From 5d950fa02be1f432e87676cb55bc9bb8d14fb3a3 Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Wed, 6 May 2026 20:27:34 +0200 Subject: [PATCH] Add example taxrank curations to UMLS, NCIT, and SNOMED-CT --- src/biomappings/resources/positive.sssom.tsv | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/src/biomappings/resources/positive.sssom.tsv b/src/biomappings/resources/positive.sssom.tsv index 15316669..7b30446d 100644 --- a/src/biomappings/resources/positive.sssom.tsv +++ b/src/biomappings/resources/positive.sssom.tsv @@ -68,6 +68,7 @@ # schema: https://schema.org/ # semapv: https://w3id.org/semapv/vocab/ # skos: http://www.w3.org/2004/02/skos/core# +# snomedct: http://snomed.info/id/ # stato: http://purl.obolibrary.org/obo/STATO_ # t4fs: http://purl.obolibrary.org/obo/T4FS_ # taxrank: http://purl.obolibrary.org/obo/TAXRANK_ @@ -10724,7 +10725,10 @@ reactome:R-SSC-73843 5-Phosphoribose 1-diphosphate biosynthesis debio:0000003 go reactome:R-XTR-73843 5-Phosphoribose 1-diphosphate biosynthesis debio:0000003 go:0006015 5-phosphoribose 1-diphosphate biosynthetic process semapv:ManualMappingCuration orcid:0000-0003-4423-4370 schema:Book Book skos:exactMatch t4fs:0000305 book semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12 schema:Dataset Dataset skos:exactMatch t4fs:0000347 dataset semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-04-12 +taxrank:0000001 phylum skos:exactMatch ncit:C45277 Phylum semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-05-06 +taxrank:0000001 phylum skos:exactMatch snomedct:31891000009101 Phylum semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-05-06 taxrank:0000001 phylum skos:exactMatch tdwg.taxonrank:Phylum Phylum semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-05-02 +taxrank:0000001 phylum skos:exactMatch umls:C1709533 Phylum (taxon) semapv:ManualMappingCuration orcid:0000-0003-4423-4370 2026-05-06 tdwg.taxonrank:Phylum Phylum skos:exactMatch taxrank:0000001 phylum semapv:MappingInversion orcid:0000-0003-4423-4370 2026-05-02 uberon:0000017 exocrine pancreas skos:exactMatch mesh:D046790 Pancreas, Exocrine semapv:ManualMappingCuration orcid:0000-0001-9439-5346 uberon:0000076 external ectoderm skos:exactMatch bto:0006242 external ectoderm semapv:ManualMappingCuration orcid:0000-0003-4423-4370 generate_uberon_bto_mappings.py