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Merge pull request #206 from puja-trivedi/20251023_update_bican_biolink
update bican biolink
2 parents 4892bf2 + 6d54e70 commit b0f2374

15 files changed

+14491
-3895
lines changed

biolink-model.yaml

Lines changed: 2346 additions & 580 deletions
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erdiagram-autogen/anatomical_structure.md

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@@ -8,7 +8,6 @@ ParcellationAtlas {
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string version
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string id
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iri_type iri
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uriorcurieList category
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stringList type
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label_type name
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narrative_text description
@@ -17,6 +16,10 @@ ParcellationAtlas {
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uriorcurieList xref
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label_type full_name
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label_typeList synonym
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float information_content
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uriorcurieList equivalent_identifiers
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uriorcurieList named_thing_category
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uriorcurieList category
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}
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ParcellationAnnotationTermMap {
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string subject_parcellation_term
@@ -32,7 +35,6 @@ AnatomicalAnnotationSet {
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string version
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string id
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iri_type iri
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uriorcurieList category
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stringList type
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label_type name
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narrative_text description
@@ -41,6 +43,10 @@ AnatomicalAnnotationSet {
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uriorcurieList xref
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label_type full_name
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label_typeList synonym
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float information_content
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uriorcurieList equivalent_identifiers
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uriorcurieList named_thing_category
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uriorcurieList category
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}
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ParcellationColorAssignment {
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string subject_parcellation_term
@@ -52,7 +58,6 @@ ParcellationColorScheme {
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string version
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string id
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iri_type iri
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uriorcurieList category
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stringList type
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label_type name
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narrative_text description
@@ -61,6 +66,10 @@ ParcellationColorScheme {
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uriorcurieList xref
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label_type full_name
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label_typeList synonym
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float information_content
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uriorcurieList equivalent_identifiers
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uriorcurieList named_thing_category
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uriorcurieList category
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}
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ParcellationTerm {
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integer ordinal
@@ -70,7 +79,6 @@ ParcellationTerm {
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string version
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string id
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iri_type iri
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uriorcurieList category
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stringList type
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label_type name
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narrative_text description
@@ -79,6 +87,10 @@ ParcellationTerm {
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uriorcurieList xref
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label_type full_name
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label_typeList synonym
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float information_content
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uriorcurieList equivalent_identifiers
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uriorcurieList named_thing_category
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uriorcurieList category
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}
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ParcellationTermSet {
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integer ordinal
@@ -87,7 +99,6 @@ ParcellationTermSet {
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string version
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string id
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iri_type iri
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uriorcurieList category
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stringList type
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label_type name
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narrative_text description
@@ -96,12 +107,15 @@ ParcellationTermSet {
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uriorcurieList xref
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label_type full_name
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label_typeList synonym
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float information_content
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uriorcurieList equivalent_identifiers
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uriorcurieList named_thing_category
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uriorcurieList category
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}
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ParcellationTerminology {
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string version
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string id
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iri_type iri
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uriorcurieList category
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stringList type
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label_type name
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narrative_text description
@@ -110,13 +124,16 @@ ParcellationTerminology {
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uriorcurieList xref
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label_type full_name
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label_typeList synonym
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float information_content
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uriorcurieList equivalent_identifiers
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uriorcurieList named_thing_category
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uriorcurieList category
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}
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AnatomicalSpace {
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string measures
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string version
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string id
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iri_type iri
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uriorcurieList category
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stringList type
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label_type name
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narrative_text description
@@ -125,6 +142,10 @@ AnatomicalSpace {
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uriorcurieList xref
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label_type full_name
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label_typeList synonym
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float information_content
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uriorcurieList equivalent_identifiers
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uriorcurieList named_thing_category
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uriorcurieList category
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}
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ImageDataset {
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ANATOMICAL_DIRECTION x_direction
@@ -140,7 +161,6 @@ ImageDataset {
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string version
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string id
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iri_type iri
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uriorcurieList category
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stringList type
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label_type name
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narrative_text description
@@ -149,6 +169,10 @@ ImageDataset {
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uriorcurieList xref
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label_type full_name
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label_typeList synonym
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float information_content
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uriorcurieList equivalent_identifiers
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uriorcurieList named_thing_category
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uriorcurieList category
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}
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ParcellationAtlas ||--|o VersionedNamedThing : "revision_of"

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