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feat(diann): protein inference defaults to DIA-NN standard; relaxed/no-prot-inf opt-in #397

feat(diann): protein inference defaults to DIA-NN standard; relaxed/no-prot-inf opt-in

feat(diann): protein inference defaults to DIA-NN standard; relaxed/no-prot-inf opt-in #397

Triggered via pull request June 10, 2026 08:45
Status Cancelled
Total duration 7m 20s
Artifacts 1

extended_ci.yml

on: pull_request
Matrix: test-default
Matrix: test-latest
Matrix: test-singularity
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8 errors and 8 warnings
Default [test_dia_dotd] DIA-NN=1.8.1 NXF=25.10.4
Canceling since a higher priority waiting request for nf-core extended CI-107 exists
Default [test_dia_dotd] DIA-NN=1.8.1 NXF=latest-everything
Canceling since a higher priority waiting request for nf-core extended CI-107 exists
Default [test_dia_dotd] DIA-NN=1.8.1 NXF=latest-everything
The operation was canceled.
Default [test_dia] DIA-NN=1.8.1 NXF=25.10.4
Canceling since a higher priority waiting request for nf-core extended CI-107 exists
Default [test_dia] DIA-NN=1.8.1 NXF=25.10.4
The operation was canceled.
Default [test_dia] DIA-NN=1.8.1 NXF=latest-everything
Canceling since a higher priority waiting request for nf-core extended CI-107 exists
Default [test_dia] DIA-NN=1.8.1 NXF=latest-everything
The operation was canceled.
nf-core extended CI
Canceling since a higher priority waiting request for nf-core extended CI-107 exists
Default [test_dia_dotd] DIA-NN=1.8.1 NXF=latest-everything
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, actions/setup-java@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Default [test_dia_dotd] DIA-NN=1.8.1 NXF=latest-everything
No files were found with the provided path: .nextflow.log. No artifacts will be uploaded.
Default [test_dia_dotd] DIA-NN=1.8.1 NXF=latest-everything
No files were found with the provided path: failed_logs. No artifacts will be uploaded.
Default [test_dia] DIA-NN=1.8.1 NXF=25.10.4
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, actions/setup-java@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Default [test_dia] DIA-NN=1.8.1 NXF=25.10.4
No files were found with the provided path: .nextflow.log. No artifacts will be uploaded.
Default [test_dia] DIA-NN=1.8.1 NXF=25.10.4
No files were found with the provided path: failed_logs. No artifacts will be uploaded.
Default [test_dia] DIA-NN=1.8.1 NXF=latest-everything
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, actions/setup-java@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Default [test_dia] DIA-NN=1.8.1 NXF=latest-everything
No files were found with the provided path: failed_logs. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size Digest
nextflow_test_dia_latest-everything_1781081590.log
6.55 KB
sha256:e9318ec51513cc6c2702b2b337497a69ccd6b75e50a972341932bddc8eb68d2d