Merge branch 'fix_bke_taxonomy_model_20250924' of https://github.com/puja-trivedi/models into fix_bke_taxonomy_model_20250924

Author: puja-trivedi

erdiagram-autogen/bke_taxonomy.md

@@ -2,8 +2,8 @@
 erDiagram
 DisplayColor {
     string id  
-    string color_hex_triplet  
     uriorcurieList xref  
+    string color_hex_triplet  
     iri_type iri  
     uriorcurieList category  
     stringList type  
@@ -49,10 +49,10 @@ MatrixFile {
 }
 Abbreviation {
     string id  
+    uriorcurieList xref  
     string term  
     string meaning  
     string entity_type  
-    uriorcurieList xref  
     iri_type iri  
     uriorcurieList category  
     stringList type  
@@ -77,8 +77,8 @@ CellSpecimen {
     label_typeList synonym  
 }
 ObservationRow {
-    string label  
     uriorcurieList xref  
+    string label  
     string id  
     iri_type iri  
     uriorcurieList category  
@@ -121,8 +121,8 @@ Cluster {
     string id  
     string accession_id  
     string name  
-    integer number_of_observations  
     uriorcurieList xref  
+    integer number_of_observations  
     iri_type iri  
     uriorcurieList category  
     stringList type  
@@ -166,8 +166,8 @@ CellTypeTaxon {
     string name  
     integer order  
     string description  
-    integer number_of_cells  
     uriorcurieList xref  
+    integer number_of_cells  
     iri_type iri  
     uriorcurieList category  
     stringList type  
@@ -181,9 +181,9 @@ CellTypeSet {
     string accession_id  
     string name  
     string description  
-    string cell_type_set_type  
     integer order  
     uriorcurieList xref  
+    string cell_type_set_type  
     iri_type iri  
     uriorcurieList category  
     stringList type  

jsonld-context-autogen/bke_taxonomy.context.jsonld

@@ -198,6 +198,15 @@
          "@type": "@id",
          "@id": "denotes_parcellation_term"
       },
+      "entity_type": {
+         "@id": "entity_type"
+      },
+      "meaning": {
+         "@id": "meaning"
+      },
+      "term": {
+         "@id": "term"
+      },
       "id": "@id",
       "accession_id": {
          "@id": "accession_id"
@@ -245,6 +254,10 @@
          "@type": "@id",
          "@id": "contains_cluster"
       },
+      "number_of_cells": {
+         "@type": "xsd:integer",
+         "@id": "number_of_cells"
+      },
       "checksum_algorithm": {
          "@context": {
             "text": "skos:notation",
@@ -264,13 +277,14 @@
          "@type": "@id",
          "@id": "contains_sample"
       },
+      "number_of_observations": {
+         "@type": "xsd:integer",
+         "@id": "number_of_observations"
+      },
       "part_of_set": {
          "@type": "@id",
          "@id": "part_of_set"
       },
-      "color_hex_triplet": {
-         "@id": "color_hex_triplet"
-      },
       "is_palette_for": {
          "@type": "@id",
          "@id": "is_palette_for"
@@ -279,6 +293,7 @@
          "@id": "schema:url"
       },
       "created_at": {
+         "@type": "xsd:dateTime",
          "@id": "created_at"
       },
       "creation_date": {
@@ -296,6 +311,9 @@
          "@type": "@id",
          "@id": "digest"
       },
+      "color_hex_triplet": {
+         "@id": "color_hex_triplet"
+      },
       "is_color_for_set": {
          "@type": "@id",
          "@id": "is_color_for_set"
@@ -308,9 +326,6 @@
          "@type": "@id",
          "@id": "part_of_palette"
       },
-      "entity_type": {
-         "@id": "entity_type"
-      },
       "format": {
          "@id": "biolink:format"
       },
@@ -435,15 +450,9 @@
          "@type": "@id",
          "@id": "is_revision_of"
       },
-      "label": {
-         "@id": "label"
-      },
       "license": {
          "@id": "biolink:license"
       },
-      "meaning": {
-         "@id": "meaning"
-      },
       "molecular_type": {
          "@id": "molecular_type"
       },
@@ -453,12 +462,6 @@
       "node_property": {
          "@id": "biolink:node_property"
       },
-      "number_of_cells": {
-         "@id": "number_of_cells"
-      },
-      "number_of_observations": {
-         "@id": "number_of_observations"
-      },
       "has_variable": {
          "@type": "@id",
          "@id": "has_variable"
@@ -467,6 +470,9 @@
          "@type": "@id",
          "@id": "represented_by"
       },
+      "label": {
+         "@id": "label"
+      },
       "part_of_matrix": {
          "@type": "@id",
          "@id": "part_of_matrix"
@@ -476,6 +482,7 @@
          "@id": "represented_in"
       },
       "order": {
+         "@type": "xsd:integer",
          "@id": "order"
       },
       "ordinal": {
@@ -578,9 +585,6 @@
       "synonym": {
          "@id": "biolink:synonym"
       },
-      "term": {
-         "@id": "term"
-      },
       "type": {
          "@id": "rdf:type"
       },