Course-on-scRNA-seq-data-analysis/course_schedule.qmd at master · bioinfocz/Course-on-scRNA-seq-data-analysis · GitHub

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---
title: "Course schedule"
---

::: {.callout-note}
**Apart** from the **starting time** the time schedule is **indicative**. Because we can not plan a course by the minute, in practice the time points will deviate.
:::

## Day 1

| block   	| start    	| end      	| subject                        	| lecturer                        |
|---------	|----------	|----------	|--------------------------------	|--------------------------------	|
| introduction 	| 9:15 AM  	| 9:30 AM 	| [Introduction](day1/day1-1_setup.qmd) | Michal Kolar|
| block 1 	| 9:30 AM  	| 10:30 AM 	| [Introduction scRNAseq](day1/day1-1_setup.qmd) | Michal Kolar |
|         	| 10:30 AM 	| 11:00 AM 	| BREAK                          	| |
| block 2 	| 11:00 AM 	| 12:30 PM 	| [10X and Cellranger](day1/day1-1a_cellranger.qmd) 	     | Jan Kubovciak |
|         	| 12:30 PM 	| 1:30 PM  	| BREAK                          	| |
| block 3 	| 1:30 PM  	| 3:00 PM  	| [Analysis tools and QC](day1/day1-2_analysis_tools_qc.qmd)             	 | Jan Kubovciak |
|         	| 3:00 PM  	| 3:30 PM  	| BREAK                          	| |
| block 4 	| 3:30 PM  	| 5:00 PM  	| Group work                | |

## Day 2

| block   	| start    	| end      	| subject                             	| lecturer                        |
|---------	|----------	|----------	|-------------------------------------	|--------------------------------	|
| block 1 	| 9:15 AM  	| 10:30 AM  	| [Normalization and scaling](day2/day2-1_normalization_scaling.qmd)  |  Lucie Pfeiferova |
|         	| 10:30 AM 	| 11:00 AM 	| BREAK                               	| |
| block 2 	| 11:00 AM 	| 12:30 PM 	| [Dimensionality reduction](day2/day2-2_dimensionality_reduction.qmd) and [Integration](day2/day2-3_integration.qmd)  | Lucie Pfeiferova and Yusuf Caglar Odabasi  |
|         	| 12:30 PM 	| 1:30 PM  	| BREAK                               	| |
| block 3 	| 1:30 PM  	| 3:00 PM  	| [Clustering](day2/day2-4_clustering.qmd)     	|  Yusuf Caglar Odabasi |
|         	| 3:00 PM  	| 3:30 PM  	| BREAK                               	| |
| block 4 	| 3:30 PM  	| 5:00 PM  	| group work 	| |

## Day 3

| block   	| start    	| end      	| subject                             	| lecturer                        |
|---------	|----------	|----------	|-------------------------------------	|--------------------------------	|
| block 1 	| 9:15 AM  	| 10:30 AM 	| [Cell annotation](day3/day3-1_cell_annotation.qmd) 	| Lucie Pfeiferova |
|         	| 10:30 AM 	| 11:00 AM 	| BREAK                               	| |
| block 2 	| 11:00 AM 	| 12:30 PM 	| [Differential gene expression](day3/day3-2_differential_gene_expression.qmd) and [Enrichment analysis](day3/day3-3_enrichment_analysis.qmd)            	| Jan Kubovciak |
|         	| 12:30 PM 	| 1:30 PM  	| BREAK                               	| |
| block 3 	| 1:30 PM  	| 3:00 PM  	| group work | |
|         	| 3:00 PM  	| 3:30 PM  	| BREAK                         |       	|
| block 4 	| 3:30 PM  	| 5:00 PM  	| group work 	+ presentations | |
| post-course 	| 5:00 PM  	| 5:10 PM  	| [Post-course information](assets/pdf/11_post_course.pdf) 	| Michal Kolar |