Add staphscope recipe v1.1.0 (#63781)

* Add staphscope recipe v1.1.0

* Fix linting errors: use matplotlib-base and add run_exports

* Add skip_imports: perl to fix Perl import test

* Add skip_imports: perl to fix Perl import test

* Update meta.yaml

---------

Co-authored-by: Joshua Zhuang <71105179+mencian@users.noreply.github.com>

Author: bbeckley-hub

recipes/staphscope/meta.yaml

@@ -0,0 +1,73 @@
+{% set name = "staphscope" %}
+{% set version = "1.1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/bbeckley-hub/staphscope-typing-tool/archive/v{{ version }}.tar.gz
+  sha256: 0ea49f2678bbb93d3c30a7188dc5543e939997369492d548862e75d4c046a7a4
+
+build:
+  noarch: python
+  number: 0
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  entry_points:
+    - staphscope = staphscope.staphscope:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+    - setuptools
+  run:
+    - python >=3.8
+    - pandas >=1.5.0
+    - biopython >=1.80
+    - psutil >=5.9.0
+    - requests >=2.28.0
+    - tqdm >=4.64.0
+    - click >=8.0.0
+    - beautifulsoup4 >=4.11.0
+    - lxml >=4.9.0
+    - matplotlib-base >=3.5.0
+    - seaborn-base >=0.12.0
+    - scipy >=1.10.1
+    - plotly >=5.10.0
+    - abricate >=1.0.1
+    - perl
+    - any2fasta
+    - blast >=2.13.0
+    - perl-moo
+    - perl-list-moreutils
+    - perl-json
+    - perl-lwp-protocol-https
+    - perl-path-tiny
+    - perl-data-dumper
+    - perl-getopt-long
+    - perl-file-which
+
+test:
+  commands:
+    - staphscope --help
+  skip_imports: perl
+
+about:
+  home: https://github.com/bbeckley-hub/staphscope-typing-tool
+  license: MIT
+  license_file: LICENSE
+  summary: 'Advanced Staphylococcus aureus Typing & Lineage Analysis Platform'
+  description: |
+    StaphScope is a comprehensive bioinformatics tool for Staphylococcus aureus
+    genomic analysis including MLST typing, spa typing, SCCmec analysis,
+    antimicrobial resistance detection, virulence factors, plasmid profiling,
+    and lineage prediction from whole genome sequencing data.
+  doc_url: https://github.com/bbeckley-hub/staphscope-typing-tool
+  dev_url: https://github.com/bbeckley-hub/staphscope-typing-tool
+
+extra:
+  recipe-maintainers:
+    - bbeckley-hub