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Merge pull request #130 from brain-bican/autogenerated-yaml-20241220000418
Auto PR: assertion_evidence.yaml generated from google spreadsheets using schemasheets
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‎erdiagram-autogen/assertion_evidence.md‎

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```mermaid
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erDiagram
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Activity {
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datetime ended_at_time
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datetime started_at_time
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}
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Agent {
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}
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Annotation {
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}
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Assertion {
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Categories has_assertion_category
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string has_assertion_text
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string has_assertion_description
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string has_assertion_summary
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}
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CellAnnotation {
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}
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Document {
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uri identifier
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}
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EvidenceItem {
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}
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Activity {
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datetime ended_at_time
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datetime started_at_time
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EvidenceLine {
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EvidenceDirection evidence_direction
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EvidenceStrength evidence_line_strength
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Categories has_evidence_category
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string has_evidenceline_description
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}
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Agent {
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Group {
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}
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AssertionSummary {
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string has_assertion_summary
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Identifier {
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}
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EvidenceSummary {
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string has_evidence_summary
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OrcidIdentifier {
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}
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AssertionMethod {
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Organization {
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}
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DataAnnotation {
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Person {
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}
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Evidence {
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Categories has_evidence_category
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string has_evidence_text
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PersonIdentifier {
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}
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SoftwareAgent {
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}
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Assertion ||--|o AssertionMethod : "has_assertion_method"
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Assertion ||--|o AssertionSummary : "is_associated_with"
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Assertion ||--|o DataAnnotation : "has_data_annotation"
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Agent ||--|o Activity : "is_associated_with"
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Evidence ||--|o Assertion : "used_in"
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Evidence ||--|o EvidenceSummary : "is_associated_with"
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Activity ||--|o Agent : "was_associate_with"
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Agent ||--|o Identifier : "has_identifier"
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Assertion ||--|o Annotation : "has_annotation"
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Assertion ||--|o Activity : "was_generated_by"
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Assertion ||--|o EvidenceLine : "has_evidence_line"
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Document ||--|o Document : "reference"
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EvidenceItem ||--|o Document : "reference"
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EvidenceLine ||--|o EvidenceItem : "has_evidence_item"
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EvidenceLine ||--|o Activity : "was_generated_by"
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Group ||--|o Identifier : "has_identifier"
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Organization ||--|o Identifier : "has_identifier"
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Person ||--|o Organization : "member"
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Person ||--|o Identifier : "has_identifier"
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SoftwareAgent ||--|o Identifier : "has_identifier"
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```
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‎json-schema-autogen/assertion_evidence.json‎

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"description": "The prov:startedAtTime establishes the relationship between prov:Activity and xsd:DateTime that allows one to specify the time when the activity started.",
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"format": "date-time",
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"type": "string"
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},
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"was_associate_with": {
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"$ref": "#/$defs/Agent"
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}
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},
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"title": "Activity",
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"additionalProperties": false,
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"description": "An agent is something that bears some form of responsibility for an activity taking place, for the existence of an entity, or for another agent's activity.",
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"properties": {
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"is_associated_with": {
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"$ref": "#/$defs/Activity",
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"description": "The brainkb:isAssociatedWith property establishes relationships between different entities: it connects prov:Agent to prov:Activity, reflecting the involvement or connection between an agent and an activity."
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"has_identifier": {
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"$ref": "#/$defs/Identifier"
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}
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},
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"title": "Agent",
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"type": "object"
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},
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"Annotation": {
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"additionalProperties": false,
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"description": "An annotation is a written explanatory or critical description, or other in-context information (e.g., pattern, motif, link), that has been associated with data or other types of information.",
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"title": "Annotation",
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"type": "object"
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},
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"Assertion": {
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"additionalProperties": false,
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"description": "A statement made by a particular agent on a particular occasion that a particular proposition is true, based on the evaluation of one or more lines of evidence.",
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"properties": {
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"hasAssertionCategory": {
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"has_annotation": {
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"$ref": "#/$defs/Annotation"
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},
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"has_assertion_category": {
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"$ref": "#/$defs/Categories",
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"description": "The brainkb:hasAssertionCategory property relates brainkb:Evidence and brainkb:Categories, specifying the classification or category that the assertion belongs to."
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},
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"hasAssertionMethod": {
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"$ref": "#/$defs/AssertionMethod",
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"description": "The brainkb:hasAssertionMethod property relates an eco:Assertion to an brainkb:AssertionMethod that differentiates different types of assertions techniques used while making an assertion."
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"has_assertion_description": {
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"type": "string"
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},
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"hasAssertionText": {
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"description": "The brainkb:hasAssertionText property relates an eco:Assertion to an xsd:string, providing a textual excerpt of the assertion being made.",
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"has_assertion_summary": {
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"description": "The brainkb:has_assertion_text property relates an eco:Assertion to an xsd:string, providing a textual excerpt of the assertion being made.",
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"type": "string"
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},
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"has_data_annotation": {
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"$ref": "#/$defs/DataAnnotation"
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"has_evidence_line": {
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"$ref": "#/$defs/EvidenceLine",
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"description": "A relationship between an assertion or proposition and an evidence line used in evaluating its validity."
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},
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"is_associated_with": {
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"$ref": "#/$defs/AssertionSummary",
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"description": "The brainkb:isAssociatedWith property establishes relationships between different entities:it links sepio:Assertion to brainkb:AssertionSummary, indicating the association between an assertion and its corresponding summary."
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"was_generated_by": {
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"$ref": "#/$defs/Activity"
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}
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},
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"title": "Assertion",
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"type": "object"
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},
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"AssertionMethod": {
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"additionalProperties": false,
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"description": "A means by which a statement is made about the entity",
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"title": "AssertionMethod",
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"type": "object"
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},
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"AssertionSummary": {
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"additionalProperties": false,
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"description": "A summary is a brief statement or description of the main points, especially as a conclusion to a work about the assertion.",
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"properties": {
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"hasAssertionSummary": {
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"description": "The brainkb:hasAssertionSummary property relates a brainkb:AssertionSummary to an xsd:string, providing a concise overview that differentiates various assertions. This summary encapsulates the core content of the assertion, allowing for easy identification and understanding of its essence.",
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"type": "string"
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}
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},
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"title": "AssertionSummary",
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"type": "object"
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},
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"AssertionType": {
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"description": "",
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"enum": [
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"Positive",
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"Negative",
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"Inconclusive"
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],
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"title": "AssertionType",
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"type": "string"
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},
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"Categories": {
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"description": "",
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"enum": [
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"title": "Categories",
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"type": "string"
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},
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"DataAnnotation": {
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"CellAnnotation": {
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"additionalProperties": false,
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"description": "",
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"title": "DataAnnotation",
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"title": "CellAnnotation",
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"type": "object"
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},
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"Document": {
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"additionalProperties": false,
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"description": "A collection of information content entities intended to be understood together as a whole",
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"properties": {
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"identifier": {
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"type": "string"
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},
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"reference": {
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"$ref": "#/$defs/Document"
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}
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},
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"title": "Document",
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"type": "object"
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},
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"Evidence": {
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"EvidenceDirection": {
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"description": "",
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"enum": [
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"supporting",
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"disputing",
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"inconclusive"
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],
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"title": "EvidenceDirection",
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"type": "string"
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},
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"EvidenceItem": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"hasEvidenceCategory": {
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"$ref": "#/$defs/Categories",
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"description": "The brainkb:hasEvidenceCategory property relates brainkb:Evidence and brainkb:Categories, specifying the classification or category that the evidence belongs to."
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},
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"hasEvidenceText": {
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"description": "The brainkb:hasEvidenceText property relates an eco:Evidence to an xsd:string, providing a textual excerpt of the evidence supporting the assertion.",
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"type": "string"
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},
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"is_associated_with": {
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"$ref": "#/$defs/EvidenceSummary",
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"description": "The brainkb:isAssociatedWith property establishes relationships between different entities: it associates eco:Evidence with brainkb:EvidenceSummary, signifying the connection between evidence and its summarized representation."
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},
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"used_in": {
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"$ref": "#/$defs/Assertion",
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"description": "The eco:used_in property establishes a relationship between eco:Evidence and eco:Assertion, indicating that the evidence is utilized to support the corresponding assertion."
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"reference": {
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"$ref": "#/$defs/Document"
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}
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},
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"title": "Evidence",
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"title": "EvidenceItem",
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"type": "object"
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},
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"EvidenceSummary": {
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"EvidenceLine": {
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"additionalProperties": false,
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"description": "A summary is a brief statement or description of the main points, especially as a conclusion to a work about the evidence.",
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"description": "An evidence line represents an independent and meaningful argument for or against a particular proposition, that is based on the interpretation of one or more pieces of information as evidence.",
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"properties": {
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"hasEvidenceSummary": {
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"description": "The brainkb:hasEvidenceSummary property relates a brainkb:EvidenceSummary to an xsd:string, providing a concise overview that differentiates various evidence. This summary encapsulates the core content of the evidence, allowing for easy identification and understanding of its essence.",
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"evidence_direction": {
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"$ref": "#/$defs/EvidenceDirection",
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"description": "A relation indicating whether an evidence line supports or disputes a target proposition (or represents inconclusive evidence that is not sufficient for either)."
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},
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"evidence_line_strength": {
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"$ref": "#/$defs/EvidenceStrength",
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"description": "A relation describing the degree of support provided by an evidence line for a target assertion or proposition."
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},
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"has_evidence_category": {
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"$ref": "#/$defs/Categories"
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},
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"has_evidence_item": {
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"$ref": "#/$defs/EvidenceItem",
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"description": "A relation holding between an evidence line and an individual information entity that contributes to the argument it represents."
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},
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"has_evidenceline_description": {
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"type": "string"
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},
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"was_generated_by": {
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"$ref": "#/$defs/Activity"
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}
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},
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"title": "EvidenceSummary",
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"title": "EvidenceLine",
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"type": "object"
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},
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"Significance": {
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"description": "",
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"enum": [
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"Clinical",
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"NonClinical"
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],
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"title": "Significance",
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"type": "string"
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},
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"SignificanceLevel": {
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"EvidenceStrength": {
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"description": "",
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"enum": [
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"HighlySignificant",
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"NotSignificant",
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"Unknown"
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],
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"title": "SignificanceLevel",
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"title": "EvidenceStrength",
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"type": "string"
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},
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"Group": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"has_identifier": {
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"$ref": "#/$defs/Identifier"
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}
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},
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"title": "Group",
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"type": "object"
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},
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"Identifier": {
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"additionalProperties": false,
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"description": "",
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"title": "Identifier",
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"type": "object"
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},
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"OrcidIdentifier": {
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"additionalProperties": false,
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"description": "",
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"title": "OrcidIdentifier",
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"type": "object"
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},
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"Organization": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"has_identifier": {
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"$ref": "#/$defs/Identifier"
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}
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},
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"title": "Organization",
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"type": "object"
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},
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"Person": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"has_identifier": {
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"$ref": "#/$defs/Identifier"
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},
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"member": {
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"$ref": "#/$defs/Organization"
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}
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},
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"title": "Person",
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"type": "object"
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},
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"PersonIdentifier": {
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"additionalProperties": false,
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"description": "",
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"title": "PersonIdentifier",
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"type": "object"
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},
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"SoftwareAgent": {
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"additionalProperties": false,
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"description": "",
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"properties": {
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"has_identifier": {
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"$ref": "#/$defs/Identifier"
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}
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},
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"title": "SoftwareAgent",
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"type": "object"
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}
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},
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"$id": "https://identifiers.org/brain-bican/assertion-evidence-schema",

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