Merge pull request #197 from brain-bican/autogenerated-1.9.3

Generate "other formats" for all models now that modify_jsonldcontext.py is removed

Author: djarecka

json-schema-autogen/anatomical_structure.json

@@ -1189,6 +1189,7 @@
                 },
                 "x_resolution": {
                     "description": "The resolution (length / pixel) in along the x axis (numerical value part).",
+                    "pattern": "^[+]?\\d*\\.?\\d+$",
                     "type": [
                         "number",
                         "null"
@@ -1218,6 +1219,7 @@
                 },
                 "y_resolution": {
                     "description": "The resolution (length / pixel) in along the y axis (numerical value part).",
+                    "pattern": "^[+]?\\d*\\.?\\d+$",
                     "type": [
                         "number",
                         "null"
@@ -1237,6 +1239,7 @@
                 },
                 "z_resolution": {
                     "description": "The resolution (length / pixel) in along the z axis (numerical value part).",
+                    "pattern": "^[+]?\\d*\\.?\\d+$",
                     "type": [
                         "number",
                         "null"
@@ -1861,6 +1864,7 @@
             "properties": {
                 "color": {
                     "description": "A string representing to hex triplet code of a color",
+                    "pattern": "#[0-9a-fA-F]{6}",
                     "type": [
                         "string",
                         "null"
@@ -2764,3 +2768,4 @@
     "type": "object",
     "version": null
 }
+

json-schema-autogen/assertion_evidence.json

@@ -374,3 +374,4 @@
     "type": "object",
     "version": null
 }
+

json-schema-autogen/bke_taxonomy.json

@@ -3462,6 +3462,7 @@
                 },
                 "x_resolution": {
                     "description": "The resolution (length / pixel) in along the x axis (numerical value part).",
+                    "pattern": "{PositiveFloat}",
                     "type": [
                         "number",
                         "null"
@@ -3491,6 +3492,7 @@
                 },
                 "y_resolution": {
                     "description": "The resolution (length / pixel) in along the y axis (numerical value part).",
+                    "pattern": "{PositiveFloat}",
                     "type": [
                         "number",
                         "null"
@@ -3510,6 +3512,7 @@
                 },
                 "z_resolution": {
                     "description": "The resolution (length / pixel) in along the z axis (numerical value part).",
+                    "pattern": "{PositiveFloat}",
                     "type": [
                         "number",
                         "null"
@@ -4708,6 +4711,7 @@
             "properties": {
                 "color": {
                     "description": "A string representing to hex triplet code of a color",
+                    "pattern": "{ColorHexTriplet}",
                     "type": [
                         "string",
                         "null"
@@ -5641,3 +5645,4 @@
     "type": "object",
     "version": null
 }
+

json-schema-autogen/genome_annotation.json

@@ -1959,3 +1959,4 @@
     "type": "object",
     "version": null
 }
+

json-schema-autogen/library_generation.json

@@ -4991,3 +4991,4 @@
     "type": "object",
     "version": null
 }
+

jsonld-context-autogen/anatomical_structure.context.jsonld

@@ -197,7 +197,10 @@
          "@type": "@id",
          "@id": "measures"
       },
-      "category": "@type",
+      "category": {
+         "@type": "xsd:anyURI",
+         "@id": "biolink:category"
+      },
       "checksum_algorithm": {
          "@context": {
             "text": "skos:notation",
@@ -562,4 +565,5 @@
          "@id": "VersionedNamedThing"
       }
    }
-}
+}
+

jsonld-context-autogen/library_generation.context.jsonld

@@ -215,7 +215,10 @@
          "@type": "xsd:integer",
          "@id": "f10e928d-5a2b-4943-af18-d8fe5d05528d"
       },
-      "category": "@type",
+      "category": {
+         "@type": "xsd:anyURI",
+         "@id": "biolink:category"
+      },
       "amplified_cDNA_PCR_cycles": {
          "@type": "xsd:integer",
          "@id": "3827634c-3f8f-4760-b358-86ce4b030238"
@@ -666,4 +669,5 @@
          "@id": "VersionedNamedThing"
       }
    }
-}
+}
+

models_py-autogen/anatomical_structure.py

@@ -12,8 +12,6 @@
 from typing import (
     Any,
     ClassVar,
-    Dict,
-    List,
     Literal,
     Optional,
     Union
@@ -47,7 +45,7 @@ class ConfiguredBaseModel(BaseModel):
 
 
 class LinkMLMeta(RootModel):
-    root: Dict[str, Any] = {}
+    root: dict[str, Any] = {}
     model_config = ConfigDict(frozen=True)
 
     def __getattr__(self, key:str):
@@ -137,16 +135,26 @@ class Categories(str, Enum):
 
 
 class EvidenceStrength(str, Enum):
-    # P value less than 0.01
     HighlySignificant = "HighlySignificant"
-    # P value less than 0.05
+    """
+    P value less than 0.01
+    """
     Significant = "Significant"
-    # P value less than 0.10
+    """
+    P value less than 0.05
+    """
     MarginallySignificant = "MarginallySignificant"
-    # P value greater than or equal to 0.10
+    """
+    P value less than 0.10
+    """
     NotSignificant = "NotSignificant"
-    # Specifies that the significance level is unknown as the information is not present in the study.
+    """
+    P value greater than or equal to 0.10
+    """
     Unknown = "Unknown"
+    """
+    Specifies that the significance level is unknown as the information is not present in the study.
+    """
 
 
 class EvidenceDirection(str, Enum):