Installation incompatibilities

[ramongallego]

Hello,

I am trying to install deblur in a server running Ubuntu server 5.15.0-131. After running
conda create -n deblurenv python=3.8 numpy

and activating the venv
conda activate deblurenv
I tried the installation command
conda install -c bioconda -c biocore VSEARCH>=2.7.0 MAFFT>=7.394 SortMeRNA=2.0 biom-format deblur
Then I have like 1000 copies of the same warning message

warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY

Followed by these error messages

Any pointers?

[ramongallego]

I think one problem is with the syntax

VSEARCH>=2.7.0 MAFFT>=7.394

which creates two files named

'=2.7.0' '=7.394'

[amnona]

Hi, You should quote each package name. i.e. conda install -c bioconda -c biocore "VSEARCH>=2.7.0" "MAFFT>=7.394" SortMeRNA=2.0 biom-format deblur Let me know if this helped and/or if you have any additional questions Amnon

…

On Thu, Mar 6, 2025 at 1:30 PM ramongallego ***@***.***> wrote: I think one problem is with the syntax VSEARCH>=2.7.0 MAFFT>=7.394 which creates two files named '=2.7.0' '=7.394' — Reply to this email directly, view it on GitHub <#220 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABMQB4QEHQTX227AQJJJWT32TAWVPAVCNFSM6AAAAABYMGTF7WVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDOMBTGU4DCMRUGI> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***> [image: ramongallego]*ramongallego* left a comment (biocore/deblur#220) <#220 (comment)> I think one problem is with the syntax VSEARCH>=2.7.0 MAFFT>=7.394 which creates two files named '=2.7.0' '=7.394' — Reply to this email directly, view it on GitHub <#220 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABMQB4QEHQTX227AQJJJWT32TAWVPAVCNFSM6AAAAABYMGTF7WVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDOMBTGU4DCMRUGI> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>