From 260098bada97ac467dfb65f66c25fe1cdf15d0e7 Mon Sep 17 00:00:00 2001
From: amnona <amnonim@gmail.com>
Date: Sat, 8 Mar 2025 18:57:50 +0200
Subject: [PATCH] Update README.md

Update to match latest conda syntax
---
 README.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index c872cda..f51ee99 100644
--- a/README.md
+++ b/README.md
@@ -15,14 +15,14 @@ conda create -n deblurenv python=3.8 numpy
 
 and activate it using:
 ```
-source activate deblurenv
+conda activate deblurenv
 ```
 
 (note you will need to activate this environment every time you want to use Deblur)
 
 Install Deblur dependencies and Deblur itself:
 ```
-conda install -c bioconda -c biocore VSEARCH>=2.7.0 MAFFT>=7.394 SortMeRNA=2.0 biom-format deblur
+conda install -c bioconda -c biocore "VSEARCH>=2.7.0" "MAFFT>=7.394" SortMeRNA=2.0 biom-format deblur
 ```
 
 N.B. Some dependencies are version restricted at the moment but for different reasons. SortMeRNA 2.1 has a different output format which Deblur is not compatible with yet. A review of the changelog did not reveal any remarkable notes (e.g., bugs) about the reasons for the differences. In testing, the differences affected <0.1% of the sOTUs. As a precaution, we are advising the use of these specific versions for consistency with the manuscript.