Hello,
Thank you for developing the tool.
I tried MANIAC v1.0.0 with three families of lytic bacteriophages in fragment-based mode. When compared with VIRIDIC, the tool consistently appears to provide lower values. As estimated from the distance distributions, the difference is approximately 10%.
Could either tool be biased? As far as I can understand, the values matter.
The commands, the output, the MANIAC settings and the dataset are provided below.
snakemake --cores 32 --quiet --snakefile ~/MANIAC/MANIAC --configfile ./easy-fragment-based.txt
easy-fragment-based.txt
Bacteriophage genome accessions.txt
Hello,
Thank you for developing the tool.
I tried MANIAC v1.0.0 with three families of lytic bacteriophages in fragment-based mode. When compared with VIRIDIC, the tool consistently appears to provide lower values. As estimated from the distance distributions, the difference is approximately 10%.
Could either tool be biased? As far as I can understand, the values matter.
The commands, the output, the MANIAC settings and the dataset are provided below.
snakemake --cores 32 --quiet --snakefile ~/MANIAC/MANIAC --configfile ./easy-fragment-based.txteasy-fragment-based.txt
Bacteriophage genome accessions.txt