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vucinickvucinick
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Fix: Reporting correct gene number (#4)
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Lines changed: 2 additions & 2 deletions

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‎inst/Rmd/single_sample/01_input_qc_children/gene_filtering_custom.Rmd‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -11,7 +11,7 @@ janitor::tabyl(sce_custom_filter_rowSums == 0) %>%
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scdrake::render_bootstrap_table(full_width = FALSE, position = "left")
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```
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**Removing `r sum(!drake::readd(sce_qc_gene_filter, path = drake_cache_dir))` genes with UMI per cell less than
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**Removing `r sum(drake::readd(sce_qc_gene_filter, path = drake_cache_dir))` genes with UMI per cell less than
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`r cfg$MIN_UMI` and expressed in less than `r cfg$MIN_RATIO_CELLS * 100` % of all cells.**
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Info on custom filtered dataset:

‎inst/Rmd/single_sample/01_input_qc_children/gene_filtering_qc.Rmd‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -10,7 +10,7 @@ janitor::tabyl(sce_qc_filter_rowSums == 0) %>%
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scdrake::render_bootstrap_table(full_width = FALSE, position = "left")
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```
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**Removing `r sum(!drake::readd(sce_qc_gene_filter, path = drake_cache_dir))` genes with UMI per cell less than
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**Removing `r sum(drake::readd(sce_qc_gene_filter, path = drake_cache_dir))` genes with UMI per cell less than
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`r cfg$MIN_UMI` and expressed in less than `r cfg$MIN_RATIO_CELLS * 100` % of all cells.**
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Info on filtered dataset:

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