Merge pull request #210 from puja-trivedi/lib_gen_20251115

updates to library_gen

Author: puja-trivedi

erdiagram-autogen/library_generation.md

@@ -31,6 +31,7 @@ ProvEntity {
 }
 DissectionRoiPolygon {
     label_type name  
+    uriorcurieList xref  
     string id  
     iri_type iri  
     uriorcurieList category  
@@ -198,14 +199,14 @@ DissectionRoiDelineation {
 }
 LibraryPool {
     label_type name  
-    string local_tube_id  
+    uriorcurieList xref  
+    string tube_internal_label  
     string id  
     iri_type iri  
     stringList type  
     narrative_text description  
     boolean deprecated  
     stringList provided_by  
-    uriorcurieList xref  
     label_type full_name  
     label_typeList synonym  
     float information_content  
@@ -215,13 +216,13 @@ LibraryPool {
 }
 LibraryAliquot {
     label_type name  
+    uriorcurieList xref  
     string id  
     iri_type iri  
     stringList type  
     narrative_text description  
     boolean deprecated  
     stringList provided_by  
-    uriorcurieList xref  
     label_type full_name  
     label_typeList synonym  
     float information_content  
@@ -231,6 +232,7 @@ LibraryAliquot {
 }
 Library {
     label_type name  
+    uriorcurieList xref  
     integer average_size_bp  
     float concentration_nm  
     library_prep_pass_fail library_result  
@@ -243,7 +245,6 @@ Library {
     narrative_text description  
     boolean deprecated  
     stringList provided_by  
-    uriorcurieList xref  
     label_type full_name  
     label_typeList synonym  
     float information_content  
@@ -253,6 +254,7 @@ Library {
 }
 AmplifiedCdna {
     label_type name  
+    uriorcurieList xref  
     float amplified_cDNA_quantity_ng  
     amplified_cdna_rna_amplification_pass_fail amplified_cDNA_result  
     float percent_cdna_longer_than_400bp  
@@ -262,7 +264,6 @@ AmplifiedCdna {
     narrative_text description  
     boolean deprecated  
     stringList provided_by  
-    uriorcurieList xref  
     label_type full_name  
     label_typeList synonym  
     float information_content  
@@ -272,14 +273,14 @@ AmplifiedCdna {
 }
 BarcodedCellSample {
     label_type name  
+    uriorcurieList xref  
     integer number_of_expected_cells  
     string id  
     iri_type iri  
     stringList type  
     narrative_text description  
     boolean deprecated  
     stringList provided_by  
-    uriorcurieList xref  
     label_type full_name  
     label_typeList synonym  
     float information_content  
@@ -289,6 +290,7 @@ BarcodedCellSample {
 }
 EnrichedCellSample {
     label_type name  
+    uriorcurieList xref  
     string enrichment_population  
     string enriched_cell_oligo_name  
     string histone_modification_marker  
@@ -298,7 +300,6 @@ EnrichedCellSample {
     narrative_text description  
     boolean deprecated  
     stringList provided_by  
-    uriorcurieList xref  
     label_type full_name  
     label_typeList synonym  
     float information_content  
@@ -308,6 +309,7 @@ EnrichedCellSample {
 }
 DissociatedCellSample {
     label_type name  
+    uriorcurieList xref  
     dissociated_cell_sample_cell_prep_type cell_prep_type  
     dissociated_cell_sample_cell_label_barcode dissociated_cell_oligo_name  
     string id  
@@ -316,7 +318,6 @@ DissociatedCellSample {
     narrative_text description  
     boolean deprecated  
     stringList provided_by  
-    uriorcurieList xref  
     label_type full_name  
     label_typeList synonym  
     float information_content  
@@ -326,14 +327,14 @@ DissociatedCellSample {
 }
 TissueSample {
     label_type name  
+    uriorcurieList xref  
     stringList structure  
     string id  
     iri_type iri  
     stringList type  
     narrative_text description  
     boolean deprecated  
     stringList provided_by  
-    uriorcurieList xref  
     label_type full_name  
     label_typeList synonym  
     float information_content  
@@ -343,13 +344,13 @@ TissueSample {
 }
 BrainSlab {
     label_type name  
+    uriorcurieList xref  
     string id  
     iri_type iri  
     stringList type  
     narrative_text description  
     boolean deprecated  
     stringList provided_by  
-    uriorcurieList xref  
     label_type full_name  
     label_typeList synonym  
     float information_content  
@@ -359,6 +360,7 @@ BrainSlab {
 }
 Donor {
     label_type name  
+    uriorcurieList xref  
     sex biological_sex  
     string age_at_death_description  
     age_at_death_reference_point age_at_death_reference_point  
@@ -372,7 +374,6 @@ Donor {
     narrative_text description  
     boolean deprecated  
     stringList provided_by  
-    uriorcurieList xref  
     label_type full_name  
     label_typeList synonym  
     float information_content  

json-schema-autogen/library_generation.json

@@ -2093,6 +2093,16 @@
                         "string",
                         "null"
                     ]
+                },
+                "xref": {
+                    "description": "A database cross reference or alternative identifier for a NamedThing or edge between two NamedThings.  This property should point to a database record or webpage that supports the existence of the edge, or gives more detail about the edge. This property can be used on a node or edge to provide multiple URIs or CURIE cross references.",
+                    "items": {
+                        "type": "string"
+                    },
+                    "type": [
+                        "array",
+                        "null"
+                    ]
                 }
             },
             "required": [
@@ -3691,13 +3701,6 @@
                         "null"
                     ]
                 },
-                "local_tube_id": {
-                    "description": "Library Pool Tube local name.  Label of the tube containing the library pool, which is made up of multiple library_aliquots.  This is a Library Lab local tube name, before the pool is aliquoted to the Seq Core provided tube 'Library Pool Tube Name'.",
-                    "type": [
-                        "string",
-                        "null"
-                    ]
-                },
                 "name": {
                     "description": "Library lab's library pool name.  For some labs this may be the same as \"Libray pool tube local name\".   Other labs distinguish between the local tube label of the library pool and the library pool name provided to SeqCore for tracking.  Local Pool Name is used to communicate sequencing status between SeqCore and Library Labs.",
                     "type": [
@@ -3725,6 +3728,13 @@
                         "null"
                     ]
                 },
+                "tube_internal_label": {
+                    "description": "Library Pool Tube local name.  Label of the tube containing the library pool, which is made up of multiple library_aliquots.  This is a Library Lab local tube name, before the pool is aliquoted to the Seq Core provided tube 'Library Pool Tube Name'.",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "items": {
                         "type": "string"