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| 1 | +# biodosetools 3.4.0 (2020-10-11) |
| 2 | + |
| 3 | +* Removed all non-ASCII characters. |
| 4 | +* Major rehaul of reports. |
| 5 | +* Added "Report bug" button on home screen and cleaned up `dashboard_*()` code. |
| 6 | +* Removed dependencies on {stringr} package. |
| 7 | +* Initial `utils::citation()` support via CITATION file. |
| 8 | +* Minimal version of R bumped to 3.5.0. |
| 9 | +* Minimal version of {dplyr} bumped to 1.0.0. |
| 10 | + |
| 11 | +## Bug fixes |
| 12 | + |
| 13 | +* Replaced `C`, `α`, `β` variables (and derivatives) by `coeff_C`, `coeff_alpha`, `coeff_beta`. |
| 14 | +* Fixed error in genome_fraction parsing for translocations in `estimate_partial_dolphin()`. |
| 15 | +* Fixed count/case data standard error column names replacements. |
| 16 | +* Fixed minipage issue when using more than 12 columns in {knitr} tables with column name replacements, by using `format = "latex", escape = FALSE` parameters in `kable()` call. |
| 17 | +* Supress YAML warning when using `!expr` in PDF reports. See https://github.com/rstudio/rstudio/issues/7545. |
| 18 | + |
| 19 | +## New functions |
| 20 | + |
| 21 | +* `fix_coeff_names()`, to fix coefficient names in reports. |
| 22 | +* `fix_count_data_names()`, to fix count/case data column names in PDF reports. |
| 23 | +* `to_title()`, to replace `stringr::str_to_title()` using base R. |
| 24 | + |
| 25 | +## Reports improvements |
| 26 | + |
| 27 | +* New PDF reports, which are now the default output format. |
| 28 | +* Improved HTML reports styling. |
| 29 | +* Added explicit M-FISH usage in translocation reports. |
| 30 | +* Added assay name in report titles. |
| 31 | + |
1 | 32 | # biodosetools 3.3.1 (2020-10-07) |
2 | 33 |
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3 | 34 | ## Bug fixes |
@@ -58,7 +89,7 @@ All calculations functions previously provided in `inst/app/calcs` have been mad |
58 | 89 |
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59 | 90 | # biodosetools 3.1.0 (2019-10-26) |
60 | 91 |
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61 | | -Unofficial release (didn't change version on `DESCRIPTION` file). This includes some of the changes I discussed with David in Stockholm. |
| 92 | +Unofficial release (wasn't changed on `DESCRIPTION` file). This includes some of the changes discussed with David in Stockholm (ERPW19). |
62 | 93 |
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63 | 94 | ## New features |
64 | 95 |
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