feat: update relink container to Scout 2.1.0 #73
quantms-containers.yml
on: pull_request
Detect changes
4s
Matrix: build-diann
Matrix: build-relink
Sync OpenMS Containers
0s
Annotations
1 error, 9 warnings, and 7 notices
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Relink relink-1.1.0
buildx failed with: ERROR: failed to build: failed to solve: process "/bin/sh -c java -jar /opt/xisearch/xiSEARCH.jar --help 1>/dev/null && echo \"xiSEARCH installed\" && ls -lh /opt/xisearch/*.jar && \tset -e; test -s /opt/scout/Scout_Unix.dll; test -x /opt/scout/run_scout.sh; dotnet --info >/dev/null; test -e /usr/lib/x86_64-linux-gnu/libgmp.so.10; test -e /usr/lib/x86_64-linux-gnu/libmpfr.so.6; out=\"$(timeout 5s /opt/scout/run_scout.sh --help 2>&1 || true)\"; echo \"$out\" | head -n 20; echo \"$out\" | grep -qvE \"It was not possible to find any compatible framework version|Could not execute because the specified command or file was not found|A fatal error was encountered\" && \techo \"Scout installed\" && \tls -lh /opt/scout/Scout_Unix.dll /opt/scout/run_scout.sh && command -v xi-mzidentml-converter >/dev/null && python -c \"import pyopenms; print(f'pyopenms {pyopenms.__version__}')\" && python -c \"import polars; print(f'polars {polars.__version__}')\"" did not complete successfully: exit code: 127
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Detect changes
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, dorny/paths-filter@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Build and Push DiaNN diann-2.5.0 Docker Images
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, docker/build-push-action@v5, docker/login-action@v3, docker/setup-buildx-action@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Build and Push DiaNN diann-2.3.2 Docker Images
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, docker/build-push-action@v5, docker/login-action@v3, docker/setup-buildx-action@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Build and Push DiaNN diann-2.2.0 Docker Images
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, docker/build-push-action@v5, docker/login-action@v3, docker/setup-buildx-action@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Build and Push DiaNN diann-2.1.0 Docker Images
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, docker/build-push-action@v5, docker/login-action@v3, docker/setup-buildx-action@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Build and Push DiaNN diann-2.0.2 Docker Images
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, docker/build-push-action@v5, docker/login-action@v3, docker/setup-buildx-action@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Build and Push DiaNN diann-1.9.2 Docker Images
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, docker/build-push-action@v5, docker/login-action@v3, docker/setup-buildx-action@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Build and Push DiaNN diann-1.8.1 Docker Images
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, docker/build-push-action@v5, docker/login-action@v3, docker/setup-buildx-action@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Relink relink-1.1.0
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, docker/build-push-action@v5, docker/login-action@v3, docker/setup-buildx-action@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Build and Push DiaNN diann-2.5.0 Docker Images
Successfully built and pushed DiaNN diann-2.5.0 Docker and Singularity images to ghcr.io/bigbio
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Build and Push DiaNN diann-2.3.2 Docker Images
Successfully built and pushed DiaNN diann-2.3.2 Docker and Singularity images to ghcr.io/bigbio
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Build and Push DiaNN diann-2.2.0 Docker Images
Successfully built and pushed DiaNN diann-2.2.0 Docker and Singularity images to ghcr.io/bigbio
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Build and Push DiaNN diann-2.1.0 Docker Images
Successfully built and pushed DiaNN diann-2.1.0 Docker and Singularity images to ghcr.io/bigbio
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Build and Push DiaNN diann-2.0.2 Docker Images
Successfully built and pushed DiaNN diann-2.0.2 Docker and Singularity images to ghcr.io/bigbio
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Build and Push DiaNN diann-1.9.2 Docker Images
Successfully built and pushed DiaNN diann-1.9.2 Docker and Singularity images to ghcr.io/bigbio
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Build and Push DiaNN diann-1.8.1 Docker Images
Successfully built and pushed DiaNN diann-1.8.1 Docker and Singularity images to ghcr.io/bigbio
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