Implement CellList in Rust
#1158
padix-keytest_and_deploy.yml
on: pull_request
Build CCD and wheel for reusing it in several CI jobs
12m 4s
Check code style
18s
Generate wheels matrix
15s
Build source distribution
33s
Test interfaces to databases and applications
3m 41s
Test interface to Muscle 5
1m 3s
Build documentation
4m 43s
Matrix: Build & Test
Upload documentation to GitHub Releases and documentation website
Upload package to GitHub Releases & PyPI
Annotations
36 errors and 13 warnings
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Check code style
Process completed with exit code 1.
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Test interfaces to databases and applications
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Run benchmarks
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Run benchmarks
Error: failed to execute the benchmark process, exit code: 1
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Build & Test (cp312-macosx_arm64, macos-latest)
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Build & Test (cp312-macosx_arm64, macos-latest)
cibuildwheel: Command ['/bin/sh', '-c', 'pytest /Users/runner/work/biotite/biotite --durations=50 --ignore=/Users/runner/work/biotite/biotite//tests//sequence//align//test_statistics.py --ignore=/Users/runner/work/biotite/biotite//tests//application --ignore=/Users/runner/work/biotite/biotite//tests//interface --ignore=/Users/runner/work/biotite/biotite//tests//database --ignore=/Users/runner/work/biotite/biotite//tests//test_doctest.py --ignore=/Users/runner/work/biotite/biotite//tests//test_modname.py\n'] failed with code 1.
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Build & Test (cp311-win_amd64, windows-latest)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp311-win_amd64, windows-latest)
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Build & Test (cp312-win_amd64, windows-latest)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp312-win_amd64, windows-latest)
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Build & Test (cp313-win_amd64, windows-latest)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp313-win_amd64, windows-latest)
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Build & Test (cp311-manylinux_x86_64, ubuntu-latest)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp311-manylinux_x86_64, ubuntu-latest)
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Build & Test (cp313-manylinux_x86_64, ubuntu-latest)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp313-manylinux_x86_64, ubuntu-latest)
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Build & Test (cp314-win_amd64, windows-latest)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp314-win_amd64, windows-latest)
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Build & Test (cp312-manylinux_x86_64, ubuntu-latest)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp312-manylinux_x86_64, ubuntu-latest)
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Build & Test (cp313-manylinux_aarch64, ubuntu-24.04-arm)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp313-manylinux_aarch64, ubuntu-24.04-arm)
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Build & Test (cp314-manylinux_x86_64, ubuntu-latest)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp314-manylinux_x86_64, ubuntu-latest)
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Build & Test (cp314-manylinux_aarch64, ubuntu-24.04-arm)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp314-manylinux_aarch64, ubuntu-24.04-arm)
The operation was canceled.
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Build & Test (cp312-manylinux_aarch64, ubuntu-24.04-arm)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp312-manylinux_aarch64, ubuntu-24.04-arm)
The operation was canceled.
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Build & Test (cp311-manylinux_aarch64, ubuntu-24.04-arm)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp311-manylinux_aarch64, ubuntu-24.04-arm)
The operation was canceled.
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Build & Test (cp311-macosx_arm64, macos-latest)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp311-macosx_arm64, macos-latest)
The operation was canceled.
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Build & Test (cp314-macosx_arm64, macos-latest)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp314-macosx_arm64, macos-latest)
The operation was canceled.
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Build & Test (cp313-macosx_arm64, macos-latest)
The strategy configuration was canceled because "test-and-build.cp312-macosx_arm64_macos-" failed
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Build & Test (cp313-macosx_arm64, macos-latest)
The operation was canceled.
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Check code style
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Check code style
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Check code style
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Check code style
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Test interface to Muscle 5
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Test interfaces to databases and applications
warning libmamba You are using 'pip' as an additional package manager.
Be aware that packages installed with 'pip' are managed independently from 'conda-forge' channel.
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Test interfaces to databases and applications
warning libmamba [dssp-4.5.7-py312h233929b_1] The following files were already present in the environment:
- share/libcifpp/components.cif
- share/libcifpp/mmcif_ddl.dic
- share/libcifpp/mmcif_ma.dic
- share/libcifpp/mmcif_pdbx.dic
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Test interfaces to databases and applications
warning libmamba [ossuuid-1.6.2-h5888daf_1001] The following files were already present in the environment:
- lib/libuuid.a
- lib/libuuid.so
- lib/pkgconfig/uuid.pc
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Test interfaces to databases and applications
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Build documentation
warning libmamba You are using 'pip' as an additional package manager.
Be aware that packages installed with 'pip' are managed independently from 'conda-forge' channel.
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Build documentation
warning libmamba [dssp-4.5.7-py312h233929b_1] The following files were already present in the environment:
- share/libcifpp/components.cif
- share/libcifpp/mmcif_ddl.dic
- share/libcifpp/mmcif_ma.dic
- share/libcifpp/mmcif_pdbx.dic
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Build documentation
warning libmamba [ossuuid-1.6.2-h5888daf_1001] The following files were already present in the environment:
- lib/libuuid.a
- lib/libuuid.so
- lib/pkgconfig/uuid.pc
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Build documentation
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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ccd
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36.3 MB |
sha256:5a64192099b94ef5229b47af7960945d439f121ecda523180124851ae59be998
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documentation
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74.1 MB |
sha256:4d8432a3eafe791c9194889db376a7629de3960bde71bad9a8da74bfc63b37d2
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internal-build
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60.5 MB |
sha256:d8b3731cee76c79fcf146c71f461d9daa101a6f4c166ce923fddf1a559a0bb20
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release-sdist
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36.9 MB |
sha256:60a38dfdbfab5aa2c02230635a9e66a3be81a0297fd171d9335cb8e9c32283d1
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