Skip to content

Commit 61c9877

Browse files
gbayarrigbayarri
committed
Fixed EDAM formats
1 parent 9846280 commit 61c9877

8 files changed

Lines changed: 120 additions & 120 deletions

File tree

‎biobb_mem/json_schemas/lpp_assign_leaflets.json‎

Lines changed: 28 additions & 28 deletions
Original file line numberDiff line numberDiff line change
@@ -45,62 +45,62 @@
4545
{
4646
"extension": ".*\\.crd$",
4747
"description": "Path to the input structure or topology file",
48-
"edam": "3878"
48+
"edam": "format_3878"
4949
},
5050
{
5151
"extension": ".*\\.gro$",
5252
"description": "Path to the input structure or topology file",
53-
"edam": "2033"
53+
"edam": "format_2033"
5454
},
5555
{
5656
"extension": ".*\\.mdcrd$",
5757
"description": "Path to the input structure or topology file",
58-
"edam": "3878"
58+
"edam": "format_3878"
5959
},
6060
{
6161
"extension": ".*\\.mol2$",
6262
"description": "Path to the input structure or topology file",
63-
"edam": "3816"
63+
"edam": "format_3816"
6464
},
6565
{
6666
"extension": ".*\\.pdb$",
6767
"description": "Path to the input structure or topology file",
68-
"edam": "1476"
68+
"edam": "format_1476"
6969
},
7070
{
7171
"extension": ".*\\.pdbqt$",
7272
"description": "Path to the input structure or topology file",
73-
"edam": "1476"
73+
"edam": "format_1476"
7474
},
7575
{
7676
"extension": ".*\\.prmtop$",
7777
"description": "Path to the input structure or topology file",
78-
"edam": "3881"
78+
"edam": "format_3881"
7979
},
8080
{
8181
"extension": ".*\\.psf$",
8282
"description": "Path to the input structure or topology file",
83-
"edam": "3882"
83+
"edam": "format_3882"
8484
},
8585
{
8686
"extension": ".*\\.top$",
8787
"description": "Path to the input structure or topology file",
88-
"edam": "3881"
88+
"edam": "format_3881"
8989
},
9090
{
9191
"extension": ".*\\.tpr$",
9292
"description": "Path to the input structure or topology file",
93-
"edam": "2333"
93+
"edam": "format_2333"
9494
},
9595
{
9696
"extension": ".*\\.xml$",
9797
"description": "Path to the input structure or topology file",
98-
"edam": "2332"
98+
"edam": "format_2332"
9999
},
100100
{
101101
"extension": ".*\\.xyz$",
102102
"description": "Path to the input structure or topology file",
103-
"edam": "3887"
103+
"edam": "format_3887"
104104
}
105105
]
106106
},
@@ -131,82 +131,82 @@
131131
{
132132
"extension": ".*\\.arc$",
133133
"description": "Path to the input trajectory to be processed",
134-
"edam": "2333"
134+
"edam": "format_2333"
135135
},
136136
{
137137
"extension": ".*\\.crd$",
138138
"description": "Path to the input trajectory to be processed",
139-
"edam": "3878"
139+
"edam": "format_3878"
140140
},
141141
{
142142
"extension": ".*\\.dcd$",
143143
"description": "Path to the input trajectory to be processed",
144-
"edam": "3878"
144+
"edam": "format_3878"
145145
},
146146
{
147147
"extension": ".*\\.ent$",
148148
"description": "Path to the input trajectory to be processed",
149-
"edam": "1476"
149+
"edam": "format_1476"
150150
},
151151
{
152152
"extension": ".*\\.gro$",
153153
"description": "Path to the input trajectory to be processed",
154-
"edam": "2033"
154+
"edam": "format_2033"
155155
},
156156
{
157157
"extension": ".*\\.inpcrd$",
158158
"description": "Path to the input trajectory to be processed",
159-
"edam": "3878"
159+
"edam": "format_3878"
160160
},
161161
{
162162
"extension": ".*\\.mdcrd$",
163163
"description": "Path to the input trajectory to be processed",
164-
"edam": "3878"
164+
"edam": "format_3878"
165165
},
166166
{
167167
"extension": ".*\\.mol2$",
168168
"description": "Path to the input trajectory to be processed",
169-
"edam": "3816"
169+
"edam": "format_3816"
170170
},
171171
{
172172
"extension": ".*\\.nc$",
173173
"description": "Path to the input trajectory to be processed",
174-
"edam": "3650"
174+
"edam": "format_3650"
175175
},
176176
{
177177
"extension": ".*\\.pdb$",
178178
"description": "Path to the input trajectory to be processed",
179-
"edam": "1476"
179+
"edam": "format_1476"
180180
},
181181
{
182182
"extension": ".*\\.pdbqt$",
183183
"description": "Path to the input trajectory to be processed",
184-
"edam": "1476"
184+
"edam": "format_1476"
185185
},
186186
{
187187
"extension": ".*\\.restrt$",
188188
"description": "Path to the input trajectory to be processed",
189-
"edam": "3886"
189+
"edam": "format_3886"
190190
},
191191
{
192192
"extension": ".*\\.tng$",
193193
"description": "Path to the input trajectory to be processed",
194-
"edam": "3876"
194+
"edam": "format_3876"
195195
},
196196
{
197197
"extension": ".*\\.trr$",
198198
"description": "Path to the input trajectory to be processed",
199-
"edam": "3910"
199+
"edam": "format_3910"
200200
},
201201
{
202202
"extension": ".*\\.xtc$",
203203
"description": "Path to the input trajectory to be processed",
204-
"edam": "3875"
204+
"edam": "format_3875"
205205
},
206206
{
207207
"extension": ".*\\.xyz$",
208208
"description": "Path to the input trajectory to be processed",
209-
"edam": "3887"
209+
"edam": "format_3887"
210210
}
211211
]
212212
},

‎biobb_mem/json_schemas/lpp_flip_flop.json‎

Lines changed: 28 additions & 28 deletions
Original file line numberDiff line numberDiff line change
@@ -46,62 +46,62 @@
4646
{
4747
"extension": ".*\\.crd$",
4848
"description": "Path to the input structure or topology file",
49-
"edam": "3878"
49+
"edam": "format_3878"
5050
},
5151
{
5252
"extension": ".*\\.gro$",
5353
"description": "Path to the input structure or topology file",
54-
"edam": "2033"
54+
"edam": "format_2033"
5555
},
5656
{
5757
"extension": ".*\\.mdcrd$",
5858
"description": "Path to the input structure or topology file",
59-
"edam": "3878"
59+
"edam": "format_3878"
6060
},
6161
{
6262
"extension": ".*\\.mol2$",
6363
"description": "Path to the input structure or topology file",
64-
"edam": "3816"
64+
"edam": "format_3816"
6565
},
6666
{
6767
"extension": ".*\\.pdb$",
6868
"description": "Path to the input structure or topology file",
69-
"edam": "1476"
69+
"edam": "format_1476"
7070
},
7171
{
7272
"extension": ".*\\.pdbqt$",
7373
"description": "Path to the input structure or topology file",
74-
"edam": "1476"
74+
"edam": "format_1476"
7575
},
7676
{
7777
"extension": ".*\\.prmtop$",
7878
"description": "Path to the input structure or topology file",
79-
"edam": "3881"
79+
"edam": "format_3881"
8080
},
8181
{
8282
"extension": ".*\\.psf$",
8383
"description": "Path to the input structure or topology file",
84-
"edam": "3882"
84+
"edam": "format_3882"
8585
},
8686
{
8787
"extension": ".*\\.top$",
8888
"description": "Path to the input structure or topology file",
89-
"edam": "3881"
89+
"edam": "format_3881"
9090
},
9191
{
9292
"extension": ".*\\.tpr$",
9393
"description": "Path to the input structure or topology file",
94-
"edam": "2333"
94+
"edam": "format_2333"
9595
},
9696
{
9797
"extension": ".*\\.xml$",
9898
"description": "Path to the input structure or topology file",
99-
"edam": "2332"
99+
"edam": "format_2332"
100100
},
101101
{
102102
"extension": ".*\\.xyz$",
103103
"description": "Path to the input structure or topology file",
104-
"edam": "3887"
104+
"edam": "format_3887"
105105
}
106106
]
107107
},
@@ -132,82 +132,82 @@
132132
{
133133
"extension": ".*\\.arc$",
134134
"description": "Path to the input trajectory to be processed",
135-
"edam": "2333"
135+
"edam": "format_2333"
136136
},
137137
{
138138
"extension": ".*\\.crd$",
139139
"description": "Path to the input trajectory to be processed",
140-
"edam": "3878"
140+
"edam": "format_3878"
141141
},
142142
{
143143
"extension": ".*\\.dcd$",
144144
"description": "Path to the input trajectory to be processed",
145-
"edam": "3878"
145+
"edam": "format_3878"
146146
},
147147
{
148148
"extension": ".*\\.ent$",
149149
"description": "Path to the input trajectory to be processed",
150-
"edam": "1476"
150+
"edam": "format_1476"
151151
},
152152
{
153153
"extension": ".*\\.gro$",
154154
"description": "Path to the input trajectory to be processed",
155-
"edam": "2033"
155+
"edam": "format_2033"
156156
},
157157
{
158158
"extension": ".*\\.inpcrd$",
159159
"description": "Path to the input trajectory to be processed",
160-
"edam": "3878"
160+
"edam": "format_3878"
161161
},
162162
{
163163
"extension": ".*\\.mdcrd$",
164164
"description": "Path to the input trajectory to be processed",
165-
"edam": "3878"
165+
"edam": "format_3878"
166166
},
167167
{
168168
"extension": ".*\\.mol2$",
169169
"description": "Path to the input trajectory to be processed",
170-
"edam": "3816"
170+
"edam": "format_3816"
171171
},
172172
{
173173
"extension": ".*\\.nc$",
174174
"description": "Path to the input trajectory to be processed",
175-
"edam": "3650"
175+
"edam": "format_3650"
176176
},
177177
{
178178
"extension": ".*\\.pdb$",
179179
"description": "Path to the input trajectory to be processed",
180-
"edam": "1476"
180+
"edam": "format_1476"
181181
},
182182
{
183183
"extension": ".*\\.pdbqt$",
184184
"description": "Path to the input trajectory to be processed",
185-
"edam": "1476"
185+
"edam": "format_1476"
186186
},
187187
{
188188
"extension": ".*\\.restrt$",
189189
"description": "Path to the input trajectory to be processed",
190-
"edam": "3886"
190+
"edam": "format_3886"
191191
},
192192
{
193193
"extension": ".*\\.tng$",
194194
"description": "Path to the input trajectory to be processed",
195-
"edam": "3876"
195+
"edam": "format_3876"
196196
},
197197
{
198198
"extension": ".*\\.trr$",
199199
"description": "Path to the input trajectory to be processed",
200-
"edam": "3910"
200+
"edam": "format_3910"
201201
},
202202
{
203203
"extension": ".*\\.xtc$",
204204
"description": "Path to the input trajectory to be processed",
205-
"edam": "3875"
205+
"edam": "format_3875"
206206
},
207207
{
208208
"extension": ".*\\.xyz$",
209209
"description": "Path to the input trajectory to be processed",
210-
"edam": "3887"
210+
"edam": "format_3887"
211211
}
212212
]
213213
},

0 commit comments

Comments
 (0)