md +++ b/docs/blog/posts/2023-11-09-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2023-11-09 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2023-11-30-steering-group-minutes.md b/docs/blog/posts/2023-11-30-steering-group-minutes.md index db23ee70..2d6dbb49 100644 --- a/docs/blog/posts/2023-11-30-steering-group-minutes.md +++ b/docs/blog/posts/2023-11-30-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2023-11-30 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2024-01-11-steering-group-minutes.md b/docs/blog/posts/2024-01-11-steering-group-minutes.md index f6ba3ec7..420fe545 100644 --- a/docs/blog/posts/2024-01-11-steering-group-minutes.md +++ b/docs/blog/posts/2024-01-11-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2024-01-11 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2024-02-01-steering-group-minutes.md b/docs/blog/posts/2024-02-01-steering-group-minutes.md index 016c121d..dbb7ffc7 100644 --- a/docs/blog/posts/2024-02-01-steering-group-minutes.md +++ b/docs/blog/posts/2024-02-01-steering-group-minutes.md @@ -2,6 +2,9 @@ date: 2024-02-01 slug: Steering Group minutes author: anonymous +categories: + +- steering group minutes --- diff --git a/docs/blog/posts/2025-01-16-steering-group-minutes.md b/docs/blog/posts/2025-01-16-steering-group-minutes.md new file mode 100644 index 00000000..50f780bd --- /dev/null +++ b/docs/blog/posts/2025-01-16-steering-group-minutes.md @@ -0,0 +1,98 @@ +--- + +date: 2025-01-16 +slug: "Steering Group minutes" +author: anonymous +categories: + +- steering group minutes + +--- + +Agenda: + +1. BIDS Meeting - Rennes `10 min` + + - Possible meeting dates: + - April 23-25 (these are the only dates that the Maintainers didn't want) + - May 26-28 + - June 10-13 + +1. Mathew Abrams - INCF Fiscal Sponsorship `30min` + + make a summary of INCF as official fiscal sponsor + subcontractor on grants -- to be discussed among maintainers and checked by Mathew then the community should vote on that proposal + +1. Maintainers Updates + + - Copenhagen BIDS Maintainers meeting: do we need a theme to justify this or can we have it as maintainers meeting only? + + - New BEP PRs: + + - [BEP044 Stimuli](https://github.com/bids-standard/bids-specification/pull/2022) + + - Maintainers to develop the BEP timeline with promotion/demotion and some criteria + + + +## Participants + +- Yaroslav O. Halchenko +- Dora Hermes +- Cyril Pernet +- Camille Maumet +- Anthony Galassi +- Kimberly Ray +- Guest: Mathew Abrams + +## Mathew Abrams - INCF Fiscal Sponsorship + +- benefits: improved access to funding, + +- community building services: web development, conference services, financial management, coordinate working groups, management of training groups + +- dedicated Q\&A forum for BIDS via Neurostars + +- resources for capacity building: can leverage their training space for education on BIDS + +- marketing packages via INCF community + +- Fees: 10% of annual budget, 15% of total budget funds received through grants + +- Discussed the links between the BIDS community and INCF + +- NIH applications (@Yaroslaw if you can fill in that would be great!) + +- No restrictions on how little the received money can be (for example awards). + +- NIH grant, sub-award for INCF? + +- Help (paid) organize events? + + - possibility to pay for flights or to reimburse individuals through expense claims, INCF takes the admin burden of the reimbursement. + - provide extra services to organize meetings... + +- "Sign off" on agreements on behalf of BIDS? should be possible, needs to be checked specifically (Yarik would share docs on SHARAZA-IHE) + +- INCF is already doing fiscal sponsorship with multiple projects including: Scicrunch w/ grant from CZI, community coordination for the Mathworks neuroscience community, Repronim, bridge. + +- Link: + +- Can pay money for developeers/contributors if they have their own company or if a company can play this role (typically takes around 25% in total). Within Europe can be done for the one used by INCF for consultants (down to 18%). + +- Researched into other similar companies and their models... Like some NYC company named after Belgian king ;) + +## BIDS meeting + +- Camille: reminded that we contemplated Copenhagen and INRIA for + +- We need to find out how much fund we have + +- Ariel is happy to have WashU handle reiembursements. + +- Current availability to host a BIDS meeting in Rennes in April/May/June: + + - April 23-25 + - May 26-28 + - June 10-13 + +- First 2 weeks of May were preferred by the maintainers. Unfortunately this is not working for the Inria venue. diff --git a/docs/blog/posts/2025-02-13-steering-group-minutes.md b/docs/blog/posts/2025-02-13-steering-group-minutes.md new file mode 100644 index 00000000..5e43a584 --- /dev/null +++ b/docs/blog/posts/2025-02-13-steering-group-minutes.md @@ -0,0 +1,125 @@ +--- + +date: 2025-02-13 +slug: "Steering Group minutes" +author: anonymous +categories: + +- steering group minutes + +--- + +## Agenda + +1. BIDS meeting `10min` + - [ ] Copenhagen (need to know by FEB 28) + - [x] Update on dates - Chris M out through may 2 + - [x] May 5th Monday to Wednesday 7th + - [ ] Add online meeting for BEPs + - [ ] Make it a BIDS brainhack thing + + - [x] Day 1 (Monday) - public day + + - [x] Day 2-3 (Tues-Weds) : Maintainers, get through as many issues as we can + + - [ ] Scope/Focus - justifying additional invitees -- + - [ ] Public day - outreach to European BIDS collaborator + - [ ] How many people? + - [ ] Stefan, Robert, Oscar, Martin N, M Hanke, Yarik? + + - [ ] which PRs could use invites? + - [ ] atlases + - [ ] eye-tracking + - [ ] PR "pay to play" + + - [ ] Logistics for late Feb: + - [x] Who's paying for flights? + - Can use the funds that Ariel (and Cyril if in EU) still has + + - [ ] Who's coordinating? + - Cyril helps with with local logistics + - Program and content details ??? + + - [x] Who's booking hotels? --> Cyril + +1. MEDD Reversion `5min` + - Chris M started a response: MEDD + - Used this as precedent to set guidelines to be added to BIDS website with respect to adding new format to BIDS + +1. BIDS BEP process + - Started a PR to update it [on the BIDS website](https://github.com/bids-standard/bids-website/pull/615) + - Will require creation of a working group as modification of the governance + - Yarik had an idea of "BEP AI Agent", generalized overall into a request [where to file such ideas for projects?](https://github.com/bids-standard/bids-website/issues/620) + +1. Maintainers Updates + > Cyril raised issue on field mandatoriness consistency in qMRI (field X must be present, but if one one does not know the value use filed Y, ok so why not allow field Y + + + +## Participants + +- Dora Hermes +- Kim Ray +- Franco Pestilli +- Cyril Pernet +- Rémi Gau (BIDS maintainer) +- Yaroslav Halchenko + +## Meeting Minutes + +### BIDS Copenhagen Meeting: May 5-7 + +- Cyril will book a meeting room May 5th for Maintainers meeting +- DH: when will we have a plan/schedule so that Steering Group and others can book their travel? +- RG: do we want to extend an invite to those with mature BEPS? +- RG: one priority for maintainers is to address the growing number of issues and PR requests. +- DH: will there be an online working day as well for people that are creating 'issues' for maintainers +- FP: we could label this as a 'brainhack' to build synergy and publicity for the meeting +- RG: who will pay for flights from USA +- CP: Ariel will pay for fligths from US, Cyril will pay for EU +- YH: Confirm with Ariel the reimbursement details or best to prebook through them + +### BIDS fiscal sponsorship with INCF + +- See last meeting notes + +- this should be voted on by the committee + YH: proposal would need more details + +- KR would contact Matthew to get contract, based on which and notes we would prepare the post/voting in support of using INCF as fiscal sponsor + +### MEDD Revision + +Cyril/Chris started a google doc for this: MEDD + +- This could be useful for the next version of BIDS specification as well. + +- RG & CP: It should be clearly stated and easily found. + Could be even part of the spec not just website. + +- Chris will send an email response + +- YH: adding new formats to BIDS should be considered IFF they are already being widely used (80/20 rule) + +- DH: we dont want to be a format approval for companies, there should be a need or use case from the community to support BIDS extending to the format + +- we should also provide feedback on the decision process and why a new format is not being adopted (its not a common format), + +- procedure: ask advisory groups to see if a new suggested format matches the criterion + +### Maintainers Updates + +- BEP process is growing, and will likely involve change to the governance. This will also need a working group + +- Started a PR to update it [on the BIDS website](https://github.com/bids-standard/bids-website/pull/615) + - Will require creation of a working group as modification of the governance + - we can and should operationalize the BEP process + - CP there seems to be an 'infinite loop' of propose BEP-review-etc-etc, how do we solve this? (eg, atlas BEP) + - DH & CP: Virtual/in-person discussions tend to facilitate resolving issues or barriers, this should be organized by BEP leads with all parties involved. A summary of the discussion outcomes should then be provided to the maintainers. + +## Tasks + +### Steering Group + +- [ ] Ask for INCF Fiscal Sponsorship Contract from Mathew Abrams \[Kim - sent] +- [ ] BIDS Connectivity needs coordination across BEPS. \[Franco] diff --git a/docs/blog/posts/2025-03-06-steering-group-minutes.md b/docs/blog/posts/2025-03-06-steering-group-minutes.md new file mode 100644 index 00000000..708ae81d --- /dev/null +++ b/docs/blog/posts/2025-03-06-steering-group-minutes.md @@ -0,0 +1,146 @@ +--- + +date: 2025-03-06 +slug: "Steering Group minutes" +author: anonymous +categories: + +- steering group minutes + +--- + + + +## Participants + +- Franco Pestilli +- Kim Ray +- Christine Rogers (maintainer) +- Eric Earl (maintainer) +- Camille Maumet + +## Agenda + +1. BIDS meeting `10min` + - Dates May 12-14 + + - Cyril handling travel, pending UW contracts + + - 4-5 nights hotel, [Scandic hotel likely](https://www.scandichotels.dk/hoteller/danmark/kobenhavn/scandic-sydhavnen?\&cmpid=ppc_BH2d\&s_kwcid=AL!7589!3!650888367006!e!!g!!scandic%20sydhavnen\&gad_source=1) + + - Day 1 "Euro-Community outreach day" format - how public? + - 6 invitees + + - Day 2-3 Maintainers focus + + - Additional Invitees for Day 1 only: from Europe + + - Cyril to start a spreadsheet for Maintainers to complete + + - to invite: Robert, Oscar, Martin N, Hanke (Yarik is reconfirming the availability), Cyril (Day 1+2), Lyuba Zehl? Dora Hermes? Guiomar Niso? + + - likely add-ons: + - Hugo Boniface + - Daniel Brady? (new python-validator contributor EEGManyLabs UK) + - Cyril's list of potential invitees: 2 bids2openmind (2 women perhaps), comp'l models (from Petra's group) + - invitees more balance: Guio Niso?, (Dora?), Julia-Katharina Pfarr (EU)? + - In-person format all days; Hybrid would need justification and support + - Possible invitee: Ghislain Vaillant (who is on the BEP below)? + +1. BIDS BEP Approval: Cardiac MRI + - needs approval from 3 SC members + - see [BEP046: Cardiac MRI BIDS](https://github.com/bids-standard/bids-specification/issues/2011) + - Process: Does Steering prefer a group meeting item vs. a Mattermost thumbs-up ask? + - Governance? + - stats model - like a bep but not in the spec. + - 2 Yes: Yarik, Franco + - 2 No: Cyril, Camille + - Moving beyond Brain could merit a bigger community discussion, + - main concern is how to validate if the community is not known to current core of BIDS + - Franco: listing more PI contributors would help + - Yarik : identify reviewers in the github issue + - Draw a stronger connection to Brain data + - Maintainers (Remi) are working on clarifying the BEP process (what happens when) + +1. Franco governance question: relatinoship between the maintainer and the BEP, conflict of interest + +1. 2024 Google Season of Docs + - Maintainers would like to complete the compensation for our 2024 Writer, Damion Demeter. + - 52% of $5k stipend lost to new Swedish taxation on INCF disbursement. + - The project was completed successfully, new BIDS website is live, Eric could speak to mechanism. + - Would BIDS consider contributing $2600 USD to fulfill the project compensation? + - - Steering votes Yes + - Yarik will use his funds. + +1. INCF Fiscal Sponsorship + - Concerns raised by maintainers: + + - I think INCF would be a good partner provided clarification on timelines and the taxation categories + - FWIW: Yarik is reporting that Mathew affirmed that they could take care about signing on contracts like the one for [IHE\_SHARAZONE](https://www.ihe-europe.net/IHE_SHARAZONE) + + - It's nice that INCF is trying, but it's just too much altogether to deal with. I would rather we try our hand at an existing non-profit or affiliation like Numfocus for all future endeavors. I'd also go ahead and throw out Catalyst Neuro as they've intimated at being able to disperse Neuro funding across borders and projects. + + - proposed alternative: + +## Meeting Minutes + +### BIDS Copenhagen Meeting: May ~~5-7~~ + +- dates have changed to May 12-14 +- Sunday travel, Monday small meeting and hack, tuesday/wednesday hacking. Thursday travel back +- venue: hotel - TBD (likely ) +- FP request - to finalize the BIDS connectivity +- Cyril Pernet - he needs to start with his funding needs , this will also hopefully engage more EU. +- "scope" maintainers and to promote more EU engagement +- request for more diversity in invitees (women) +- 2 people form BIDS2OpenMind +- computation models experts in EU +- Oscar, Lyuba Zehl, Guiomar Niso +- SteeringCommittee: YC, CP, + +### Cardiac BEP + +- YH: gives :+1: Justification: MRI, supplemental to brain, we have already non-brain modalities (events, physio, working on prov and so on) +- FP: gives :+1: +- CP: gives :-1: Justification: not about brain +- CM: gives :-1: Concern about not knowing how the BEP would be validated. +- Common concerns: unclear how many experts could support/review +- CP: voices concerns about this being beyond brain +- CM: views this as borderline, will it be supported by our community +- YH: if there is support behind it, which Christine has indicataed that there is +- YH: steering group might take responsibility to assist in identifying potential expert reviewers +- CP: may be it should be "outside" of BIDS as, for example we have `/stats-modes` and new BIDS apps 2.0. YH: I think it is more appropriate for BEP, being part of BIDS. +- FP: what does the Governance say? What do the governance docs say about conflicts/COIs between SC and Maintainer assigned to a BEP and the group developing the BEP. +- CR: given that steering committee is reluctant to approve, what are the next steps? +- CR: cardiac group is polling their own community to build the BEP to get as much support from cardiac group as possible. +- FP: this type of proposal that could be used as an edge case in future BEPs. +- CM: How do we move with this? +- CR: she will bring this back to the maintainers and comments on not knowing how to move forward with a missing BIDS committee meeting. +- EA: Remi is trying to formalize BEP process, so the requirement for 3 SC approvals to progress is a new. BIDS has done non-brain BEPS (like tabular phenotypic data, eye-tracking, physio) +- CP: these examples support brain imaging, the Cardio BEP does not yet support brain imaging +- YH: the BEP should not have to specify how its brain related. +- CM: a more clear reasoning/clarification on how the cardiac BEP relates to brain (besides "brain-heart interconnectome") +- FP: its possible that more evidence of community support from Cardiac could result with a more positive voting results. COI may also need to be addressed. + +### BIDS fiscal sponsorship with INCF + +- See last meeting notes + +- this should be voted on by the committee + - Christine and Eric mention google season of DOC issues where new tax laws required that the person received elss than half of what they were expectings. there was significant financial delays in dispercement (4 months). + - Will steering committee consider cover the remaining half of the compensation/stipend ($2600 USD). their work was developing the BIDS website which is now being used publicly + - CM: leans to say yes but we dont know what funds BIDS has + - YH: righT now we dont have much money but the idea is that we could get it (with INCF) + - FP: what % of the BIDS purse is $2600? + - We should also establish a governance procedure for this. + - YH: if they are in the US, we could pay them from his. + - FP: We need to establish a treasurer. + - Steering agrees to pay (from YH) + - CR: maintainers' main concern was payment amount, payment timing, not timely communication about payment & taxation issues where surprises came when individuals received less compensation than what was agreed upon. + +## Tasks + +### Steering Group + +- [ ] INCF Fiscal Sponsorship \[xx - ] +- [ ] Spreadsheet for BIDS meeting invites \[Cyril Pernet] diff --git a/docs/blog/posts/2025-03-27-steering-group-minutes.md b/docs/blog/posts/2025-03-27-steering-group-minutes.md new file mode 100644 index 00000000..44ececdf --- /dev/null +++ b/docs/blog/posts/2025-03-27-steering-group-minutes.md @@ -0,0 +1,127 @@ +--- + +date: 2025-03-27 +slug: "Steering Group minutes" +author: anonymous +categories: + +- steering group minutes + +--- + +## Agenda + +1. Copenhagen maintainer meeting + +1. Follow up on cardiac BEP + +1. BEP045 (Physio) + + > email from BEP045 (Physio), is input needed from steering? + +1. Maintainers Updates \[name= all maintainers] + + - MEDD draft written. Does steering have a group account? Or who is sending? + - New maintainer: Julia-Katharina Pfarr + - Conflict of interest on BEPs + - Status updates for BEPs being solicited + + + +## Participants + +- Yaroslav Halchenko +- Dora Hermes +- Camille Maumet +- Kim Ray +- Chris Markiewicz +- Franco Pestilli + +## Meeting Minutes + +### Copenhagen Meeting + +- Chris M - waiting on purchase order from Copenhagen (could be any time) but still no guarantee on whether the full procedure will be feasible in the timeframe. +- timing is getting quite tight +- Camille M - suggests planning a meeting for next year in France that pairs well with OHBM. This will help with future maintainers meetings. +- Current status, 'wait and see' for if/when contracts get approved and if its too late to still have the meeting. + +### Follow up on cardiac BEP + +- Camille M - where is this standing currently? + +- Chris M - discussed in maintainers meeting, medical imaging BEP was encouraged to do a more focus BEP + +- maintainers feel that the brain aspect of the BEP is within scope, but the cardiac specific piece might out of scope, this could be kept at arms length. + +- Dora: Are the BEP leads close to brain imaging or imaging adjacent? + +- Chris M: there are some neuroimaging researchers listed on the BEP contributors list, we are not familiar with the lead. + +- Camille M : is this stuck because of the previous vote? how can we get this un-stuck and respond to the BEP leads? + +- Chris M: we try to have a BIDS maintainer leads to advocate for the BEP, Christine took this role for the previous vote. Cardiac BEP contributors would like to have confidence that the BEP will likely be approved before putting all of the work in. + +- How can we get Steering group attention for these type of items that need voting: (so that steering is not being asked to vote on something they have 5 minutes notice to) + - mattermost tagging + - email (BIDS steering email ) + - request for 1-2 weeks notice depending on the time needed to give an informed vote + - this should be added into a governance document. + +- Chris M can work with Christine to put together an email for bids steering group. + +- Dora mentions wanting some philosophy support the need for the BEP, and why it should be part of BIDS. + +- Franco, this is key to the dicsusion where BIDS needs to determine to what degree they want to extend BIDS beyond the brain and if we have the bandwidth to do so. + +- Dora - physio has SPARC ( by BIDS) which is related but makes more sense for non-brain studies, so we should better understand the need for this BEP + +- Franco - do we have a network outside of BIDS? (eg SPARC/GA4GH) that we could contact when BEP requests come in that might not be best for BIDS but may fit better with other standards. + +- Yaroslav - we have a related issue for this + +- Camille - a resource for searching for standards + +- Chris - how do we join this community in a meaningful way? the Steering group may not have the expertise now, but could in the future so how do we work with this? + +- Yarik - Idea to have BIDS "modules" that can have a different process than BEPS. This could be applicable for 'other body' parts that are outside the expertise of the core BIDS community. Here we could instead as BIDS module leads to submit a list of people/groups they think would be relevant to review the proposed standard. + +### BEP045 (Physio) + +- bids steering received an email from them that needs a reply. +- YH: we should look at the BEP, see what they are doing, see if they need guidance +- Chris M: Rémi has been working on this BEP, but he not able to continue supporting the BEP. +- KR: suggests responding to Mary asking for a more formal email comparable to what we are asking for the Cardiac BEP that include more information so that Steering can vote on if it should move forward. +- YH: suggests clarifying that derivatives part of the BEP might need to be separate. +- YH: sends github response suggesting to split BEP, following Rémi's prior suggestion: + +### Maintainers Updates + +- MEDD format (.medd extension?) draft email written. + + - Who is sending? Should be steering, since it's a steering decision. Is there a common email, or will one person take the lead? + + - Camille to ask Dora if she can send the email, Franco to update the text, Chris to add guidelines to BIDS website + + - Guidelines + - Currently spread across [BEP guidelines](https://bids.neuroimaging.io/extensions/guidelines.html), aimed at BEP leads. Should we split into a generic "BIDS contribution guidelines" and a targeted BEP-specific guidelines? + +- Julia-Katharina Pfarr: Postdoc (?) w/ JB Poline. Worked on eyetracking BEP. + +- COI on BEPs + 1. Hard to avoid. Maintainers best suited to shepherd a BEP are those closest to the data types and thus community. + 1. We're working on a BEP status pipeline and dashboard for transparency. Hopefully this can address the general concern and identify specific concerns that can be discussed? + 1. If process needs to be discussed, a synchronous steering+maintainers meeting makes sense. Probably should block 1.5-2 hours to avoid rush. Copenhagen would be ideal, if it happens. + +- BEP health checks + - Contacting BEP leads for status and blockers in prep for town hall. + +## Tasks + +\==Importance== (1 - 5) / Name + +### Steering Group + +- [ ] \==1== Connect with SPARC to see how its related to BIDS \[ Dora ] +- [ ] \==1== Reply to physio BEP, suggesting to follow Rémi's guidance \[Yaroslav sends github response echoing Rémi] +- [ ] \==5== Steering Group please send out MEDD email from bids.steering email address \[Camille, but maybe Dora since she is more familiar with MEDD] diff --git a/docs/blog/posts/2025-04-17-steering-group-minutes.md b/docs/blog/posts/2025-04-17-steering-group-minutes.md new file mode 100644 index 00000000..dded6fcf --- /dev/null +++ b/docs/blog/posts/2025-04-17-steering-group-minutes.md @@ -0,0 +1,128 @@ +--- + +date: 2025-04-17 +slug: "Steering Group minutes" +author: anonymous +categories: + +- steering group minutes + +--- + +## Agenda + +1. Guest: Maryanne Martone (SPARC) + +1. Copenhagen maintainer meeting + +1. Follow up on cardiac BEP + +1. BEP045 (Physio) + > email from BEP045 (Physio), is input needed from steering? + +1. Maintainers Updates \[name= all maintainers] + + + +## Agenda + +- Yaroslav Halchenko +- Dora Hermes +- Kim Ray +- Eric Earl (Maintainer rep) +- Maryanne Martone (SPARC) +- Tom Gillespie (SPARC) + +## Meeting Minutes + +### SPARC + +- originally noted and some pointers in + +- History + - Originated in 2018 + + - Physiology, microscopy... + + - NWB was not mature then + + - Found BIDS useful and thorough but not enough for physio, micro... data + + - raw, derived, and primary data + + - on population, specimen, subject, sample: + + - Tom Gillespie instrumental in implementing version 2 of SPARC + + - Just released SDS 3.0 (`MIS` = minimal information standard) + + - includes an SDS viewer to allow seeing the over structure of a dataset (graph based) + + - allows for "flexible hierarchy"? + + - reorders the hierarchy categories to subject level + + - Sample, Subject, and manifests + + - Study > Subjects > Protocols > Subject Groups + + - SDS allows nesting of datasets to support interoperability, but they cannot have the same IDs/naming schema + + - conversion/renaming/moving process of data into SDS is often a source of error + - solution: validation during upload to SPARC database + + - allows to adding additional "standards" a particular dataset conforms to (for example RE-JOIN/HEAL) and providing additional jsonschemas for specific files. + - note (Yarik): somewhat relates to ("BIDS Extensions") + +- SPARC was always meant to be multi-modal + +- Tries to be "Flexible" to accommodate different requirements of multiple "actors" in a consortia + +- EX: SDS allowing embedding of BIDS: /.dss (ad-hoc prescription of a dataset standard) + +- Have an extensive list of "modalities/data types", which also have strong accent on genetic data and also "computational models" + + - then metadata records reflect "Ten simple rules" (TSR), googled into + +- Questions Yarik planned to ask but didn't + + - Any specific rules or "mapping" regex or alike for the file names? + + - Any software/libraries to deal with SDS formatted datasets? + + - If not NWB -- what file format for electrophys data? + + - Given current state of NWB, BIDS and various BEPS -- would you consider just going after BIDS? + + - What aspects of SPARC to bring in? + + - There is a validator (and also mentioned in ), but how "detailed" validator is, what aspects does it validate? + +- Yarik: I think we should aim to translate such presentations into specific *actionable* items on how to improve BIDS + +- for example here the idea from SDS to provide custom jsonschemas for extra validation of some .json files. that somewhat relates to an issue where I added a comment now: + +### Copenhagen Meeting + +maintainers need to get travel information to Cyril ASAP - goal is this week or next. + +### Follow up on cardiac BEP + +### BEP045 (Physio) + +### Maintainers Updates + +1. Getting BEP status updates in the next 2-4 weeks. +1. Would like to talk about the potential Virtual BIDS Town Hall this year. + +## Tasks + +\==Importance== (1 - 5) / Name + +### Steering Group + +- [ ] BIDS townhall + +### Maintainers + +- [ ] Send travel info to Cyril diff --git a/docs/blog/posts/2025-05-08-steering-group-minutes.md b/docs/blog/posts/2025-05-08-steering-group-minutes.md new file mode 100644 index 00000000..fdfb403d --- /dev/null +++ b/docs/blog/posts/2025-05-08-steering-group-minutes.md @@ -0,0 +1,134 @@ +--- + +date: 2025-05-08 +slug: "Steering Group minutes" +author: anonymous +categories: + +- steering group minutes + +--- + +## Agenda + +1. Melissa Kline Struhl - Psych-DS Guest + - + +1. Response to MEDD regarding new format `5 min` + +1. OHBM business`10 min` + +1. Maintainers updates `10 min` + - Maintainers need more members recruited + +1. (after end) Copenhagen Maintainers Meeting updates `15 min` + + + +## Participants + +- Yaroslav Halchenko +- Camille Maumet +- Dora Hermes +- Eric Earl +- Anthony Galassi +- Melissa Kline Struhl +- Brian Leonard + +## Meeting Minutes + +### Psych-DS + +Melissa Kline Struhl + +- comes from the SIPS community, they recognized there was a mismatch in skillset for researchers in psych to adhere to BIDS. + - Do everything in excel, most often small datasets + +- the replication crisis has motivated their community to build/adopt standards like BIDS + +- community is working towards making their research more FAIR + +- dataset\_description.json uses JSON-LD schema.org + +- data likely contains information form multiple subjects in a single file (ex: excel or csv with all subject data) + - this data is typically stored in the 'data' folder + - use csv file format for tabular data + +- for researchers who do not use machine-redable workflows to provide a road into that + +- Psych-DS is currently developing a validator schema.org/Dataset + +- Example usecases of interaction with BIDS + - extracting behavioral data to be analyzed separately + - or inject behavioral data into a BIDS dataset + +- they are a data format for the BRAIN Initiative BBQS (data coordinating for behavioral data) + +- Discussion: + + - DH: BIDS has events files, does psych-DS plan to include something similar for data like reaction times... + - MKS: It hasn't been built yet, but that is a very likely use case to work towards + - EA: what about data dictionary? it looks like anything is a data dictionary? + - MKS: in the current examples, users are given options of simple of variable names. But the documentation points users to be able to assemble more complex datasets () they do not require pulling variables from established onotologies but they do require variables to be defined + - DH: re data dictionary, are you considering heriarchical event descriptors? + - MKS: we are aware of the option, yes we would like of use hierarchical event descriptors is the data support it. + - Psych-DS is also working on conversation tools to convert data BIDs-->Psych-DS and Psych-DS-->BIDS + - EA: are you considering to include additional file formats beyond csv. csv only can become problematic if the data contains commas. + - NEXT STEPS: BEP 36 can reach out to Eric Earl for moving it forward. + +### Response to MED regarding new format + +- Dora felt that she has a COI, thus was not an appropriate person to respond on behalf of BIDS. +- Camille: it sounds like people are using MED, so perhaps we should revisit our response to include steps that would need to occur for MED to be involved with BIDS +- Dora: instead of saying 'no', we should provide a path forward for MED that the developers of the format should be responsible for. +- DH & CM would like to amend the email. we will continue the discussion on mattermost. + +### OHBM + +- townhall - is this day one or another time? + +- 2 BIDS-related events in OHBM + - BIDS opening - day one + - BIDS townhall - for BIDS to decide + +### Maintainers updates + +- Maintainers need more members recruited + + - Up one (Julia), but down 2 going on 3 or 4 (Rémi out for now, Stefan living life without BIDS, and possibly Anthony's and Eric's contracts up in September) + - A simple outreach method could be all runners-up for Steering Group elections + - \[name=Camille] I'd love an open call if we can and that makes sense. + - \[name=Kim Ray] I can reach out Ashley Stewart directly , can write a email for direct asks. + - \[name=Yaroslav] can we use the larger BIDS email list to cast a wider audience? + +- Expectations (onboarding docs: ) + - 1-2 hours a week + - attend 1 bi-weekly meeting + - technical skills not required + +- avenues for advertising: neruohackademy, brainhacks, BIDS adjacent groups (SPARC, NWB, Psych-DS, neuroblueprint ) + +### Copenhagen Maintainers Meeting updates + +(Asynchronously Eric talked with Cyril) + +- Q: Is the list of attendees/invitees complete? + - Cyril is going to put the attendees list on GitHub markdown + - 10 maintainers and steering + - No Peer, No Oscar + - Maybe 6 people from EBRAINS? Cyril's having trouble getting people to RSVP properly/fully + +- Q: What percent complete is booking travel and hotel? + - 10 people are booked for hotels + - Cyril to give hotel a list of names, and the hotel will give you your room when you show up giving them your name + +- Q: Are meals, incidental expenses, and ground transportation reimbursements possible (per diem...)? + - Cyril checking with Ariel, that question had not come up to Cyril before today + +- Ground transportation off flight + + - [Getting there](https://github.com/openneuropet/outreach/blob/main/BIDS_maintainers2025/location.md) + +- Tuesday, June 10 agenda item(s): EBRAINS needs to learn schema and see the BIDS ecosystem + - BIDS2OPENMIND collaborations + - Cyril writing down the agenda in GitHub or on the draft Google Doc agenda diff --git a/docs/blog/posts/2025-05-29-steering-group-minutes.md b/docs/blog/posts/2025-05-29-steering-group-minutes.md new file mode 100644 index 00000000..83e1e5a4 --- /dev/null +++ b/docs/blog/posts/2025-05-29-steering-group-minutes.md @@ -0,0 +1,41 @@ +--- + +date: 2025-05-29 +slug: "Steering Group minutes" +author: anonymous +categories: + +- steering group minutes + +--- + +## Agenda + +1. OHBM Townhall `20 min` + - review plan and any slides for the townhall + - SG please complete: slide 8 (heading: BIDS 2024-25 Other Milestones) + - comments on orgnization or content? slides to cut? + +1. Response to MED regarding new format `5 min` + +1. Maintainers updates `10 min` + - Maintainers need more members recruited + +1. (after end) Copenhagen Maintainers Meeting updates `15 min` + + + +## Meeting Minutes + +### OHBM + +### Response to MEDD regarding new format + +- DH & CM would like to amend the email. we will continue the discussion on mattermost. +- Chris M would like further advice on how to move forward with their PR (Chris merged, should it be unmerged?) Chris suggested to pull it out and establish a separate process to put it back in + +### Maintainers updates + +- Maintainers need more members recruited + +### Copenhagen Maintainers Meeting updates diff --git a/docs/blog/posts/2025-07-03-bids-town-hall.md b/docs/blog/posts/2025-07-03-bids-town-hall.md index dd7cd6f1..23522a3c 100644 --- a/docs/blog/posts/2025-07-03-bids-town-hall.md +++ b/docs/blog/posts/2025-07-03-bids-town-hall.md @@ -1,17 +1,20 @@ ---- -date: 2025-07-03 -slug: "BIDS Virtual Town Hall 2025" -author: anonymous -categories: -- town hall ---- - -Come share your views and learn more about how the BIDS project is developing - -The 2025 virtual BIDS Town Hall happening on Wednesday, July 16 at 11:00 AM EDT ([check your time here](https://www.worldtimebuddy.com/event?lid=8,6,5,12&h=8&sts=29210820&sln=8-9&a=preview&c=1381)). - -Hear more about our organizational updates, status updates from several of our BIDS extension proposals (BEPs), our community projects, and voice your thoughts about BIDS! - -The event will take place fully virtually on [the OSSIG Crowdcast platform](https://www.crowdcast.io/ossig2025) at [https://www.crowdcast.io/ossig2025](https://www.crowdcast.io/ossig2025) - -Please feel free to reach out to the BIDS Maintainers ([bids.maintenance@gmail.com](mailto:bids.maintenance@gmail.com)) with any questions. +--- + +date: 2025-07-03 +slug: "BIDS Virtual Town Hall 2025" +author: anonymous +categories: + +- town hall + +--- + +Come share your views and learn more about how the BIDS project is developing + +The 2025 virtual BIDS Town Hall happening on Wednesday, July 16 at 11:00 AM EDT ([check your time here](https://www.worldtimebuddy.com/event?lid=8,6,5,12\&h=8\&sts=29210820\&sln=8-9\&a=preview\&c=1381)). + +Hear more about our organizational updates, status updates from several of our BIDS extension proposals (BEPs), our community projects, and voice your thoughts about BIDS! + +The event will take place fully virtually on [the OSSIG Crowdcast platform](https://www.crowdcast.io/ossig2025) at + +Please feel free to reach out to the BIDS Maintainers () with any questions. diff --git a/docs/blog/posts/2025-07-31-steering-group-minutes.md b/docs/blog/posts/2025-07-31-steering-group-minutes.md new file mode 100644 index 00000000..686bb262 --- /dev/null +++ b/docs/blog/posts/2025-07-31-steering-group-minutes.md @@ -0,0 +1,87 @@ +--- + +date: 2025-07-31 +slug: "Steering Group minutes" +author: anonymous +categories: + +- steering group minutes + +--- + +## Agenda + +1. [move to bids-standard.org](https://github.com/bids-standard/bids-website/issues/673#issuecomment-2971005849) + +1. Response to BIDS Townhalls `5 min` + + > do we have an estimate date on the rolling of the new BIDS website? + > \[name=Camille] list of BEP statuses? + > \[name=Yarik] commented + +1. Revitalize BIDS discussions w/journals `10 min` + +1. Maintainers updates `10 min` + - Maintainers are back to regular meetings after on-boarding Ashley, Boris, and Yahya + + - Maintainers would like steering to weigh in on the modality and data types discussion + \- [Issue #2108](https://github.com/bids-standard/bids-specification/issues/2108) + \- [Oscar’s proposal](https://github.com/bids-standard/bids-website/pull/670/files) + \- [Yahya’s proposal](https://github.com/bids-standard/bids-specification/pull/2135) + + - EBRAINS Summit/INCF BIDS Help Desk funding for Christine? + \- Cyril and Franco will be there. + + - From the town hall: steering should continue Ariel's work to try getting "BIDS datasets" to pass the BIDS validator for published papers + +1. Steering meeting over zoom Camille won't be able to join as of Sept :( + + + +## Meeting Minutes + +### Move to bids-standard.org + +- YH: BIDS is now more than imaging, so the new web address aligns better with their presence. +- CM: BIDS neuroimaging has been out for a while, and so we need to be careful about implementing website re-directs, particularly since there are many resources that still use bids.neuroimaging.io +- FP & YH: BIDS has indeed expanded beyond neuroimaging, including behavioral experiments. +- SG: all in agreement to approve the move to bids-standard.org + +### BIDS Townhalls + +- Notes: +- CP: BIDS presence for EBRAINS & INCF in December - Cyril will be there. CP will submit a +- Cyril and Franco will both be at EBRAINS/INCF +- CM - we need more info on what the BIDS presence may look like at the EBRAINS/INCF meeting +- no BIDS table at INCF EBRAINS + +> From INCF newsletter: "We are happy to collaborate with EBRAINS to organize their Summit and our Assembly jointly on December 8-11 in Brussels, Belgium - stay tuned for exciting updates regarding the program and benefits for INCF members!" --> + +- CP there is more fundings for a BIDS maintainer meeting ($20Kish remaining) +- CP: need to follow up on BEP on atlases + +### BIDS Discussions with Journals + +- GOAL: tag when journals have BIDS compliant datasets that are sharable. +- YH: is there a github issue for this? +- CP: Aperture Neuro was open to incorporating BIDS (has been incorporated: see ), Scientific Data suggested creating a collection/BIDS-tag, Imaging Neuroscience was not enthusiastic,HBM - not much enthusiasm +- we could follow up with Renzo (Scientific data), then Simon Eickhoff (HBM) +- what is the ask for these journals: create a BIDS-compliant keyword? a citation (ex: datacite, ) cite the BIDS release used on zenodo, provide the BIDS validation files/certificate +- FP: ezBIDS could offer this service once it no longer requires data to be run through US servers +- Yaroslav: filed to make bids-validator provide instructions/citation + +### Logistics organization of Steering Group Meetings + +- on zoom +- best way to send apologies? +- Camille to try this up and get back to the steering group + +### Maintainers Updates + +- there are 3 new maintainers, the maintainers calls have been split into two calls now that work for US East/West coast and their closest non-US regions. +- Modality and datatypes discussion: Steering group please review and discuss feedback for merging. + +### BIDS in-person meeting before/after OHBM 2025 + +- We can add this point to the next steering meeting +- In the meantime, a quick show of hands of who on steering would be willing to attend such a meeting before and/or after OHBM would be useful. Also if we can hear from the maintainers that would be great as well. diff --git a/docs/blog/posts/announcement-community-forum-events.md b/docs/blog/posts/announcement-community-forum-events.md index a8a54fa6..69c39034 100644 --- a/docs/blog/posts/announcement-community-forum-events.md +++ b/docs/blog/posts/announcement-community-forum-events.md @@ -2,6 +2,9 @@ date: 2020-01-02 slug: Announcing Community Forum Events author: Kirstie Whitaker +categories: + +- announcement --- ## Join the first BIDS Community Forum events in January 2020 diff --git a/docs/blog/posts/community-survey-2024-closing.md b/docs/blog/posts/community-survey-2024-closing.md index d93f6728..d629c3d5 100644 --- a/docs/blog/posts/community-survey-2024-closing.md +++ b/docs/blog/posts/community-survey-2024-closing.md @@ -2,6 +2,9 @@ date: 2024-03-29 slug: "BIDS Community Survey 2024 closes April 3!" author: BIDS Maintainers +categories: + +- announcement --- The 💻 2024 BIDS Community Survey 💻 is closing **April 3**. If you haven’t already responded ✅, please do so at [bit.ly/bidssurvey2024](https://bit.ly/bidssurvey2024). Your opinions are valuable and every response will be read. And for those without Google, we will send a survey just for you soon! diff --git a/docs/blog/posts/community-survey-2024.md b/docs/blog/posts/community-survey-2024.md index e11b1a9f..d5a0c07d 100644 --- a/docs/blog/posts/community-survey-2024.md +++ b/docs/blog/posts/community-survey-2024.md @@ -2,6 +2,9 @@ date: 2024-03-01 slug: "BIDS Community Survey 2024" author: BIDS Maintainers +categories: + +- announcement --- The BIDS [Maintainers](../../collaboration/governance.md#bids-maintainers-group) diff --git a/docs/blog/posts/derivatives-final-request-for-comments.md b/docs/blog/posts/derivatives-final-request-for-comments.md index 9a4bbd32..8fb95966 100644 --- a/docs/blog/posts/derivatives-final-request-for-comments.md +++ b/docs/blog/posts/derivatives-final-request-for-comments.md @@ -2,6 +2,9 @@ date: 2020-05-25 slug: BIDS Derivatives final request for comments author: Franklin Feingold +categories: + +- announcement --- The BIDS community is preparing to merge the Common Derivatives extension. diff --git a/docs/blog/posts/engage-with-the-bids-ecosystem.md b/docs/blog/posts/engage-with-the-bids-ecosystem.md index 29371d99..69c676aa 100644 --- a/docs/blog/posts/engage-with-the-bids-ecosystem.md +++ b/docs/blog/posts/engage-with-the-bids-ecosystem.md @@ -2,6 +2,9 @@ date: 2020-03-20 slug: "Engage with the BIDS ecosystem" author: Franklin Feingold +categories: + +- announcement --- Tell us the best way for you to participate within our global community. diff --git a/docs/blog/posts/farewell-franklin.md b/docs/blog/posts/farewell-franklin.md index f2dd5a21..f2cb4cbc 100644 --- a/docs/blog/posts/farewell-franklin.md +++ b/docs/blog/posts/farewell-franklin.md @@ -2,6 +2,9 @@ date: 2022-07-28 slug: Farewell to Franklin author: Stefan Appelhoff +categories: + +- announcement --- Franklin leaves the BIDS maintainers team to move on to new adventures. diff --git a/docs/blog/posts/join-the-bids-community-on-the-brainhack-mattermost.md b/docs/blog/posts/join-the-bids-community-on-the-brainhack-mattermost.md index 71cdd3b6..20b30d20 100644 --- a/docs/blog/posts/join-the-bids-community-on-the-brainhack-mattermost.md +++ b/docs/blog/posts/join-the-bids-community-on-the-brainhack-mattermost.md @@ -2,6 +2,9 @@ date: 2020-06-24 slug: Join the BIDS community on the BrainHack Mattermost author: Franklin Feingold +categories: + +- announcement --- BIDS is joining the [BrainHack Mattermost][brainhack_mattermost]! diff --git a/docs/blog/posts/meet-the-bids-steering-group.md b/docs/blog/posts/meet-the-bids-steering-group.md index aaef46b5..e0b672f4 100644 --- a/docs/blog/posts/meet-the-bids-steering-group.md +++ b/docs/blog/posts/meet-the-bids-steering-group.md @@ -2,6 +2,9 @@ date: 2019-12-31 slug: "Meet the BIDS Steering Group" author: Kirstie Whitaker +categories: + +- announcement --- In October 2019, the BIDS community [voted](https://github.com/bids-standard/bids-specification/issues/355) to ratify a new governance structure and to [elect five members](https://drive.google.com/file/d/1mv_fOjeQbpAu6fVPKnTerXp-it6F59wi/view) to oversee the development and adoption of the standard. diff --git a/docs/blog/posts/new-website.md b/docs/blog/posts/new-website.md index c5590daf..70a9ee40 100644 --- a/docs/blog/posts/new-website.md +++ b/docs/blog/posts/new-website.md @@ -2,6 +2,9 @@ date: 2019-12-19 slug: New website author: Robert Oostenveld +categories: + +- announcement --- The BIDS website has been renewed and split over multiple pages. This makes it easier to manage the content, structure and the format. Please stay tuned for new updates to the website. diff --git a/docs/blog/posts/town-hall-2020.md b/docs/blog/posts/town-hall-2020.md index 8559c85b..f0e90e20 100644 --- a/docs/blog/posts/town-hall-2020.md +++ b/docs/blog/posts/town-hall-2020.md @@ -2,6 +2,9 @@ date: 2020-06-19 slug: BIDS at OHBM 2020 author: Franklin Feingold +categories: + +- townhall --- Check out the wide range of ways BIDS is being implemented throughout the field! diff --git a/docs/blog/posts/town-hall-2021.md b/docs/blog/posts/town-hall-2021.md index 16bc620f..c2362074 100644 --- a/docs/blog/posts/town-hall-2021.md +++ b/docs/blog/posts/town-hall-2021.md @@ -2,6 +2,9 @@ date: 2021-06-15 slug: BIDS Town Hall 2021 (with slidedeck update) author: Franklin Feingold +categories: + +- townhall --- Are you interested in learning more about how the BIDS initiative is developing? diff --git a/package.json b/package.json index 07ce0fab..aba7b26d 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,7 @@ { "scripts": { "remark": "remark ./docs ./templates --frail --rc-path ./.remarkrc", + "format": "remark --frail --rc-path ./.remarkrc", "all-contributors": "all-contributors generate" }, "dependencies": { diff --git a/pyproject.toml b/pyproject.toml index d4767457..1dbf978c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -34,7 +34,7 @@ members = ["tools"] [tool.codespell] builtin = "clear,rare,en-GB_to_en-US" -ignore-words-list = "Acknowledgements,als,ans,asai,nd,manuel,te,acknowledgements,Varian" +ignore-words-list = "Acknowledgements,als,ans,asai,nd,manuel,te,acknowledgements,Varian,mis" skip = ".git,env,specification,starter_kit,examples,apps,execution,pyproject.toml,data/**.tsv,data/**.json,docs/collaboration/contributors.md,package-lock.json" [tool.black]