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Many modern biomedical methods benefit from the availability of prior knowledge, for example about genes, proteins, or diseases. Knowledge graphs, i.e., representations of prior knowledge in machine-readable graph form, have become the quasi-standard for storing, manipulating, and sharing biomedical prior knowledge. To meet the needs of broad user communities in generating knowledge graphs, we have developed BioCypher, a modular framework for the creation of knowledge graphs based on ontologies, targeting single cell and spatial omics, microbiomics, metabolomics, and various multi-omics modelling and machine learning methods.
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In this workshop, we will learn about knowledge representations, knowledge graphs, ontologies, and data structures, and put this knowledge to practical use with BioCypher. The workshop will also contain a module on [information fusion](https://ontoweaver.readthedocs.io/en/latest/readme_sections/information_fusion.html), leveraging [OntoWeaver](https://ontoweaver.readthedocs.io/en/latest/) to combine data from different sources and joining this information into one single graph.
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In this workshop, we will learn about knowledge representations, knowledge graphs, ontologies, and data structures, and put this knowledge to practical use with BioCypher. The workshop will also contain a module on [information fusion](https://ontoweaver.readthedocs.io/en/latest/sections/information_fusion.html), leveraging [OntoWeaver](https://ontoweaver.readthedocs.io/en/latest/) to combine data from different sources and joining this information into one single graph.
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Further, we will learn how to utilize generative AI to upscale to more complex projects.
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## Workshop Aim
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- Tunca Dogan, Hacettepe University, Ankara, Turkey
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- Johann Dreo, Institut Pasteur, Paris, France
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- Carl Herrmann, Heidelberg University, Heidelberg, Germany
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- Claire Laudy, Thales & Institut Pasteur, Paris, France
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- Claire Laudy, ISIF & Institut Pasteur, Paris, France
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- Sebastian Lobentanzer, Helmholtz Munich, Germany
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- Steffen Vogler, Bayer AG, Berlin, Germany
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- Judith Wodke, Universität Greifswald, Germany
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- Judith Wodke, University Medicine Greifswald, Germany
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Stay tuned for updates to the workshop program!
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