Deploying to gh-pages from @ bbc0b6e 🚀

Author: RubenChM

coverage/class_index.html

@@ -1,6 +1,6 @@
 <?xml version="1.0" ?>
-<coverage version="7.10.4" timestamp="1765896977860" lines-valid="1403" lines-covered="1243" line-rate="0.886" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0">
-	<!-- Generated by coverage.py: https://coverage.readthedocs.io/en/7.10.4 -->
+<coverage version="7.13.0" timestamp="1765897165543" lines-valid="1403" lines-covered="1243" line-rate="0.886" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0">
+	<!-- Generated by coverage.py: https://coverage.readthedocs.io/en/7.13.0 -->
 	<!-- Based on https://raw.githubusercontent.com/cobertura/web/master/htdocs/xml/coverage-04.dtd -->
 	<sources>
 		<source>/home/gbayarri/actions-runner-bioexcel/_work/biobb_structure_utils/biobb_structure_utils</source>

coverage/coverage.xml

@@ -1,5 +1,5 @@
 // Licensed under the Apache License: http://www.apache.org/licenses/LICENSE-2.0
-// For details: https://github.com/nedbat/coveragepy/blob/master/NOTICE.txt
+// For details: https://github.com/coveragepy/coveragepy/blob/main/NOTICE.txt
 
 // Coverage.py HTML report browser code.
 /*jslint browser: true, sloppy: true, vars: true, plusplus: true, maxerr: 50, indent: 4 */
@@ -140,12 +140,15 @@ coverage.wire_up_filter = function () {
     const table_body_rows = table.querySelectorAll("tbody tr");
     const no_rows = document.getElementById("no_rows");
 
+    const footer = table.tFoot.rows[0];
+    const ratio_columns = Array.from(footer.cells).map(cell => Boolean(cell.dataset.ratio));
+
     // Observe filter keyevents.
     const filter_handler = (event => {
         // Keep running total of each metric, first index contains number of shown rows
-        const totals = new Array(table.rows[0].cells.length).fill(0);
-        // Accumulate the percentage as fraction
-        totals[totals.length - 1] = { "numer": 0, "denom": 0 };  // nosemgrep: eslint.detect-object-injection
+        const totals = ratio_columns.map(
+            is_ratio => is_ratio ? {"numer": 0, "denom": 0} : 0
+        );
 
         var text = document.getElementById("filter").value;
         // Store filter value
@@ -191,11 +194,11 @@ coverage.wire_up_filter = function () {
             for (let column = 0; column < totals.length; column++) {
                 // Accumulate dynamic totals
                 cell = row.cells[column]  // nosemgrep: eslint.detect-object-injection
-                if (cell.classList.contains("name")) {
+                if (cell.matches(".name, .spacer")) {
                     continue;
                 }
-                if (column === totals.length - 1) {
-                    // Last column contains percentage
+                if (ratio_columns[column] && cell.dataset.ratio) {
+                    // Column stores a ratio
                     const [numer, denom] = cell.dataset.ratio.split(" ");
                     totals[column]["numer"] += parseInt(numer, 10);  // nosemgrep: eslint.detect-object-injection
                     totals[column]["denom"] += parseInt(denom, 10);  // nosemgrep: eslint.detect-object-injection
@@ -218,17 +221,16 @@ coverage.wire_up_filter = function () {
         no_rows.style.display = null;
         table.style.display = null;
 
-        const footer = table.tFoot.rows[0];
         // Calculate new dynamic sum values based on visible rows.
         for (let column = 0; column < totals.length; column++) {
             // Get footer cell element.
             const cell = footer.cells[column];  // nosemgrep: eslint.detect-object-injection
-            if (cell.classList.contains("name")) {
+            if (cell.matches(".name, .spacer")) {
                 continue;
             }
 
             // Set value into dynamic footer cell element.
-            if (column === totals.length - 1) {
+            if (ratio_columns[column]) {
                 // Percentage column uses the numerator and denominator,
                 // and adapts to the number of decimal places.
                 const match = /\.([0-9]+)/.exec(cell.textContent);

coverage/coverage_html_cb_6fb7b396.js coverage/coverage_html_cb_bcae5fc4.jscoverage/coverage_html_cb_6fb7b396.js renamed to coverage/coverage_html_cb_bcae5fc4.js

@@ -1,6 +1,6 @@
 @charset "UTF-8";
 /* Licensed under the Apache License: http://www.apache.org/licenses/LICENSE-2.0 */
-/* For details: https://github.com/nedbat/coveragepy/blob/master/NOTICE.txt */
+/* For details: https://github.com/coveragepy/coveragepy/blob/main/NOTICE.txt */
 /* Don't edit this .css file. Edit the .scss file instead! */
 html, body, h1, h2, h3, p, table, td, th { margin: 0; padding: 0; border: 0; font-weight: inherit; font-style: inherit; font-size: 100%; font-family: inherit; vertical-align: baseline; }
 
@@ -328,16 +328,24 @@ kbd { border: 1px solid black; border-color: #888 #333 #333 #888; padding: .1em
 
 #index table.index { margin-left: -.5em; }
 
-#index td, #index th { text-align: right; padding: .25em .5em; border-bottom: 1px solid #eee; }
+#index td, #index th { text-align: right; vertical-align: baseline; padding: .25em .5em; border-bottom: 1px solid #eee; }
 
 @media (prefers-color-scheme: dark) { #index td, #index th { border-color: #333; } }
 
 #index td.name, #index th.name { text-align: left; width: auto; font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, Cantarell, "Helvetica Neue", sans-serif; min-width: 15em; }
 
-#index th { font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, Cantarell, "Helvetica Neue", sans-serif; font-style: italic; color: #333; cursor: pointer; }
+#index td.left, #index th.left { text-align: left; }
+
+#index td.spacer, #index th.spacer { border: none; padding: 0; }
+
+#index td.spacer:hover, #index th.spacer:hover { background: inherit; }
+
+#index th { font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, Cantarell, "Helvetica Neue", sans-serif; font-style: italic; color: #333; border-color: #ccc; cursor: pointer; }
 
 @media (prefers-color-scheme: dark) { #index th { color: #ddd; } }
 
+@media (prefers-color-scheme: dark) { #index th { border-color: #444; } }
+
 #index th:hover { background: #eee; }
 
 @media (prefers-color-scheme: dark) { #index th:hover { background: #333; } }
@@ -352,13 +360,17 @@ kbd { border: 1px solid black; border-color: #888 #333 #333 #888; padding: .1em
 
 #index th[aria-sort="descending"] .arrows::after { content: " ▼"; }
 
+#index tr.grouphead th { cursor: default; font-style: normal; border-color: #999; }
+
+@media (prefers-color-scheme: dark) { #index tr.grouphead th { border-color: #777; } }
+
 #index td.name { font-size: 1.15em; }
 
 #index td.name a { text-decoration: none; color: inherit; }
 
 #index td.name .no-noun { font-style: italic; }
 
-#index tr.total td, #index tr.total_dynamic td { font-weight: bold; border-top: 1px solid #ccc; border-bottom: none; }
+#index tr.total td, #index tr.total_dynamic td { font-weight: bold; border-bottom: none; }
 
 #index tr.region:hover { background: #eee; }
 

coverage/function_index.html

@@ -4,14 +4,14 @@
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
     <title>Coverage for biobb_structure_utils/test/unitests/test_utils/test_cat_pdb.py: 100%</title>
     <link rel="icon" sizes="32x32" href="favicon_32_cb_58284776.png">
-    <link rel="stylesheet" href="style_cb_6b508a39.css" type="text/css">
-    <script src="coverage_html_cb_6fb7b396.js" defer></script>
+    <link rel="stylesheet" href="style_cb_a5a05ca4.css" type="text/css">
+    <script src="coverage_html_cb_bcae5fc4.js" defer></script>
 </head>
 <body class="pyfile">
 <header>
     <div class="content">
         <h1>
-            <span class="text">Coverage for </span><b>biobb_structure_utils/test/unitests/test_utils/test_cat_pdb.py</b>:
+            <span class="text">Coverage for </span><b>biobb_structure_utils&#8201;/&#8201;test&#8201;/&#8201;unitests&#8201;/&#8201;test_utils&#8201;/&#8201;test_cat_pdb.py</b>:
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         </h1>
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@@ -64,8 +64,8 @@ <h2>
             <a id="indexLink" class="nav" href="index.html">&Hat; index</a> &nbsp; &nbsp;
             <a id="nextFileLink" class="nav" href="z_604d40b87fe2aefd_test_closest_residues_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.10.4">coverage.py v7.10.4</a>,
-            created at 2025-12-16 14:56 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.13.0">coverage.py v7.13.0</a>,
+            created at 2025-12-16 14:59 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -105,8 +105,8 @@ <h2>
             <a class="nav" href="index.html">&Hat; index</a> &nbsp; &nbsp;
             <a class="nav" href="z_604d40b87fe2aefd_test_closest_residues_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.10.4">coverage.py v7.10.4</a>,
-            created at 2025-12-16 14:56 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.13.0">coverage.py v7.13.0</a>,
+            created at 2025-12-16 14:59 +0000
         </p>
     </div>
 </footer>

coverage/index.html

@@ -4,14 +4,14 @@
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
     <title>Coverage for biobb_structure_utils/test/unitests/test_utils/test_closest_residues.py: 100%</title>
     <link rel="icon" sizes="32x32" href="favicon_32_cb_58284776.png">
-    <link rel="stylesheet" href="style_cb_6b508a39.css" type="text/css">
-    <script src="coverage_html_cb_6fb7b396.js" defer></script>
+    <link rel="stylesheet" href="style_cb_a5a05ca4.css" type="text/css">
+    <script src="coverage_html_cb_bcae5fc4.js" defer></script>
 </head>
 <body class="pyfile">
 <header>
     <div class="content">
         <h1>
-            <span class="text">Coverage for </span><b>biobb_structure_utils/test/unitests/test_utils/test_closest_residues.py</b>:
+            <span class="text">Coverage for </span><b>biobb_structure_utils&#8201;/&#8201;test&#8201;/&#8201;unitests&#8201;/&#8201;test_utils&#8201;/&#8201;test_closest_residues.py</b>:
             <span class="pc_cov">100%</span>
         </h1>
         <aside id="help_panel_wrapper">
@@ -64,8 +64,8 @@ <h2>
             <a id="indexLink" class="nav" href="index.html">&Hat; index</a> &nbsp; &nbsp;
             <a id="nextFileLink" class="nav" href="z_604d40b87fe2aefd_test_extract_atoms_gro_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.10.4">coverage.py v7.10.4</a>,
-            created at 2025-12-16 14:56 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.13.0">coverage.py v7.13.0</a>,
+            created at 2025-12-16 14:59 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -105,8 +105,8 @@ <h2>
             <a class="nav" href="index.html">&Hat; index</a> &nbsp; &nbsp;
             <a class="nav" href="z_604d40b87fe2aefd_test_extract_atoms_gro_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.10.4">coverage.py v7.10.4</a>,
-            created at 2025-12-16 14:56 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.13.0">coverage.py v7.13.0</a>,
+            created at 2025-12-16 14:59 +0000
         </p>
     </div>
 </footer>

coverage/status.json

@@ -4,14 +4,14 @@
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
     <title>Coverage for biobb_structure_utils/test/unitests/test_utils/test_extract_atoms_gro.py: 100%</title>
     <link rel="icon" sizes="32x32" href="favicon_32_cb_58284776.png">
-    <link rel="stylesheet" href="style_cb_6b508a39.css" type="text/css">
-    <script src="coverage_html_cb_6fb7b396.js" defer></script>
+    <link rel="stylesheet" href="style_cb_a5a05ca4.css" type="text/css">
+    <script src="coverage_html_cb_bcae5fc4.js" defer></script>
 </head>
 <body class="pyfile">
 <header>
     <div class="content">
         <h1>
-            <span class="text">Coverage for </span><b>biobb_structure_utils/test/unitests/test_utils/test_extract_atoms_gro.py</b>:
+            <span class="text">Coverage for </span><b>biobb_structure_utils&#8201;/&#8201;test&#8201;/&#8201;unitests&#8201;/&#8201;test_utils&#8201;/&#8201;test_extract_atoms_gro.py</b>:
             <span class="pc_cov">100%</span>
         </h1>
         <aside id="help_panel_wrapper">
@@ -64,8 +64,8 @@ <h2>
             <a id="indexLink" class="nav" href="index.html">&Hat; index</a> &nbsp; &nbsp;
             <a id="nextFileLink" class="nav" href="z_604d40b87fe2aefd_test_extract_atoms_pdb_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.10.4">coverage.py v7.10.4</a>,
-            created at 2025-12-16 14:56 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.13.0">coverage.py v7.13.0</a>,
+            created at 2025-12-16 14:59 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -105,8 +105,8 @@ <h2>
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             <a class="nav" href="z_604d40b87fe2aefd_test_extract_atoms_pdb_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.10.4">coverage.py v7.10.4</a>,
-            created at 2025-12-16 14:56 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.13.0">coverage.py v7.13.0</a>,
+            created at 2025-12-16 14:59 +0000
         </p>
     </div>
 </footer>