Merge pull request #578 from biocore/csymons_fix_cloned_barcode

Fix Cloned Barcode

Author: cassidysymons

microsetta_private_api/db/patches/0140.sql

@@ -0,0 +1,68 @@
+-- In 0139.sql, we cloned two samples into new barcodes. Unfortunately, one of the source barcodes provided was incorrect.
+-- This patch completely backs out the erroneous clone, then clones the correct sample.
+
+-- First, we completely erase what we created for 0364406520
+DELETE FROM ag.vioscreen_registry vr
+    USING ag.ag_kit_barcodes akb
+    WHERE vr.sample_id = akb.ag_kit_barcode_id
+        AND akb.barcode = '0364406520';
+
+DELETE FROM barcodes.barcode_scans
+    WHERE barcode = '0364406520';
+
+DELETE FROM ag.source_barcodes_surveys
+    WHERE barcode = '0364406520';
+
+DELETE FROM ag.ag_kit_barcodes
+    WHERE barcode = '0364406520';
+
+DELETE FROM barcodes.project_barcode
+    WHERE barcode = '0364406520';
+
+DELETE FROM barcodes.barcode
+    WHERE barcode = '0364406520';
+-- End erasing 0364406520
+
+-- Now, we clone 000031037 into 0364406520
+INSERT INTO barcodes.barcode (barcode, assigned_on, status, sample_postmark_date, biomass_remaining, sequencing_status, obsolete, create_date_time, kit_id)
+    SELECT '0364406520', assigned_on, status, sample_postmark_date, biomass_remaining, sequencing_status, obsolete, create_date_time, kit_id
+    FROM barcodes.barcode
+    WHERE barcode = '000031037';
+
+INSERT INTO barcodes.project_barcode (project_id, barcode)
+    SELECT project_id, '0364406520'
+    FROM barcodes.project_barcode
+    WHERE barcode = '000031037';
+
+-- I'm omitting the sample_barcode_file and sample_barcode_file_md5 as they're
+-- no longer used and it would be inappropriate to directly clone a different
+-- barcode's associated file.
+INSERT INTO ag.ag_kit_barcodes (ag_kit_id, barcode, site_sampled, sample_date, sample_time, notes, moldy, overloaded, other, other_text, date_of_last_email, results_ready, withdrawn, refunded, deposited, source_id, latest_sample_information_update)
+    SELECT ag_kit_id, '0364406520', site_sampled, sample_date, sample_time, notes, moldy, overloaded, other, other_text, date_of_last_email, results_ready, withdrawn, refunded, deposited, source_id, latest_sample_information_update
+    FROM ag.ag_kit_barcodes
+    WHERE barcode = '000031037';
+
+INSERT INTO ag.source_barcodes_surveys (barcode, survey_id)
+    SELECT '0364406520', survey_id
+    FROM ag.source_barcodes_surveys
+    WHERE barcode = '000031037';
+
+INSERT INTO barcodes.barcode_scans (barcode, scan_timestamp, sample_status, technician_notes)
+    SELECT '0364406520', scan_timestamp, sample_status, technician_notes
+    FROM barcodes.barcode_scans
+    WHERE barcode = '000031037';
+
+INSERT INTO ag.vioscreen_registry (account_id, source_id, sample_id, vio_id, deleted, registration_code)
+    WITH temp_1 AS (
+        SELECT vr.account_id, vr.source_id, vr.vio_id, vr.deleted, vr.registration_code
+        FROM ag.vioscreen_registry vr
+        INNER JOIN ag.ag_kit_barcodes akb ON vr.sample_id = akb.ag_kit_barcode_id
+        WHERE akb.barcode = '000031037'
+    ),
+    temp_2 AS (
+        SELECT ag_kit_barcode_id
+        FROM ag.ag_kit_barcodes
+        WHERE barcode = '0364406520'
+    )
+    SELECT temp_1.account_id, temp_1.source_id, temp_2.ag_kit_barcode_id, temp_1.vio_id, temp_1.deleted, temp_1.registration_code FROM temp_1, temp_2;
+-- End cloning 000031037 into 0364406520