Skip to content

Commit 202fb63

Browse files
committed
Deploying to gh-pages from @ 19585d2 🚀
1 parent 20d5f27 commit 202fb63

4 files changed

Lines changed: 5 additions & 5 deletions

File tree

coverage/coverage.xml

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
<?xml version="1.0" ?>
2-
<coverage version="7.14.0" timestamp="1779809124221" lines-valid="1555" lines-covered="320" line-rate="0.2058" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0">
2+
<coverage version="7.14.0" timestamp="1779809131321" lines-valid="1555" lines-covered="320" line-rate="0.2058" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0">
33
<!-- Generated by coverage.py: https://coverage.readthedocs.io/en/7.14.0 -->
44
<!-- Based on https://raw.githubusercontent.com/cobertura/web/master/htdocs/xml/coverage-04.dtd -->
55
<sources>

coverage/status.json

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1 +1 @@
1-
{"note":"This file is an internal implementation detail to speed up HTML report generation. Its format can change at any time. You might be looking for the JSON report: https://coverage.rtfd.io/cmd.html#cmd-json","format":5,"version":"7.14.0","globals":"3bd139bfcbfc47204572fa132f8beaa2","files":{"z_4cd8813ccb430c5e___init___py":{"hash":"a64bee0f0af5b911c01157f695cd0b6a","index":{"url":"z_4cd8813ccb430c5e___init___py.html","file":"biobb_gromacs/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":4,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d___init___py":{"hash":"c1c3047c9b0b44877343db6a2ebbc892","index":{"url":"z_d969b490049b982d___init___py.html","file":"biobb_gromacs/gromacs/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":14,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_common_py":{"hash":"814790ac78d9d56f47d6436a14c79449","index":{"url":"z_d969b490049b982d_common_py.html","file":"biobb_gromacs/gromacs/common.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":204,"n_excluded":0,"n_missing":170,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_convert_tpr_py":{"hash":"0f76f2487e18eca5404cf7fdf7c96368","index":{"url":"z_d969b490049b982d_convert_tpr_py.html","file":"biobb_gromacs/gromacs/convert_tpr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":54,"n_excluded":0,"n_missing":54,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_editconf_py":{"hash":"0636d04b5c821701433301b4916f9608","index":{"url":"z_d969b490049b982d_editconf_py.html","file":"biobb_gromacs/gromacs/editconf.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":61,"n_excluded":0,"n_missing":47,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_genion_py":{"hash":"ff0249e54e667cc0a04e4fa0de6d790a","index":{"url":"z_d969b490049b982d_genion_py.html","file":"biobb_gromacs/gromacs/genion.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":79,"n_excluded":0,"n_missing":64,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_genrestr_py":{"hash":"e214c95fce99dfc50198d436c21a81e9","index":{"url":"z_d969b490049b982d_genrestr_py.html","file":"biobb_gromacs/gromacs/genrestr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":59,"n_excluded":0,"n_missing":45,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_gmxselect_py":{"hash":"60f739bf7516b5d7b380a4c2e84e5801","index":{"url":"z_d969b490049b982d_gmxselect_py.html","file":"biobb_gromacs/gromacs/gmxselect.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":65,"n_excluded":0,"n_missing":13,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_grompp_py":{"hash":"932514bea35734e61aa9e30c9592db94","index":{"url":"z_d969b490049b982d_grompp_py.html","file":"biobb_gromacs/gromacs/grompp.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":64,"n_excluded":0,"n_missing":48,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_grompp_mdrun_py":{"hash":"e88ff54f1b6cd2cc9c6d615898c52f8a","index":{"url":"z_d969b490049b982d_grompp_mdrun_py.html","file":"biobb_gromacs/gromacs/grompp_mdrun.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":60,"n_excluded":0,"n_missing":45,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_make_ndx_py":{"hash":"8223dd1d658edb9d8ae6b245b645d573","index":{"url":"z_d969b490049b982d_make_ndx_py.html","file":"biobb_gromacs/gromacs/make_ndx.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":56,"n_excluded":0,"n_missing":42,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_mdrun_py":{"hash":"23590ec7eb28ad8e0f5fe77fd174d71b","index":{"url":"z_d969b490049b982d_mdrun_py.html","file":"biobb_gromacs/gromacs/mdrun.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":142,"n_excluded":0,"n_missing":127,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_mdrun_plumed_py":{"hash":"3183dd12190555a06e11f0715f1f7690","index":{"url":"z_d969b490049b982d_mdrun_plumed_py.html","file":"biobb_gromacs/gromacs/mdrun_plumed.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":175,"n_excluded":0,"n_missing":157,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_pdb2gmx_py":{"hash":"ced01044e7af21794aacaa621837da37","index":{"url":"z_d969b490049b982d_pdb2gmx_py.html","file":"biobb_gromacs/gromacs/pdb2gmx.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":126,"n_excluded":0,"n_missing":110,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_solvate_py":{"hash":"cf8dcf45c1485c0fa6d0a0f6c9536fa1","index":{"url":"z_d969b490049b982d_solvate_py.html","file":"biobb_gromacs/gromacs/solvate.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":63,"n_excluded":0,"n_missing":48,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_trjcat_py":{"hash":"6a911d5dab42c8bfd950cd002d5d5117","index":{"url":"z_d969b490049b982d_trjcat_py.html","file":"biobb_gromacs/gromacs/trjcat.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":53,"n_excluded":0,"n_missing":39,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_ca4c78eb36143858___init___py":{"hash":"f803fd5909b33fe1f2fedfe988833f34","index":{"url":"z_ca4c78eb36143858___init___py.html","file":"biobb_gromacs/gromacs_extra/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":4,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_ca4c78eb36143858_append_ligand_py":{"hash":"34e47a8b7643e668945f84d89a65ca0b","index":{"url":"z_ca4c78eb36143858_append_ligand_py.html","file":"biobb_gromacs/gromacs_extra/append_ligand.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":123,"n_excluded":0,"n_missing":108,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_ca4c78eb36143858_ndx2resttop_py":{"hash":"683c12328d56edfcd15cb4fe2b24886c","index":{"url":"z_ca4c78eb36143858_ndx2resttop_py.html","file":"biobb_gromacs/gromacs_extra/ndx2resttop.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":137,"n_excluded":0,"n_missing":118,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_bfca24d363d6bdc9___init___py":{"hash":"dee4451f0a2720f721cb6fd38853794d","index":{"url":"z_bfca24d363d6bdc9___init___py.html","file":"biobb_gromacs/test/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":0,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_5fa12357f0a3c849_test_gmxselect_py":{"hash":"45ac42b38128a48f0b0676bf1d8dd34b","index":{"url":"z_5fa12357f0a3c849_test_gmxselect_py.html","file":"biobb_gromacs/test/unitests/test_gromacs/test_gmxselect.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":12,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}}}}
1+
{"note":"This file is an internal implementation detail to speed up HTML report generation. Its format can change at any time. You might be looking for the JSON report: https://coverage.rtfd.io/cmd.html#cmd-json","format":5,"version":"7.14.0","globals":"3bd139bfcbfc47204572fa132f8beaa2","files":{"z_4cd8813ccb430c5e___init___py":{"hash":"a64bee0f0af5b911c01157f695cd0b6a","index":{"url":"z_4cd8813ccb430c5e___init___py.html","file":"biobb_gromacs/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":4,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d___init___py":{"hash":"c1c3047c9b0b44877343db6a2ebbc892","index":{"url":"z_d969b490049b982d___init___py.html","file":"biobb_gromacs/gromacs/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":14,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_common_py":{"hash":"814790ac78d9d56f47d6436a14c79449","index":{"url":"z_d969b490049b982d_common_py.html","file":"biobb_gromacs/gromacs/common.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":204,"n_excluded":0,"n_missing":170,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_convert_tpr_py":{"hash":"0f76f2487e18eca5404cf7fdf7c96368","index":{"url":"z_d969b490049b982d_convert_tpr_py.html","file":"biobb_gromacs/gromacs/convert_tpr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":54,"n_excluded":0,"n_missing":54,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_editconf_py":{"hash":"0636d04b5c821701433301b4916f9608","index":{"url":"z_d969b490049b982d_editconf_py.html","file":"biobb_gromacs/gromacs/editconf.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":61,"n_excluded":0,"n_missing":47,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_genion_py":{"hash":"ff0249e54e667cc0a04e4fa0de6d790a","index":{"url":"z_d969b490049b982d_genion_py.html","file":"biobb_gromacs/gromacs/genion.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":79,"n_excluded":0,"n_missing":64,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_genrestr_py":{"hash":"e214c95fce99dfc50198d436c21a81e9","index":{"url":"z_d969b490049b982d_genrestr_py.html","file":"biobb_gromacs/gromacs/genrestr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":59,"n_excluded":0,"n_missing":45,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_gmxselect_py":{"hash":"60f739bf7516b5d7b380a4c2e84e5801","index":{"url":"z_d969b490049b982d_gmxselect_py.html","file":"biobb_gromacs/gromacs/gmxselect.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":65,"n_excluded":0,"n_missing":13,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_grompp_py":{"hash":"932514bea35734e61aa9e30c9592db94","index":{"url":"z_d969b490049b982d_grompp_py.html","file":"biobb_gromacs/gromacs/grompp.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":64,"n_excluded":0,"n_missing":48,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_grompp_mdrun_py":{"hash":"e88ff54f1b6cd2cc9c6d615898c52f8a","index":{"url":"z_d969b490049b982d_grompp_mdrun_py.html","file":"biobb_gromacs/gromacs/grompp_mdrun.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":60,"n_excluded":0,"n_missing":45,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_make_ndx_py":{"hash":"8223dd1d658edb9d8ae6b245b645d573","index":{"url":"z_d969b490049b982d_make_ndx_py.html","file":"biobb_gromacs/gromacs/make_ndx.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":56,"n_excluded":0,"n_missing":42,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_mdrun_py":{"hash":"23590ec7eb28ad8e0f5fe77fd174d71b","index":{"url":"z_d969b490049b982d_mdrun_py.html","file":"biobb_gromacs/gromacs/mdrun.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":142,"n_excluded":0,"n_missing":127,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_mdrun_plumed_py":{"hash":"3183dd12190555a06e11f0715f1f7690","index":{"url":"z_d969b490049b982d_mdrun_plumed_py.html","file":"biobb_gromacs/gromacs/mdrun_plumed.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":175,"n_excluded":0,"n_missing":157,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_pdb2gmx_py":{"hash":"ced01044e7af21794aacaa621837da37","index":{"url":"z_d969b490049b982d_pdb2gmx_py.html","file":"biobb_gromacs/gromacs/pdb2gmx.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":126,"n_excluded":0,"n_missing":110,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_solvate_py":{"hash":"cf8dcf45c1485c0fa6d0a0f6c9536fa1","index":{"url":"z_d969b490049b982d_solvate_py.html","file":"biobb_gromacs/gromacs/solvate.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":63,"n_excluded":0,"n_missing":48,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_d969b490049b982d_trjcat_py":{"hash":"6a911d5dab42c8bfd950cd002d5d5117","index":{"url":"z_d969b490049b982d_trjcat_py.html","file":"biobb_gromacs/gromacs/trjcat.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":53,"n_excluded":0,"n_missing":39,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_ca4c78eb36143858___init___py":{"hash":"f803fd5909b33fe1f2fedfe988833f34","index":{"url":"z_ca4c78eb36143858___init___py.html","file":"biobb_gromacs/gromacs_extra/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":4,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_ca4c78eb36143858_append_ligand_py":{"hash":"34e47a8b7643e668945f84d89a65ca0b","index":{"url":"z_ca4c78eb36143858_append_ligand_py.html","file":"biobb_gromacs/gromacs_extra/append_ligand.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":123,"n_excluded":0,"n_missing":108,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_ca4c78eb36143858_ndx2resttop_py":{"hash":"683c12328d56edfcd15cb4fe2b24886c","index":{"url":"z_ca4c78eb36143858_ndx2resttop_py.html","file":"biobb_gromacs/gromacs_extra/ndx2resttop.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":137,"n_excluded":0,"n_missing":118,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_bfca24d363d6bdc9___init___py":{"hash":"22a55c70b987e14d3f30c99eef952833","index":{"url":"z_bfca24d363d6bdc9___init___py.html","file":"biobb_gromacs/test/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":0,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_5fa12357f0a3c849_test_gmxselect_py":{"hash":"45ac42b38128a48f0b0676bf1d8dd34b","index":{"url":"z_5fa12357f0a3c849_test_gmxselect_py.html","file":"biobb_gromacs/test/unitests/test_gromacs/test_gmxselect.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":12,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}}}}

junit/junit.xml

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1 +1 @@
1-
<?xml version="1.0" encoding="utf-8"?><testsuites name="pytest tests"><testsuite name="pytest" errors="0" failures="0" skipped="0" tests="1" time="1.420" timestamp="2026-05-26T15:25:22.021230+00:00" hostname="ghr_stack_gh_runner"><testcase classname="biobb_gromacs.test.unitests.test_gromacs.test_gmxselect.TestGmxselect" name="test_select" time="0.362" /></testsuite></testsuites>
1+
<?xml version="1.0" encoding="utf-8"?><testsuites name="pytest tests"><testsuite name="pytest" errors="0" failures="0" skipped="0" tests="1" time="1.311" timestamp="2026-05-26T15:25:29.247743+00:00" hostname="ghr_stack_gh_runner"><testcase classname="biobb_gromacs.test.unitests.test_gromacs.test_gmxselect.TestGmxselect" name="test_select" time="0.344" /></testsuite></testsuites>

0 commit comments

Comments
 (0)