test_change

Author: pfeiferl

.github/workflows/docker-ci.yml

@@ -86,15 +86,14 @@ jobs:
       - name: Test image
         run: |
           docker exec -w /home/rstudio/scdrake_source scdrake_test \
-            r --interactive -L /usr/local/lib/R/site-library -t dev/run_tests.R --no-test-pipeline \
-            --output-dir /home/rstudio/scdrake_test_summary
+  Rscript dev/run_tests.R --no-test-pipeline --output-dir /home/rstudio/scdrake_test_summary
       - name: Copy test results
         if: always()
         run: |
           sudo docker cp scdrake_test:/home/rstudio/scdrake_test_summary /
       - name: Upload test results
         if: always()
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: scdrake_test_summary
           path: /scdrake_test_summary/

.local/share/rstudio/monitored/lists/file_mru

@@ -1,3 +1,4 @@
+~/.github/workflows/docker-ci.yml
 ~/DESCRIPTION
 ~/tests/testthat/test-run_pipeline.R
 ~/tests/testthat/setup.R
@@ -12,4 +13,3 @@
 ~/tests/testthat/run_pipeline_config_patches/single_sample_pbmc1k_full_sct/01_input_qc.default.yaml
 ~/tests/testthat/run_pipeline_config_patches/single_sample_pbmc1k_full/02_norm_clustering.default.yaml
 ~/tests/testthat/run_pipeline_config_patches/single_sample_pbmc1k_full/01_input_qc.default.yaml
-~/tests/testthat/run_pipeline_config_patches/single_sample_pbmc1k/01_input_qc.default.yaml

.local/share/rstudio/pcs/files-pane.pper

@@ -9,5 +9,5 @@
             "ascending": true
         }
     ],
-    "path": "~/tests/testthat"
+    "path": "~/.github/workflows"
 }

.local/share/rstudio/sources/prop/0B7A946C

@@ -1,6 +1,6 @@
 {
     "source_window_id": "",
     "Source": "Source",
-    "cursorPosition": "86,14",
-    "scrollLine": "82"
+    "cursorPosition": "88,92",
+    "scrollLine": "80"
 }

.local/share/rstudio/sources/session-9bbe3226/13EC6072

@@ -3,24 +3,24 @@
     "path": "~/.github/workflows/docker-ci.yml",
     "project_path": null,
     "type": "yaml",
-    "hash": "0",
+    "hash": "1319701172",
     "contents": "",
-    "dirty": true,
+    "dirty": false,
     "created": 1756140831036.0,
     "source_on_save": false,
     "relative_order": 6,
     "properties": {
         "source_window_id": "",
         "Source": "Source",
-        "cursorPosition": "86,14",
-        "scrollLine": "82"
+        "cursorPosition": "88,92",
+        "scrollLine": "80"
     },
     "folds": "",
-    "lastKnownWriteTime": 1756145161,
+    "lastKnownWriteTime": 1756146013,
     "encoding": "UTF-8",
     "collab_server": "",
     "source_window": "",
-    "last_content_update": 1756145718249,
+    "last_content_update": 1756146013608,
     "read_only": false,
     "read_only_alternatives": []
 }

.local/share/rstudio/sources/session-9bbe3226/13EC6072-contents

@@ -86,15 +86,14 @@ jobs:
       - name: Test image
         run: |
           docker exec -w /home/rstudio/scdrake_source scdrake_test \
-            r --interactive -L /usr/local/lib/R/site-library -t dev/run_tests.R --no-test-pipeline \
-            --output-dir /home/rstudio/scdrake_test_summary
+  Rscript dev/run_tests.R --no-test-pipeline --output-dir /home/rstudio/scdrake_test_summary
       - name: Copy test results
         if: always()
         run: |
           sudo docker cp scdrake_test:/home/rstudio/scdrake_test_summary /
       - name: Upload test results
         if: always()
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: scdrake_test_summary
           path: /scdrake_test_summary/