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workshop: include full program
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‎docs/community/2026-workshop.md‎

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@@ -42,11 +42,11 @@ Learn how to create knowledge graphs from your data and import them into a graph
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<tbody>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>09:15-10:45</td>
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<td>Sebastian Lobentanzer, "The BioCypher ecosystem: Democratizing knowledge graphs"</td>
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<td>Sebastian Lobentanzer (Helmholtz Munich), "The BioCypher ecosystem: Democratizing knowledge graphs"</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td></td>
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<td>Steffen Vogler, "Knowledge management with BioCroissant and agentic automation"</td>
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<td>Steffen Vogler (Bayer AG, Berlin), "Knowledge management with BioCroissant and agentic automation"</td>
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</tr>
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<tr>
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<td colspan="2">coffee break</td>
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<tbody>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>09:15-10:45</td>
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<td>Sebastian Lobentanzer, "The BioCypher ecosystem: Democratizing knowledge graphs"</td>
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<td>Jan Baumbach (University of Hamburg, online), "Network Medicine GPT - A knowledge-graph based transformer for drug repurposing and disease module mining"</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td></td>
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<td>Steffen Vogler, "Knowledge management with BioCroissant and agentic automation"</td>
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<td>Johann Dreo (Institut Pasteur, Paris), "Explainable AI against Cancer - OntoWeaver's driving use-case"</td>
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</tr>
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<tr>
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<td colspan="2">coffee break</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>11:00-12:30</td>
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<td>hands-on session: "Knowledge graphs and BioCypher"</td>
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<td>hands-on session: "Hands-on OntoWeaver" (Johann Dreo)</td>
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</tr>
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<tr>
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<td colspan="2">lunch break</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>13:30-15:00</td>
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<td>hands-on session: "Knowledge graphs and BioCypher"</td>
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<td>hands-on session: "Adapters in BioCypher"</td>
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</tr>
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<tr>
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<td colspan="2">coffee break</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>15:15-16:45</td>
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<td>hands-on session: "Knowledge graphs and BioCypher"</td>
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<td>hands-on session: "BioCypher MCP"</td>
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</tr>
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</tbody>
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</table>
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<tbody>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>09:15-10:45</td>
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<td>Sebastian Lobentanzer, "The BioCypher ecosystem: Democratizing knowledge graphs"</td>
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<td>Carl Herrmann (Heidelberg University), "Strategies for building domain specific knowledge for single-cell genomics"</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td></td>
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<td>Steffen Vogler, "Knowledge management with BioCroissant and agentic automation"</td>
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<td>Judith Wodke (University Medicine Greifswald), "MeDaX-KG: The bioMedical Data eXploration Knowledge Graph"</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td></td>
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<td>Alberto Santos Delgado (Technical University of Denmark, Copenhagen), "Unlocking Disease Mechanisms via Microbial Graph Analysis"</td>
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</tr>
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<tr>
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<td colspan="2">coffee break</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>11:00-12:30</td>
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<td>hands-on session: "Knowledge graphs and BioCypher"</td>
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<td>hands-on session: "Agentic API in BioCypher"</td>
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</tr>
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<tr>
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<td colspan="2">lunch break</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>13:30-15:00</td>
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<td>hands-on session: "Knowledge graphs and BioCypher"</td>
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<td>hands-on session: "Harmonizing biomedical data"</td>
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</tr>
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<tr>
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<td colspan="2">coffee break</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>15:15-16:45</td>
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<td>hands-on session: "Knowledge graphs and BioCypher"</td>
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<td>hands-on session: "Harmonizing biomedical data"</td>
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</tr>
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</tbody>
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</table>
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<tbody>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>09:15-10:45</td>
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<td>Sebastian Lobentanzer, "The BioCypher ecosystem: Democratizing knowledge graphs"</td>
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<td>Tunca Dogan (Hacettepe University, Ankara), "Knowledge Graphs as AI-Ready Substrates: Integrating Heterogeneous Biomedical Data for Scalable Discovery and Reasoning"</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td></td>
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<td>Steffen Vogler, "Knowledge management with BioCroissant and agentic automation"</td>
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<td>Claire Laudy (ISIF & Institut Pasteur, Paris), "What is high-level information fusion, and why is it important?"</td>
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</tr>
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<tr>
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<td colspan="2">coffee break</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>11:00-12:30</td>
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<td>hands-on session: "Knowledge graphs and BioCypher"</td>
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<td>hands-on session: "OntoWeaver's fusion module (Johann Dreo)"</td>
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</tr>
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<tr>
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<td colspan="2">lunch break</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>13:30-15:00</td>
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<td>hands-on session: "Knowledge graphs and BioCypher"</td>
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<td>hands-on session: "Building Adapters in BioCypher"</td>
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</tr>
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<tr>
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<td colspan="2">coffee break</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>15:15-16:45</td>
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<td>hands-on session: "Knowledge graphs and BioCypher"</td>
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<td>hands-on session: "AI-supported open-source software development"</td>
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</tr>
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</tbody>
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</table>
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<tbody>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>09:15-10:45</td>
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<td>Sebastian Lobentanzer, "The BioCypher ecosystem: Democratizing knowledge graphs"</td>
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<td>Workshop Highlights</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td></td>
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<td>Steffen Vogler, "Knowledge management with BioCroissant and agentic automation"</td>
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<td>Contributing to BioCypher on GitHub</td>
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</tr>
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<tr>
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<td colspan="2">coffee break</td>
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</tr>
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<tr style="background-color:var(--md-primary-fg-color); color:var(--md-primary-bg-color);">
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<td>11:00-12:30</td>
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<td>hands-on session: "Knowledge graphs and BioCypher"</td>
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<td>Quantify participant achievements, feedback and workshop closing"</td>
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</tr>
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</tbody>
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</table>
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- Steffen Vogler, Bayer AG, Berlin, Germany
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- Judith Wodke, University Medicine Greifswald, Germany
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Stay tuned for updates to the workshop program!
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## Prerequisites
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!!! warning "Requirements"

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