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‎README.md‎

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[![](https://img.shields.io/conda/vn/bioconda/biobb_structure_utils?label=Conda)](https://anaconda.org/bioconda/biobb_structure_utils)
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[![](https://img.shields.io/conda/dn/bioconda/biobb_structure_utils?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_structure_utils)
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[![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_structure_utils?tab=tags)
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[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_structure_utils:5.2.0--pyhdfd78af_0)
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[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_structure_utils:5.2.1--pyhdfd78af_0)
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[![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_structure_utils)
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[![](https://img.shields.io/pypi/pyversions/biobb-structure-utils.svg?label=Python%20Versions)](https://pypi.org/project/biobb-structure-utils/)
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[latest API documentation](https://biobb-structure-utils.readthedocs.io/en/latest/).
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### Version
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v5.2.0 2025.2
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v5.2.1 2025.2
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### Installation
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* Installation:
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pip install "biobb_structure_utils>=5.2.0"
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pip install "biobb_structure_utils>=5.2.1"
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* Usage: [Python API documentation](https://biobb-structure-utils.readthedocs.io/en/latest/modules.html)
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* Installation:
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conda install -c bioconda "biobb_structure_utils>=5.2.0"
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conda install -c bioconda "biobb_structure_utils>=5.2.1"
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* Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-structure-utils.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-structure-utils.readthedocs.io/en/latest/command_line.html)
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* Installation:
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docker pull quay.io/biocontainers/biobb_structure_utils:5.2.0--pyhdfd78af_0
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docker pull quay.io/biocontainers/biobb_structure_utils:5.2.1--pyhdfd78af_0
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* Usage:
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docker run quay.io/biocontainers/biobb_structure_utils:5.2.0--pyhdfd78af_0 <command>
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docker run quay.io/biocontainers/biobb_structure_utils:5.2.1--pyhdfd78af_0 <command>
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Using SINGULARITY:
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* Installation:
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singularity pull --name biobb_structure_utils.sif https://depot.galaxyproject.org/singularity/biobb_structure_utils:5.2.0--pyhdfd78af_0
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singularity pull --name biobb_structure_utils.sif https://depot.galaxyproject.org/singularity/biobb_structure_utils:5.2.1--pyhdfd78af_0
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* Usage:
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### Copyright & Licensing
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This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU Horizon Europe [101093290](https://cordis.europa.eu/project/id/101093290), EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).
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* (c) 2015-2025 [Barcelona Supercomputing Center](https://www.bsc.es/)
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* (c) 2015-2025 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)
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* (c) 2015-2026 [Barcelona Supercomputing Center](https://www.bsc.es/)
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* (c) 2015-2026 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)
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Licensed under the
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[Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.

‎biobb_structure_utils/__init__.py‎

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name = "biobb_structure_utils"
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__all__ = ["utils"]
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__version__ = "5.2.0"
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__version__ = "5.2.1"

‎biobb_structure_utils/docs/source/change_log.md‎

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# Biobb Structure Utils changelog
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## What's new in version [5.2.1](https://github.com/bioexcel/biobb_amber/releases/tag/v5.2.1)?
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### Changes
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* [UPDATE] Update to biobb_common 5.2.2
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## What's new in version [5.2.0](https://github.com/bioexcel/biobb_amber/releases/tag/v5.2.0)?
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### Changes

‎biobb_structure_utils/docs/source/conf.py‎

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# General information about the project.
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project = "biobb_structure_utils"
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copyright = "2025, Bioexcel Project"
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copyright = "2026, Bioexcel Project"
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author = "Bioexcel Project"
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# The version info for the project you're documenting, acts as replacement for
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# |version| and |release|, also used in various other places throughout the
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# built documents.
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#
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# The short X.Y version.
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version = "5.2.0"
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version = "5.2.1"
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# The full version, including alpha/beta/rc tags.
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release = "5.2.0"
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release = "5.2.1"
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# The language for content autogenerated by Sphinx. Refer to documentation
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# for a list of supported languages.

‎biobb_structure_utils/docs/source/readme.md‎

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[![](https://img.shields.io/conda/vn/bioconda/biobb_structure_utils?label=Conda)](https://anaconda.org/bioconda/biobb_structure_utils)
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[![](https://img.shields.io/conda/dn/bioconda/biobb_structure_utils?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_structure_utils)
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[![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_structure_utils?tab=tags)
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[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_structure_utils:5.2.0--pyhdfd78af_0)
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[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_structure_utils:5.2.1--pyhdfd78af_0)
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[![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_structure_utils)
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[![](https://img.shields.io/pypi/pyversions/biobb-structure-utils.svg?label=Python%20Versions)](https://pypi.org/project/biobb-structure-utils/)
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[latest API documentation](https://biobb-structure-utils.readthedocs.io/en/latest/).
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### Version
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v5.2.0 2025.2
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v5.2.1 2025.2
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### Installation
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* Installation:
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pip install "biobb_structure_utils>=5.2.0"
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pip install "biobb_structure_utils>=5.2.1"
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* Usage: [Python API documentation](https://biobb-structure-utils.readthedocs.io/en/latest/modules.html)
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* Installation:
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conda install -c bioconda "biobb_structure_utils>=5.2.0"
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conda install -c bioconda "biobb_structure_utils>=5.2.1"
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* Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-structure-utils.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-structure-utils.readthedocs.io/en/latest/command_line.html)
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* Installation:
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docker pull quay.io/biocontainers/biobb_structure_utils:5.2.0--pyhdfd78af_0
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docker pull quay.io/biocontainers/biobb_structure_utils:5.2.1--pyhdfd78af_0
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* Usage:
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docker run quay.io/biocontainers/biobb_structure_utils:5.2.0--pyhdfd78af_0 <command>
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docker run quay.io/biocontainers/biobb_structure_utils:5.2.1--pyhdfd78af_0 <command>
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Using SINGULARITY:
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* Installation:
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singularity pull --name biobb_structure_utils.sif https://depot.galaxyproject.org/singularity/biobb_structure_utils:5.2.0--pyhdfd78af_0
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singularity pull --name biobb_structure_utils.sif https://depot.galaxyproject.org/singularity/biobb_structure_utils:5.2.1--pyhdfd78af_0
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* Usage:
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### Copyright & Licensing
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This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU Horizon Europe [101093290](https://cordis.europa.eu/project/id/101093290), EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).
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* (c) 2015-2025 [Barcelona Supercomputing Center](https://www.bsc.es/)
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* (c) 2015-2025 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)
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* (c) 2015-2026 [Barcelona Supercomputing Center](https://www.bsc.es/)
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* (c) 2015-2026 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)
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Licensed under the
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[Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.

‎biobb_structure_utils/docs/source/schema.html‎

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"applicationSubCategory": "http://www.edamontology.org/topic_3892",
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"citation": "https://www.nature.com/articles/s41597-019-0177-4",
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"license": "https://www.apache.org/licenses/LICENSE-2.0",
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"softwareVersion": "5.2.0",
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"softwareVersion": "5.2.1",
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"applicationSuite": "BioBB BioExcel Building Blocks",
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"codeRepository": "https://github.com/bioexcel/biobb_structure_utils",
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"isAccessibleForFree": "True",

‎biobb_structure_utils/json_schemas/biobb_structure_utils.json‎

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"github": "https://github.com/bioexcel/biobb_structure_utils",
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"readthedocs": "https://biobb-structure-utils.readthedocs.io/en/latest/",
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"conda": "https://anaconda.org/bioconda/biobb_structure_utils",
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"docker": "https://quay.io/biocontainers/biobb_structure_utils:5.2.0--pyhdfd78af_0",
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"singularity": "https://depot.galaxyproject.org/singularity/biobb_structure_utils:5.2.0--pyhdfd78af_0",
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"version": "5.2.0",
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"docker": "https://quay.io/biocontainers/biobb_structure_utils:5.2.1--pyhdfd78af_0",
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"singularity": "https://depot.galaxyproject.org/singularity/biobb_structure_utils:5.2.1--pyhdfd78af_0",
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"version": "5.2.1",
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"rest": true,
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"tools": [
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{
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}
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],
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"dep_pypi": [
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"install_requires=['biobb_common==5.2.0', 'biobb_structure_checking>=3.15.6']",
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"install_requires=['biobb_common==5.2.2', 'biobb_structure_checking>=3.15.6']",
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"python_requires='>=3.10'"
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],
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"biobb_common ==5.2.0",
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"biobb_common ==5.2.2",
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‎setup.py‎

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setuptools.setup(
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name="biobb_structure_utils",
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version="5.2.1",
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author="Biobb developers",
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author_email="pau.andrio@bsc.es",
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description="biobb_structure_utils is the Biobb module collection to perform basic manipulations on 3d structures.",
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},
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package_data={"biobb_structure_utils": ["py.typed"]},
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install_requires=["biobb_common==5.2.0", "biobb_structure_checking>=3.15.6"],
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install_requires=["biobb_common==5.2.2", "biobb_structure_checking>=3.15.6"],
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python_requires=">=3.10",
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entry_points={
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"console_scripts": [

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