added 'ValueSets' tab and Enum definitions for Abbreviation.entity_type and CellTypeSet.cell_type_set_type

Author: puja-trivedi

linkml-schema/bke_taxonomy.yaml

@@ -15,6 +15,23 @@ prefixes:
   linkml: https://w3id.org/linkml/
 default_prefix: bican
 default_range: string
+enums:
+  abbreviation_entity_type:
+    from_schema: https://w3id.org/brain-bican/bke-taxonomy
+    permissible_values:
+      cell type:
+        description: Abbreviation denotes a Cell Type entity.
+      gene:
+        description: Abbreviation denotes a Gene entity.
+      structure:
+        description: Abbreviation denotes a Structure entity.
+  cell_type_set_type:
+    from_schema: https://w3id.org/brain-bican/bke-taxonomy
+    permissible_values:
+      taxonomic level:
+        description: Denotes CellTypeSet is at Taxonomic level.
+      neighborhood:
+        description: Denotes CellTypeSet is at Neighborhood level.
 slots:
   part_of_taxonomy:
     from_schema: https://w3id.org/brain-bican/bke-taxonomy
@@ -207,7 +224,7 @@ classes:
         examples:
         - value: taxonomic_level
         from_schema: https://w3id.org/brain-bican/bke-taxonomy
-        range: string
+        range: cell_type_set_type
   CellTypeTaxon:
     description: A cell type taxon is a node in a taxonomy. Taxons represents a unit
       of cell type classification and is defined by a set of clusters. Taxons may
@@ -587,7 +604,7 @@ classes:
         examples:
         - value: cell type
         from_schema: https://w3id.org/brain-bican/bke-taxonomy
-        range: string
+        range: abbreviation_entity_type
   MatrixFile:
     description: A digital file containing the representation of full or partial data
       matrix.

linkml-schema/source_bke_taxonomy/gsheet.yaml

@@ -6,6 +6,8 @@ sheets:
     gid: "118188371"
   - name: "Slots"
     gid: "1569691331"
+  - name: "ValueSets"
+    gid: "475836633"
   - name: "Prefixes"
     gid: "2120932954"
   - name: "Schema"

linkml-schema/source_bke_taxonomy/gsheet_output/Slots.tsv

@@ -6,13 +6,13 @@ LinkML Class Name	LinkML Slot	Attribute Name	Data Type	Definition	from_schema	BK
 Abbreviation	id		string	( database GUID)	bican_biolink					FALSE	
 Abbreviation		term	string	An abbreviation term.				IT		FALSE	
 Abbreviation		meaning	string	The meaning of an abbreviation term.				intratelencephalic-projecting glutamatergic cortical neuron		FALSE	
-Abbreviation		entity_type	string	The entity type which the abbreviation term denotes.				cell type		FALSE	cell type, gene, structure
+Abbreviation		entity_type	abbreviation_entity_type	The entity type which the abbreviation term denotes.				cell type		FALSE	cell type, gene, structure
 Abbreviation	xref				bican_biolink	unique_id	allen				
 CellTypeSet	id		string	( database GUID)	bican_biolink					FALSE	
 CellTypeSet	accession_id		string	A provider assigned accession identifier for the cell type set.				CCN20230722_CLAS		FALSE	
 CellTypeSet	name		string	Name of the cell type set taxonomy.	bican_biolink			class		FALSE	
 CellTypeSet	description		string	Description of the cell type set.	bican_biolink			The top level of cell type definition in the mouse whole brain taxonomy. It is primarily determined by broad brain region and neurotransmitter type. All cells within a subclass belong to the same class. Class provides a broader categorization of cell types.		FALSE	
-CellTypeSet		cell_type_set_type	string	A tag denoting the type or purpose of the cell type set.		type	allen	taxonomic_level		FALSE	taxonomic level, neighborhood
+CellTypeSet		cell_type_set_type	cell_type_set_type	A tag denoting the type or purpose of the cell type set.		type	allen	taxonomic_level		FALSE	taxonomic level, neighborhood
 CellTypeSet	order		integer	The priority or display order of the cell type set among all other sets of the same type.		order_idx	allen	1	0	TRUE	
 CellTypeSet	xref				bican_biolink	unique_id	allen				
 CellTypeTaxon	id		string	( database GUID)	bican_biolink					FALSE	

linkml-schema/source_bke_taxonomy/gsheet_output/ValueSets.tsv

@@ -0,0 +1,7 @@
+variable_name	value	description
+> enum	permissible_value	description
+abbreviation_entity_type	cell type	Abbreviation denotes a Cell Type entity.
+abbreviation_entity_type	gene	Abbreviation denotes a Gene entity.
+abbreviation_entity_type	structure	Abbreviation denotes a Structure entity.
+cell_type_set_type	taxonomic level	Denotes CellTypeSet is at Taxonomic level.
+cell_type_set_type	neighborhood	Denotes CellTypeSet is at Neighborhood level.