Commit d2cb5b9
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update submodules
1 parent 09b605b commit d2cb5b9
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Submodule biochatter updated 45 files
- .bumpversion.cfg+1-1
- .gitignore+2-1
- benchmark/data/benchmark_edam_mcp_nfcore_modules_data.yaml+526
- benchmark/load_dataset.py+5-1
- benchmark/results/mcp_edam_qa.csv+532
- benchmark/results/mcp_edam_qa_baseline.csv+532
- benchmark/results/mcp_edam_qa_baseline_failure_modes.csv+508
- benchmark/results/mcp_edam_qa_baseline_traces.jsonl+532
- benchmark/results/mcp_edam_qa_failure_modes.csv+515
- benchmark/results/mcp_edam_qa_traces.jsonl+532
- benchmark/results/processed/correlations.txt+1-1
- benchmark/results/processed/overview-quantisation.csv+1-1
- benchmark/results/processed/overview.csv+79-79
- benchmark/scripts/visualize_mcp_baseline_comparison.py+217-104
- biochatter/llm_connect/available_models.py+32
- biochatter/llm_connect/langchain.py+4-2
- biochatter/llm_connect/openai.py+3-1
- docs/images/boxplot-medical-exam-domain.png
- docs/images/boxplot-medical-exam-language-domain.png
- docs/images/boxplot-medical-exam-language.png
- docs/images/boxplot-medical-exam-task.png
- docs/images/boxplot-naive-vs-biochatter.pdf
- docs/images/boxplot-naive-vs-biochatter.png
- docs/images/boxplot-per-quantisation.png
- docs/images/boxplot-tasks.png
- docs/images/boxplot-text2cypher.png
- docs/images/dotplot-per-task.pdf
- docs/images/dotplot-per-task.png
- docs/images/histogram-image-caption-confidence.png
- docs/images/scatter-naive-vs-biochatter.pdf
- docs/images/scatter-naive-vs-biochatter.png
- docs/images/scatter-per-quantisation-name.pdf
- docs/images/scatter-per-quantisation-name.png
- docs/images/scatter-quantisation-accuracy.pdf
- docs/images/scatter-quantisation-accuracy.png
- docs/images/scatter-size-accuracy.pdf
- docs/images/scatter-size-accuracy.png
- docs/images/stripplot-extraction-tasks.png
- docs/images/stripplot-per-model.png
- docs/images/stripplot-rag-tasks.pdf
- docs/images/stripplot-rag-tasks.png
- docs/images/stripplot-text2cypher-safety.png
- docs/images/violin-naive-vs-biochatter.pdf
- docs/images/violin-naive-vs-biochatter.png
- pyproject.toml+1-1
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