Running Within a Computer Node

[josephliccini]

I originally was running my Java Application with the use of the pbs-java-api within the Head and Test nodes, which have access to the 'qsub' command, but due to instability within those nodes, I want to actually send my Java program in a extended walltime job to the cluster.

However, the 'qsub' command is not available to computer nodes, therefore the pbs-java-api PBS.qsub(String input) fails.

In scripts that I need to do this, I do

ssh testnode qsub script.sh

Any idea how to mirror that in the API?

I am having some trouble, and can't seem to figure it out...

Thanks!

[kinow]

I have an idea, but it will take a few days to roll a release with this fix (doing some deploy at $work atm).

You can take a look at the prototype pbs drmaa in biouno org. There I used overthere. We can do the same in pbs java api :-D

[josephliccini]

Will do!

I have an idea too I'll let you know if I have any luck!

[kinow]

Link to the repository with some working code. Will cut another release of drmaa-pbs and will test it with a PBS Torque docker container.

https://github.com/biouno/drmaa-pbs/tree/master/src/main/java/org/biouno/drmaa_pbs

In case that works, I'll check whether we should maintain these two repositories or maybe merge them.