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StroemPhicthoyt
andauthored
Fix OWL downloads for FIX and REX (#1867)
This PR adds download links to the latest working snapshots of REX and FIX in the web.archive, because the OBO PURLs do not resolve anymore, due to the Berkley serves that hosted them having been shut down (see also: EBISPOT/ols4#1102 (comment)). --------- Co-authored-by: Charles Tapley Hoyt <cthoyt@gmail.com>
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src/bioregistry/data/bioregistry.json

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"orcid": "0000-0001-8123-5351"
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},
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"contact_group_email": "chebi-help@ebi.ac.uk",
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"contributor_extras": [
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{
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"email": "philip.stroemert@tib.eu",
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"github": "StroemPhi",
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"name": "Philip Strömert",
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"orcid": "0000-0002-1595-3213"
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}
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],
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"download_owl": "https://web.archive.org/web/20251107150330/http://ontologies.berkeleybop.org/fix.owl",
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"example": "0000390",
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"fairsharing": {
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"description": "FIX consists of two ontologies: methods and properties (but not objects, which are subject of the chemical ontology). The methods are applied to study the properties. While this ontology is available via BioPortal and the OBO Foundry, we cannot find a home page or a publication for the resource, and the resource itself is no longer maintained.",
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"orcid": "0000-0001-8123-5351"
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},
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"contact_group_email": "chebi-help@ebi.ac.uk",
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"download_owl": "http://purl.obolibrary.org/obo/rex.owl",
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"contributor_extras": [
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{
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"email": "philip.stroemert@tib.eu",
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"github": "StroemPhi",
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"name": "Philip Strömert",
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"orcid": "0000-0002-1595-3213"
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}
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],
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"download_owl": "https://web.archive.org/web/20250616081915/http://ontologies.berkeleybop.org/rex.owl",
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"example": "0000512",
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"fairsharing": {
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"description": "REX is an ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time. REX includes both microscopic processes (involving molecular entities or subatomic particles) and macroscopic processes. Some biochemical processes from Gene Ontology (GO Biological process) can be described as instances of REX.",

src/bioregistry/data/curated_papers.tsv

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41087926 1 0009-0009-3402-8013 2025-12-21 new_prefix 1796 Publication for pahg
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41099621 1 0009-0009-3402-8013 2025-12-26 new_prefix 1799 Publication for pmads
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41118507 1 0009-0009-3402-8013 2025-12-24 new_prefix 1798 Publication for ribocirc v2.0
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41525503 1 0009-0004-3248-9223 2026-03-18 new_prefix 1858 Publication for hemolytik
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41525503 1 0009-0004-3248-9223 2026-03-18 new_prefix 1858 Publication for hemolytik

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