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Add manual curations
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‎src/biomappings/resources/negative.sssom.tsv‎

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@@ -52,6 +52,7 @@
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# schema: https://schema.org/
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# semapv: https://w3id.org/semapv/vocab/
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# skos: http://www.w3.org/2004/02/skos/core#
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# t4fs: http://purl.obolibrary.org/obo/T4FS_
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# uberon: http://purl.obolibrary.org/obo/UBERON_
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# umls: https://uts.nlm.nih.gov/uts/umls/concept/
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# uniprot.chain: http://purl.uniprot.org/annotation/
@@ -668,6 +669,7 @@ iconclass:94G42 Hector's body is weighed in gold (Aeschylus) skos:relatedMatch N
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ido:0000629 host role skos:exactMatch Not obi:0000725 host role semapv:ManualMappingCuration orcid:0000-0003-4423-4370 mira
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ido:0000636 sepsis skos:exactMatch Not ncbitaxon:137507 Sepsis semapv:ManualMappingCuration orcid:0000-0003-4423-4370 kestrel-mappings
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idomal:0000222 enzyme-linked immunosorbent assay skos:exactMatch Not maxo:0000610 clinical ELISA testing semapv:ManualMappingCuration orcid:0000-0003-4423-4370 mira
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idomal:0000822 antibody skos:exactMatch Not go:0042571 immunoglobulin complex, circulating semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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idomal:0001015 relapse skos:exactMatch Not ogms:0000105 relapse semapv:ManualMappingCuration orcid:0000-0003-4423-4370 mira
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idomal:0001019 mouse skos:exactMatch Not ncbitaxon:10090 Mus musculus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 mira
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idomal:0001083 Trap skos:exactMatch Not pr:000001937 tartrate-resistant acid phosphatase type 5 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 mira
@@ -804,6 +806,7 @@ mesh:C019963 cyclomaltodextrin glucanotransferase skos:exactMatch Not go:0043895
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mesh:C020622 hemoglobin B skos:exactMatch Not efo:0009213 Hemoglobin B Measurement semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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mesh:C020659 glutaminyl-tRNA synthetase skos:exactMatch Not go:0004819 glutamine-tRNA ligase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C020947 trophoblastin skos:exactMatch Not go:0004167 dopachrome isomerase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C021019 eIF-6 skos:exactMatch Not hgnc:6159 EIF6 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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mesh:C021380 L-2-hydroxyacid oxidase skos:exactMatch Not go:0003973 (S)-2-hydroxy-acid oxidase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C021464 3-keto-5-aminohexanoate cleavage enzyme skos:exactMatch Not go:0043720 3-keto-5-aminohexanoate cleavage activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C021928 2-oxoaldehyde dehydrogenase (NAD+) skos:exactMatch Not go:0047551 2-oxoaldehyde dehydrogenase (NAD+) activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
@@ -819,6 +822,7 @@ mesh:C029757 phosphogluconate dehydrogenase (decarboxylating) skos:exactMatch No
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mesh:C031570 2-hydroxybutyric acid skos:exactMatch Not efo:0010458 alpha-hydroxybutyric acid measurement semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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mesh:C031616 high density lipoprotein receptors skos:exactMatch Not go:0070506 high-density lipoprotein particle receptor activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C031729 3-chloro-D-alanine dehydrochlorinase skos:exactMatch Not go:0019149 3-chloro-D-alanine dehydrochlorinase activity semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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mesh:C031799 eIF-4B skos:exactMatch Not hgnc:3285 EIF4B semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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mesh:C034544 D-malate dehydrogenase (decarboxylating) skos:exactMatch Not go:0046553 D-malate dehydrogenase (decarboxylating) activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C035571 endodeoxyribonuclease VII skos:exactMatch Not go:0008855 exodeoxyribonuclease VII activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C036053 VLDL receptor skos:exactMatch Not go:0030229 very-low-density lipoprotein particle receptor activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
@@ -833,6 +837,7 @@ mesh:C055160 sphingomyelin phosphodiesterase D skos:exactMatch Not go:0050290 sp
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mesh:C055755 2'-(2-hydroxyphenyl)-2'-thiazoline-4'-carboxylic acid skos:exactMatch Not go:0120212 sperm head-tail coupling apparatus semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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mesh:C056957 1-(4-carbethoxyphenyl)-3-hydroxymethyl-3-methyltriazene skos:exactMatch Not go:0033802 isoliquiritigenin 2'-O-methyltransferase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C063522 NAD+ synthase (glutamine-hydrolysing) skos:exactMatch Not go:0003952 NAD+ synthase (glutamine-hydrolyzing) activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C064554 loricrin skos:exactMatch Not hgnc:6663 LORICRIN semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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mesh:C066234 enterobactin synthetase skos:exactMatch Not go:0009239 enterobactin biosynthetic process semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C068195 methylarginyl-lysyl-prolyl-tryptophyl-tert-leucyl-leucyl-ethyl ester skos:exactMatch Not efo:0002707 NT-1 semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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mesh:C071543 cytochrome P450 CYP3A10 (hamster) skos:exactMatch Not go:0033777 lithocholate 6beta-hydroxylase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
@@ -842,6 +847,7 @@ mesh:C078267 2,3-dihydroxy-4-cumate-3,4-dioxygenase skos:exactMatch Not go:00185
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mesh:C081975 protein kinase C eta skos:exactMatch Not go:0004697 protein kinase C activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C082662 phosphopantetheinyl transferase skos:exactMatch Not go:0008897 holo-[acyl-carrier-protein] synthase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C084023 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase skos:exactMatch Not go:0008704 5-carboxymethyl-2-hydroxymuconate delta-isomerase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C085344 SERPIN-B5 skos:exactMatch Not hgnc:8949 SERPINB5 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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mesh:C087831 triaosylceramide 1,4-galactosyltransferase skos:exactMatch Not go:0047275 glucosaminylgalactosylglucosylceramide beta-galactosyltransferase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C092119 Hoxa10 protein, mouse skos:exactMatch Not ncit:C26309 Homeobox Protein Hox-A10 semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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mesh:C092274 melanin-concentrating hormone receptor skos:exactMatch Not go:0030273 melanin-concentrating hormone receptor activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
@@ -855,14 +861,19 @@ mesh:C110804 mycophenolic adenine dinucleotide skos:exactMatch Not go:0072671 mi
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mesh:C115412 cytochrome P-450 CYP81E1 (Glycyrrhiza echinata) skos:exactMatch Not go:0033773 isoflavone 2'-hydroxylase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C116435 lipoic acid synthase skos:exactMatch Not go:0016992 lipoate synthase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C120640 DNA ligase (NAD) skos:exactMatch Not go:0003911 DNA ligase (NAD+) activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C407343 septin 3 skos:exactMatch Not hgnc:10750 SEPTIN3 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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mesh:C415368 interleukin-22 skos:exactMatch Not efo:0003810 interleukin-22 (Homo sapiens) semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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mesh:C415369 interleukin-22 receptor skos:exactMatch Not go:0042018 interleukin-22 receptor activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C416670 N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase skos:exactMatch Not go:0050659 N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C419642 NRH - quinone oxidoreductase2 skos:exactMatch Not go:0001512 dihydronicotinamide riboside quinone reductase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C422042 interleukin 20 skos:exactMatch Not efo:0003803 interleukin-20 (Homo sapiens) semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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mesh:C422952 telomerase RNA skos:exactMatch Not go:0000332 template for synthesis of G-rich strand of telomere DNA activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C425287 sharpin skos:exactMatch Not hgnc:25321 SHARPIN semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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mesh:C425967 eIF-5A2 skos:exactMatch Not hgnc:3301 EIF5A2 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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mesh:C427385 4-hydroxyacetophenone monooxygenase skos:exactMatch Not go:0033767 4-hydroxyacetophenone monooxygenase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C427545 RELT skos:exactMatch Not hgnc:13764 RELT semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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mesh:C428384 MLK-like mitogen-activated protein triple kinase skos:exactMatch Not go:0004709 MAP kinase kinase kinase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C429463 NUDT9 skos:exactMatch Not hgnc:8056 NUDT9 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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mesh:C434124 Palmd protein, mouse skos:exactMatch Not ncit:C105939 Palmdelphin semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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mesh:C445314 malonyl-CoA anthocyanin 5-O-glucoside-6'''-O-malonyltransferase skos:exactMatch Not go:0033810 anthocyanin 5-O-glucoside 6'''-O-malonyltransferase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C449880 O-GlcNAc transferase skos:exactMatch Not go:0097363 protein O-GlcNAc transferase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
@@ -886,6 +897,7 @@ mesh:C537519 Schwartz-Lelek syndrome skos:exactMatch Not doid:0080033 craniometa
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mesh:C537996 Dysgnathia complex skos:exactMatch Not doid:0060341 agnathia-otocephaly complex semapv:ManualMappingCuration orcid:0000-0003-1307-2508
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mesh:C538618 Donath-Landsteiner hemolytic anemia skos:exactMatch Not doid:10507 Dressler's syndrome semapv:ManualMappingCuration orcid:0000-0003-1307-2508
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mesh:C548841 Parasitic infection caused by Dracunculus medinensis skos:exactMatch Not go:0050521 alpha-glucan, water dikinase activity semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:C549824 Mid1ip1 skos:exactMatch Not hgnc:20715 MID1IP1 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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mesh:C562584 Xanthinuria, Type I skos:exactMatch Not doid:0060236 xanthinuria semapv:ManualMappingCuration orcid:0000-0003-1307-2508
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mesh:C562601 Lactose Intolerance, Adult Type skos:exactMatch Not doid:10604 lactose intolerance semapv:ManualMappingCuration orcid:0000-0003-1307-2508
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mesh:C562680 Cystathionase Deficiency skos:exactMatch Not doid:0090142 cystathioninuria semapv:ManualMappingCuration orcid:0000-0003-1307-2508
@@ -899,6 +911,7 @@ mesh:C567484 Mental Retardation, X-Linked, Syndromic, Christianson Type skos:exa
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mesh:C567738 Neuropathy, Hereditary Sensory And Autonomic, Type IIB skos:exactMatch Not doid:0070150 hereditary sensory and autonomic neuropathy type 2B semapv:ManualMappingCuration orcid:0000-0003-1307-2508
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mesh:C579934 Autosomal Recessive Cerebellar Ataxia Type 1 skos:exactMatch Not doid:0111618 autosomal recessive spinocerebellar ataxia 8 semapv:ManualMappingCuration orcid:0000-0003-1307-2508
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mesh:C580473 Succinate-Coa Ligase Deficiency skos:exactMatch Not doid:0080124 mitochondrial DNA depletion syndrome 5 semapv:ManualMappingCuration orcid:0000-0003-1307-2508
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mesh:C582471 Itgb1bp2 skos:exactMatch Not hgnc:6154 ITGB1BP2 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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mesh:C584135 endotrophin skos:exactMatch Not ncit:C165979 Pro-C6 Measurement semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:D000068256 Darbepoetin alfa skos:exactMatch Not hgnc:4392 GNAS semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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mesh:D000068437 Pemetrexed skos:exactMatch Not chebi:17509 5'-S-methyl-5'-thioadenosine semapv:ManualMappingCuration orcid:0000-0003-4423-4370
@@ -1069,6 +1082,7 @@ mesh:D020182 Sleep Apnea, Central skos:exactMatch Not doid:0060731 congenital ce
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mesh:D020386 Isaacs Syndrome skos:exactMatch Not doid:963 episodic ataxia semapv:ManualMappingCuration orcid:0000-0003-1307-2508
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mesh:D020425 Radial Neuropathy skos:exactMatch Not doid:12170 radial nerve lesion semapv:ManualMappingCuration orcid:0000-0003-1307-2508
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mesh:D020521 Stroke skos:exactMatch Not hp:0002140 Ischemic stroke semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:D020666 ras-GRF1 skos:exactMatch Not hgnc:9875 RASGRF1 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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mesh:D020747 Calcium Channels, T-Type skos:exactMatch Not go:0008332 low voltage-gated calcium channel activity semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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mesh:D020751 Alcohol-Induced Disorders skos:exactMatch Not doid:0050741 alcohol dependence semapv:ManualMappingCuration orcid:0000-0003-1307-2508
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mesh:D020821 Dystonic Disorders skos:exactMatch Not doid:0090056 dystonia 12 semapv:ManualMappingCuration orcid:0000-0003-1307-2508
@@ -1119,6 +1133,7 @@ mesh:D054818 Hexosaminidase A skos:exactMatch Not go:0004563 beta-N-acetylhexosa
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mesh:D055607 Receptors, Natural Killer Cell skos:exactMatch Not hgnc:6378 KLRD1 semapv:ManualMappingCuration orcid:0000-0001-9439-5346 https://github.com/biomappings/biomappings/blob/5c44c0/scripts/import_gilda_mappings.py
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mesh:D055752 Small Cell Lung Carcinoma skos:exactMatch Not doid:5411 lung oat cell carcinoma semapv:ManualMappingCuration orcid:0000-0003-1307-2508
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mesh:D057135 Wet Macular Degeneration skos:exactMatch Not doid:10873 Kuhnt-Junius degeneration semapv:ManualMappingCuration orcid:0000-0003-1307-2508
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mesh:D058258 Serpin E2 skos:exactMatch Not hgnc:8951 SERPINE2 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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mesh:D058494 Walker-Warburg Syndrome skos:exactMatch Not doid:0111237 congenital muscular dystrophy-dystroglycanopathy type A1 semapv:ManualMappingCuration orcid:0000-0003-1307-2508
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mesh:D058570 TOR Serine-Threonine Kinases skos:exactMatch Not hgnc:3942 MTOR semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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mesh:D063807 Dandruff skos:exactMatch Not doid:8941 seborrheic infantile dermatitis semapv:ManualMappingCuration orcid:0000-0001-9439-5346
@@ -1672,6 +1687,7 @@ reactome:R-XTR-8877627 Vitamin E skos:exactMatch Not chebi:46430 (-)-alpha-tocop
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reactome:R-XTR-8877627 Vitamin E skos:exactMatch Not mesh:D014810 Vitamin E semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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reactome:R-XTR-9664873 Pexophagy debio:0000003 Not go:0030242 autophagy of peroxisome semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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reactome:R-XTR-983189 Kinesins debio:0000003 Not fplx:Kinesin Kinesin semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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schema:dataset dataset skos:exactMatch Not t4fs:0000347 dataset semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12
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uberon:0000104 life cycle skos:exactMatch Not mesh:D008018 Life Cycle Stages semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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uberon:0000353 parenchyma skos:exactMatch Not bto:0000999 plant parenchyma semapv:ManualMappingCuration orcid:0000-0003-4423-4370 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py
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uberon:0001263 pancreatic acinus skos:exactMatch Not bto:0000028 pancreatic acinar cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py

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