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Merge pull request #575 from biocore/csymons_copy_barcodes
Copy Barcodes
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  • microsetta_private_api/db/patches

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‎microsetta_private_api/db/patches/0139.sql

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-- This database patch copies two samples into new barcodes to reflect
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-- adjustments that were necessary in the wet lab. We don't believe this
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-- will be an ongoing need, but if it proves to be, check for new
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-- barcode-related tables before using this as a template.
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-- Begin copying X00236845 to 0364352596
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INSERT INTO barcodes.barcode (barcode, assigned_on, status, sample_postmark_date, biomass_remaining, sequencing_status, obsolete, create_date_time, kit_id)
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SELECT '0364352596', assigned_on, status, sample_postmark_date, biomass_remaining, sequencing_status, obsolete, create_date_time, kit_id
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FROM barcodes.barcode
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WHERE barcode = 'X00236845';
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INSERT INTO barcodes.project_barcode (project_id, barcode)
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SELECT project_id, '0364352596'
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FROM barcodes.project_barcode
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WHERE barcode = 'X00236845';
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-- I'm omitting the sample_barcode_file and sample_barcode_file_md5 as they're
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-- no longer used and it would be inappropriate to directly clone a different
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-- barcode's associated file.
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INSERT INTO ag.ag_kit_barcodes (ag_kit_id, barcode, site_sampled, sample_date, sample_time, notes, moldy, overloaded, other, other_text, date_of_last_email, results_ready, withdrawn, refunded, deposited, source_id, latest_sample_information_update)
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SELECT ag_kit_id, '0364352596', site_sampled, sample_date, sample_time, notes, moldy, overloaded, other, other_text, date_of_last_email, results_ready, withdrawn, refunded, deposited, source_id, latest_sample_information_update
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FROM ag.ag_kit_barcodes
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WHERE barcode = 'X00236845';
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INSERT INTO ag.source_barcodes_surveys (barcode, survey_id)
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SELECT '0364352596', survey_id
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FROM ag.source_barcodes_surveys
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WHERE barcode = 'X00236845';
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INSERT INTO barcodes.barcode_scans (barcode, scan_timestamp, sample_status, technician_notes)
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SELECT '0364352596', scan_timestamp, sample_status, technician_notes
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FROM barcodes.barcode_scans
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WHERE barcode = 'X00236845';
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INSERT INTO ag.vioscreen_registry (account_id, source_id, sample_id, vio_id, deleted, registration_code)
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WITH temp_1 AS (
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SELECT vr.account_id, vr.source_id, vr.vio_id, vr.deleted, vr.registration_code
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FROM ag.vioscreen_registry vr
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INNER JOIN ag.ag_kit_barcodes akb ON vr.sample_id = akb.ag_kit_barcode_id
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WHERE akb.barcode = 'X00236845'
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),
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temp_2 AS (
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SELECT ag_kit_barcode_id
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FROM ag.ag_kit_barcodes
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WHERE barcode = '0364352596'
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)
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SELECT temp_1.account_id, temp_1.source_id, temp_2.ag_kit_barcode_id, temp_1.vio_id, temp_1.deleted, temp_1.registration_code FROM temp_1, temp_2;
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-- End copying X00236845 to 0364352596
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-- Begin copying 000031307 to 0364406520
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INSERT INTO barcodes.barcode (barcode, assigned_on, status, sample_postmark_date, biomass_remaining, sequencing_status, obsolete, create_date_time, kit_id)
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SELECT '0364406520', assigned_on, status, sample_postmark_date, biomass_remaining, sequencing_status, obsolete, create_date_time, kit_id
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FROM barcodes.barcode
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WHERE barcode = '000031307';
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INSERT INTO barcodes.project_barcode (project_id, barcode)
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SELECT project_id, '0364406520'
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FROM barcodes.project_barcode
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WHERE barcode = '000031307';
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-- I'm omitting the sample_barcode_file and sample_barcode_file_md5 as they're
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-- no longer used and it would be inappropriate to directly clone a different
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-- barcode's associated file.
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INSERT INTO ag.ag_kit_barcodes (ag_kit_id, barcode, site_sampled, sample_date, sample_time, notes, moldy, overloaded, other, other_text, date_of_last_email, results_ready, withdrawn, refunded, deposited, source_id, latest_sample_information_update)
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SELECT ag_kit_id, '0364406520', site_sampled, sample_date, sample_time, notes, moldy, overloaded, other, other_text, date_of_last_email, results_ready, withdrawn, refunded, deposited, source_id, latest_sample_information_update
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FROM ag.ag_kit_barcodes
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WHERE barcode = '000031307';
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INSERT INTO ag.source_barcodes_surveys (barcode, survey_id)
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SELECT '0364406520', survey_id
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FROM ag.source_barcodes_surveys
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WHERE barcode = '000031307';
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INSERT INTO barcodes.barcode_scans (barcode, scan_timestamp, sample_status, technician_notes)
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SELECT '0364406520', scan_timestamp, sample_status, technician_notes
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FROM barcodes.barcode_scans
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WHERE barcode = '000031307';
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INSERT INTO ag.vioscreen_registry (account_id, source_id, sample_id, vio_id, deleted, registration_code)
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WITH temp_1 AS (
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SELECT vr.account_id, vr.source_id, vr.vio_id, vr.deleted, vr.registration_code
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FROM ag.vioscreen_registry vr
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INNER JOIN ag.ag_kit_barcodes akb ON vr.sample_id = akb.ag_kit_barcode_id
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WHERE akb.barcode = '000031307'
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),
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temp_2 AS (
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SELECT ag_kit_barcode_id
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FROM ag.ag_kit_barcodes
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WHERE barcode = '0364406520'
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)
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SELECT temp_1.account_id, temp_1.source_id, temp_2.ag_kit_barcode_id, temp_1.vio_id, temp_1.deleted, temp_1.registration_code FROM temp_1, temp_2;
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-- End copying 000031307 to 0364406520

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