feat(diann): add --strip_unknown_mods to recover hydroxyproline / non-standard PTMs #388
ypriverolAnnotations
3 errors and 4 warnings
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nf-core CI
Canceling since a higher priority waiting request for nf-core CI-108 exists
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CI [test_dia_dotd] NXF=25.10.4
Canceling since a higher priority waiting request for nf-core CI-108 exists
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CI [test_dia_dotd] NXF=25.10.4
The operation was canceled.
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CI [test_dia] NXF=25.10.4
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, actions/setup-java@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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CI [test_dda] NXF=25.10.4
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, actions/setup-java@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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CI [test_dia_dotd] NXF=25.10.4
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, actions/setup-java@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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CI [test_dia_dotd] NXF=25.10.4
No files were found with the provided path: failed_logs. No artifacts will be uploaded.
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Artifacts
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nextflow_test_dda_25.10.4_27259130562_1_1781077851.log
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7.99 KB |
sha256:f452bfae6b00d95afe16c66dbbd055ef66e1f8f9583d8ddeaacae55938da086f
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nextflow_test_dia_25.10.4_27259130562_1_1781076942.log
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9.14 KB |
sha256:95337b8e96cfa26a80e0d6ad772e7dc8a39cb13a166c10217b9975be05c761f5
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nextflow_test_dia_dotd_25.10.4_27259130562_1_.log
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7.41 KB |
sha256:491cbcd5abb97b6aae3963965753dae423487b90b032f864620997fc1320e949
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test_dda_25.10.4_27259130562_1_1781077851_results
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29.3 MB |
sha256:b61d5d901e1c319642520afd8a8d6c20c856a56d69950a2501ce71e6e1d78b3d
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test_dia_25.10.4_27259130562_1_1781076942_results
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11.2 MB |
sha256:4710fce93e48b2149ce22e3bd7bee81aa509e51c43ccac5da1568a2fe5365e6b
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