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Merge pull request #21 from bigbio/feature/dat-bypass-workflow #41

Merge pull request #21 from bigbio/feature/dat-bypass-workflow

Merge pull request #21 from bigbio/feature/dat-bypass-workflow #41

Triggered via push April 13, 2026 21:25
Status Failure
Total duration 4m 26s
Artifacts 1

ci.yml

on: push
Nextflow syntax validation
31s
Nextflow syntax validation
Validate test data format
9s
Validate test data format
Matrix: Run pipeline with test data
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1 error and 4 warnings
Run pipeline with test data (25.04.0)
Process completed with exit code 1.
Validate test data format
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4, actions/setup-python@v5. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Nextflow syntax validation
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/checkout@v4, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, actions/setup-java@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Run pipeline with test data (25.04.0)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/checkout@v4, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, actions/setup-java@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Run pipeline with test data (25.04.0)
No files were found with the provided path: failed_logs. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size Digest
nextflow_log_25.04.0_24367702883
4.57 KB
sha256:433309a32cd5db01a34812ed081bdb26cf0a4608fb3f7a5ef14f425c684e2a6e